RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 GPN3Q9UHW5 284 aaPredicted RBP8.14□□□□□ -1.11
NUP88-208ENST00000574087 FBXO24O75426 580 aa8.13□□□□□ -1.11
NUP88-208ENST00000574087 WISP1O95388 367 aa8.13□□□□□ -1.11
NUP88-208ENST00000574087 APBA3O96018 575 aa8.13□□□□□ -1.11
NUP88-208ENST00000574087 VAMP1P23763 118 aa8.13□□□□□ -1.11
NUP88-208ENST00000574087 ST13P50502 369 aaKnown RBP8.13□□□□□ -1.11
NUP88-208ENST00000574087 NLRP12P59046 1061 aa8.13□□□□□ -1.11
NUP88-208ENST00000574087 TAF1CQ15572 869 aaPredicted RBP8.13□□□□□ -1.11
NUP88-208ENST00000574087 LDLRAD1Q5T700 205 aa8.13□□□□□ -1.11
NUP88-208ENST00000574087 TMEM130Q8N3G9 435 aa8.13□□□□□ -1.11
NUP88-208ENST00000574087 DDX54Q8TDD1 881 aaKnown RBP8.13□□□□□ -1.11
NUP88-208ENST00000574087 MRPL18Q9H0U6 180 aaKnown RBP8.13□□□□□ -1.11
NUP88-208ENST00000574087 TTF2Q9UNY4 1162 aaKnown RBP8.13□□□□□ -1.11
NUP88-208ENST00000574087 CHRNA4P43681 627 aa8.12□□□□□ -1.11
NUP88-208ENST00000574087 NRG1Q02297 640 aaPredicted RBP8.12□□□□□ -1.11
NUP88-208ENST00000574087 PPP2R3AQ06190 1150 aa8.12□□□□□ -1.11
NUP88-208ENST00000574087 ADGRE1Q14246 886 aa8.12□□□□□ -1.11
NUP88-208ENST00000574087 CD163Q86VB7 1156 aa8.12□□□□□ -1.11
NUP88-208ENST00000574087 TMEM151AQ8N4L1 468 aa8.12□□□□□ -1.11
NUP88-208ENST00000574087 UBASH3BQ8TF42 649 aa8.12□□□□□ -1.11
NUP88-208ENST00000574087 MRRFQ96E11 262 aaKnown RBP8.12□□□□□ -1.11
NUP88-208ENST00000574087 KIAA1522Q9P206 1035 aaPredicted RBP8.12□□□□□ -1.11
NUP88-208ENST00000574087 C1QTNF9BB2RNN3 333 aa8.11□□□□□ -1.11
NUP88-208ENST00000574087 ITGB2P05107 769 aa8.11□□□□□ -1.11
NUP88-208ENST00000574087 CYP11A1P05108 521 aa8.11□□□□□ -1.11
NUP88-208ENST00000574087 AP3B2Q13367 1082 aa8.11□□□□□ -1.11
NUP88-208ENST00000574087 DUOXA2Q1HG44 320 aa8.11□□□□□ -1.11
NUP88-208ENST00000574087 KIAA1211Q6ZU35 1233 aa8.11□□□□□ -1.11
NUP88-208ENST00000574087 SV2BQ7L1I2 683 aa8.11□□□□□ -1.11
NUP88-208ENST00000574087 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.11□□□□□ -1.11
NUP88-208ENST00000574087 ZNF428Q96B54 188 aa8.11□□□□□ -1.11
NUP88-208ENST00000574087 LOC100289279A0A1B0GTE1 492 aa8.1□□□□□ -1.11
NUP88-208ENST00000574087 F8W735 103 aaPredicted RBP8.1□□□□□ -1.11
NUP88-208ENST00000574087 PAGE1O75459 146 aa8.1□□□□□ -1.11
NUP88-208ENST00000574087 ECEL1O95672 775 aa8.1□□□□□ -1.11
NUP88-208ENST00000574087 DLGAP3O95886 979 aa8.1□□□□□ -1.11
NUP88-208ENST00000574087 CTSBP07858 339 aa8.1□□□□□ -1.11
NUP88-208ENST00000574087 CELA3AP09093 270 aa8.1□□□□□ -1.11
NUP88-208ENST00000574087 NME2P22392 152 aa8.1□□□□□ -1.11
NUP88-208ENST00000574087 MBTPS1Q14703 1052 aa8.1□□□□□ -1.11
NUP88-208ENST00000574087 POU4F3Q15319 338 aa8.1□□□□□ -1.11
NUP88-208ENST00000574087 STK35Q8TDR2 534 aa8.1□□□□□ -1.11
NUP88-208ENST00000574087 BACH2Q9BYV9 841 aa8.1□□□□□ -1.11
NUP88-208ENST00000574087 USP21Q9UK80 565 aa8.1□□□□□ -1.11
NUP88-208ENST00000574087 BMP6P22004 513 aa8.09□□□□□ -1.11
NUP88-208ENST00000574087 MAOBP27338 520 aa8.09□□□□□ -1.11
NUP88-208ENST00000574087 PLA2G4EQ3MJ16 856 aa8.09□□□□□ -1.11
NUP88-208ENST00000574087 ACAD11Q709F0 780 aa8.09□□□□□ -1.11
NUP88-208ENST00000574087 PDZD3Q86UT5 571 aa8.09□□□□□ -1.11
NUP88-208ENST00000574087 SULF2Q8IWU5 870 aa8.09□□□□□ -1.11
NUP88-208ENST00000574087 NOC4LQ9BVI4 516 aaKnown RBP8.09□□□□□ -1.11
NUP88-208ENST00000574087 USP26Q9BXU7 913 aa8.09□□□□□ -1.11
NUP88-208ENST00000574087 RECKO95980 971 aa8.08□□□□□ -1.12
NUP88-208ENST00000574087 ARNTP27540 789 aa8.08□□□□□ -1.12
NUP88-208ENST00000574087 CCDC85BQ15834 202 aaPredicted RBP8.08□□□□□ -1.12
NUP88-208ENST00000574087 AGGF1Q8N302 714 aaeCLIP8.08□□□□□ -1.12
NUP88-208ENST00000574087 WFDC12Q8WWY7 111 aa8.08□□□□□ -1.12
NUP88-208ENST00000574087 CORO1BQ9BR76 489 aa8.08□□□□□ -1.12
NUP88-208ENST00000574087 AKTIPQ9H8T0 292 aa8.08□□□□□ -1.12
NUP88-208ENST00000574087 MEGF11A6BM72 1044 aa8.07□□□□□ -1.12
NUP88-208ENST00000574087 ALX3O95076 343 aa8.07□□□□□ -1.12
NUP88-208ENST00000574087 GSTP1P09211 210 aaKnown RBP8.07□□□□□ -1.12
NUP88-208ENST00000574087 NOS3P29474 1203 aa8.07□□□□□ -1.12
NUP88-208ENST00000574087 RASIP1Q5U651 963 aa8.07□□□□□ -1.12
NUP88-208ENST00000574087 Q6ZS46 218 aa8.07□□□□□ -1.12
NUP88-208ENST00000574087 TMPRSS13Q9BYE2 586 aa8.07□□□□□ -1.12
NUP88-208ENST00000574087 IREB2P48200 963 aaKnown RBP8.06□□□□□ -1.12
NUP88-208ENST00000574087 ZNF252P-AS1Q0IIN9 211 aa8.06□□□□□ -1.12
NUP88-208ENST00000574087 EXOSC6Q5RKV6 272 aaKnown RBP8.06□□□□□ -1.12
NUP88-208ENST00000574087 TXNRD3Q86VQ6 643 aa8.06□□□□□ -1.12
NUP88-208ENST00000574087 TMEM87AQ8NBN3 555 aa8.06□□□□□ -1.12
NUP88-208ENST00000574087 RUSC1Q9BVN2 902 aa8.06□□□□□ -1.12
NUP88-208ENST00000574087 EMILIN2Q9BXX0 1053 aa8.06□□□□□ -1.12
NUP88-208ENST00000574087 RNF208Q9H0X6 261 aa8.06□□□□□ -1.12
NUP88-208ENST00000574087 CACNA2D2Q9NY47 1150 aa8.06□□□□□ -1.12
NUP88-208ENST00000574087 SAMM50Q9Y512 469 aa8.06□□□□□ -1.12
NUP88-208ENST00000574087 RBM25P49756 843 aaKnown RBP8.05□□□□□ -1.12
NUP88-208ENST00000574087 TSNAXIP1Q2TAA8 658 aa8.05□□□□□ -1.12
NUP88-208ENST00000574087 PCNX4Q63HM2 1172 aa8.05□□□□□ -1.12
NUP88-208ENST00000574087 GRIN3AQ8TCU5 1115 aa8.05□□□□□ -1.12
NUP88-208ENST00000574087 CCDC86Q9H6F5 360 aaKnown RBP8.05□□□□□ -1.12
NUP88-208ENST00000574087 SUGCTQ9HAC7 445 aa8.05□□□□□ -1.12
NUP88-208ENST00000574087 KRT82Q9NSB4 513 aa8.05□□□□□ -1.12
NUP88-208ENST00000574087 LIG3P49916 1009 aa8.04□□□□□ -1.12
NUP88-208ENST00000574087 HP1BP3Q5SSJ5 553 aaPredicted RBP8.04□□□□□ -1.12
NUP88-208ENST00000574087 TTBK2Q6IQ55 1244 aa8.04□□□□□ -1.12
NUP88-208ENST00000574087 SMG8Q8ND04 991 aaKnown RBP8.04□□□□□ -1.12
NUP88-208ENST00000574087 SSBP4Q9BWG4 385 aaPredicted RBP8.04□□□□□ -1.12
NUP88-208ENST00000574087 CYP8B1Q9UNU6 501 aa8.04□□□□□ -1.12
NUP88-208ENST00000574087 RLBP1P12271 317 aa8.03□□□□□ -1.12
NUP88-208ENST00000574087 RPS26P62854 115 aaKnown RBP8.03□□□□□ -1.12
NUP88-208ENST00000574087 LRRC14Q15048 493 aa8.03□□□□□ -1.12
NUP88-208ENST00000574087 DZIP1LQ8IYY4 767 aaKnown RBP8.03□□□□□ -1.12
NUP88-208ENST00000574087 KCNB2Q92953 911 aa8.03□□□□□ -1.12
NUP88-208ENST00000574087 RSRP1Q9BUV0 290 aa8.03□□□□□ -1.12
NUP88-208ENST00000574087 ZC3H12CQ9C0D7 883 aaKnown RBP8.03□□□□□ -1.12
NUP88-208ENST00000574087 CBX8Q9HC52 389 aa8.03□□□□□ -1.12
NUP88-208ENST00000574087 SYNGAP1Q96PV0 1343 aa8.03□□□□□ -1.12
NUP88-208ENST00000574087 ZNF862O60290 1169 aa8.02□□□□□ -1.13
NUP88-208ENST00000574087 GATA4P43694 442 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms