RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 SIL1Q9H173 461 aa22.67■■□□□ 1.22
CHD3-214ENST00000572579 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.67■■□□□ 1.22
CHD3-214ENST00000572579 KIF16BQ96L93 1317 aa22.66■■□□□ 1.22
CHD3-214ENST00000572579 TCP10L2B9ZVM9 353 aa22.66■■□□□ 1.22
CHD3-214ENST00000572579 CACNB3P54284 484 aa22.66■■□□□ 1.22
CHD3-214ENST00000572579 APOBEC3HQ6NTF7 200 aaKnown RBP22.66■■□□□ 1.22
CHD3-214ENST00000572579 TMEM39BQ9GZU3 492 aa22.66■■□□□ 1.22
CHD3-214ENST00000572579 IFIT1P09914 478 aaKnown RBP22.65■■□□□ 1.22
CHD3-214ENST00000572579 RGS19P49795 217 aa22.65■■□□□ 1.22
CHD3-214ENST00000572579 INTS3Q68E01 1043 aaKnown RBP22.65■■□□□ 1.22
CHD3-214ENST00000572579 ZNF296Q8WUU4 475 aaPredicted RBP22.65■■□□□ 1.22
CHD3-214ENST00000572579 LPIN2Q92539 896 aa22.65■■□□□ 1.22
CHD3-214ENST00000572579 WNK4Q96J92 1243 aa22.65■■□□□ 1.22
CHD3-214ENST00000572579 PPP1R12BO60237 982 aaPredicted RBP22.64■■□□□ 1.21
CHD3-214ENST00000572579 BCAR3O75815 825 aa22.64■■□□□ 1.21
CHD3-214ENST00000572579 CIAO1O76071 339 aa22.64■■□□□ 1.21
CHD3-214ENST00000572579 HDLBPQ00341 1268 aaKnown RBP22.64■■□□□ 1.21
CHD3-214ENST00000572579 TBC1D22AQ8WUA7 517 aa22.64■■□□□ 1.21
CHD3-214ENST00000572579 ARHGAP45Q92619 1136 aa22.64■■□□□ 1.21
CHD3-214ENST00000572579 MRIQ9BWK5 157 aa22.64■■□□□ 1.21
CHD3-214ENST00000572579 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.64■■□□□ 1.21
CHD3-214ENST00000572579 FRAT2O75474 233 aaPredicted RBP22.63■■□□□ 1.21
CHD3-214ENST00000572579 MIER1Q8N108 512 aa22.63■■□□□ 1.21
CHD3-214ENST00000572579 ZDHHC15Q96MV8 337 aa22.63■■□□□ 1.21
CHD3-214ENST00000572579 GPR25O00155 361 aa22.62■■□□□ 1.21
CHD3-214ENST00000572579 IGF2BP3O00425 579 aaKnown RBP eCLIP22.62■■□□□ 1.21
CHD3-214ENST00000572579 SLC5A1P13866 664 aa22.62■■□□□ 1.21
CHD3-214ENST00000572579 ADORA1P30542 326 aa22.62■■□□□ 1.21
CHD3-214ENST00000572579 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.62■■□□□ 1.21
CHD3-214ENST00000572579 CTU1Q7Z7A3 348 aaKnown RBP22.62■■□□□ 1.21
CHD3-214ENST00000572579 CFHR5Q9BXR6 569 aa22.62■■□□□ 1.21
CHD3-214ENST00000572579 COPRSQ9NQ92 184 aa22.62■■□□□ 1.21
CHD3-214ENST00000572579 UNCXA6NJT0 531 aa22.61■■□□□ 1.21
CHD3-214ENST00000572579 TRIM27P14373 513 aa22.61■■□□□ 1.21
CHD3-214ENST00000572579 SREBF2Q12772 1141 aa22.61■■□□□ 1.21
CHD3-214ENST00000572579 IFNL1Q8IU54 200 aa22.61■■□□□ 1.21
CHD3-214ENST00000572579 CNKSR2Q8WXI2 1034 aa22.61■■□□□ 1.21
CHD3-214ENST00000572579 TEKT1Q969V4 418 aa22.61■■□□□ 1.21
CHD3-214ENST00000572579 PTPN18Q99952 460 aa22.61■■□□□ 1.21
CHD3-214ENST00000572579 CEP126Q9P2H0 1117 aa22.61■■□□□ 1.21
CHD3-214ENST00000572579 FBXO3Q9UK99 471 aa22.61■■□□□ 1.21
CHD3-214ENST00000572579 ZBTB48P10074 688 aaPredicted RBP22.6■■□□□ 1.21
CHD3-214ENST00000572579 IREB2P48200 963 aaKnown RBP22.6■■□□□ 1.21
CHD3-214ENST00000572579 TNFAIP1Q13829 316 aa22.6■■□□□ 1.21
CHD3-214ENST00000572579 ATP2B3Q16720 1220 aa22.6■■□□□ 1.21
CHD3-214ENST00000572579 SUGT1Q9Y2Z0 365 aa22.6■■□□□ 1.21
CHD3-214ENST00000572579 AKAP11Q9UKA4 1901 aa22.6■■□□□ 1.21
CHD3-214ENST00000572579 MANSC4A6NHS7 340 aaPredicted RBP22.59■■□□□ 1.21
CHD3-214ENST00000572579 PHKA1P46020 1223 aa22.59■■□□□ 1.21
CHD3-214ENST00000572579 NOM1Q5C9Z4 860 aaKnown RBP22.59■■□□□ 1.21
CHD3-214ENST00000572579 ANKRD13AQ8IZ07 590 aa22.59■■□□□ 1.21
CHD3-214ENST00000572579 IL15P40933 162 aaPredicted RBP22.58■■□□□ 1.21
CHD3-214ENST00000572579 TIMM10P62072 90 aa22.58■■□□□ 1.21
CHD3-214ENST00000572579 HHIPL2Q6UWX4 724 aa22.58■■□□□ 1.21
CHD3-214ENST00000572579 ELP3Q9H9T3 547 aa22.58■■□□□ 1.21
CHD3-214ENST00000572579 TESPA1A2RU30 521 aaPredicted RBP22.57■■□□□ 1.2
CHD3-214ENST00000572579 PRDX5P30044 214 aa22.57■■□□□ 1.2
CHD3-214ENST00000572579 DIXDC1Q155Q3 683 aa22.57■■□□□ 1.2
CHD3-214ENST00000572579 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.57■■□□□ 1.2
CHD3-214ENST00000572579 WDR66Q8TBY9 1149 aa22.57■■□□□ 1.2
CHD3-214ENST00000572579 MS4A4AQ96JQ5 239 aa22.57■■□□□ 1.2
CHD3-214ENST00000572579 ECM29Q5VYK3 1845 aa22.57■■□□□ 1.2
CHD3-214ENST00000572579 INHBEP58166 350 aa22.56■■□□□ 1.2
CHD3-214ENST00000572579 MTX1Q13505 466 aa22.56■■□□□ 1.2
CHD3-214ENST00000572579 VGLL4Q14135 290 aa22.56■■□□□ 1.2
CHD3-214ENST00000572579 DAGLAQ9Y4D2 1042 aa22.56■■□□□ 1.2
CHD3-214ENST00000572579 MAP3K9P80192 1104 aa22.55■■□□□ 1.2
CHD3-214ENST00000572579 CAP1Q01518 475 aa22.55■■□□□ 1.2
CHD3-214ENST00000572579 ATF7IPQ6VMQ6 1270 aa22.55■■□□□ 1.2
CHD3-214ENST00000572579 CLUAP1Q96AJ1 413 aa22.55■■□□□ 1.2
CHD3-214ENST00000572579 OPTNQ96CV9 577 aa22.55■■□□□ 1.2
CHD3-214ENST00000572579 HPS5Q9UPZ3 1129 aa22.55■■□□□ 1.2
CHD3-214ENST00000572579 ARAP2Q8WZ64 1704 aa22.54■■□□□ 1.2
CHD3-214ENST00000572579 SRGAP3O43295 1099 aa22.54■■□□□ 1.2
CHD3-214ENST00000572579 FKTNO75072 461 aa22.54■■□□□ 1.2
CHD3-214ENST00000572579 TNNI2P48788 182 aa22.54■■□□□ 1.2
CHD3-214ENST00000572579 NFIAQ12857 509 aa22.54■■□□□ 1.2
CHD3-214ENST00000572579 FKBP1CQ5VVH2 108 aa22.54■■□□□ 1.2
CHD3-214ENST00000572579 CCDC102BQ68D86 513 aa22.54■■□□□ 1.2
CHD3-214ENST00000572579 CDC42EP5Q6NZY7 148 aa22.54■■□□□ 1.2
CHD3-214ENST00000572579 FAM83AQ86UY5 434 aa22.54■■□□□ 1.2
CHD3-214ENST00000572579 FRAT1Q92837 279 aaPredicted RBP22.54■■□□□ 1.2
CHD3-214ENST00000572579 HTTP42858 3142 aa22.54■■□□□ 1.2
CHD3-214ENST00000572579 ZBTB22O15209 634 aa22.53■■□□□ 1.2
CHD3-214ENST00000572579 GNAI3P08754 354 aa22.53■■□□□ 1.2
CHD3-214ENST00000572579 TFCP2Q12800 502 aa22.53■■□□□ 1.2
CHD3-214ENST00000572579 PNMA6EA0A0J9YXQ4 647 aa22.52■■□□□ 1.2
CHD3-214ENST00000572579 ALDH1A1P00352 501 aa22.52■■□□□ 1.2
CHD3-214ENST00000572579 SOX10P56693 466 aa22.52■■□□□ 1.2
CHD3-214ENST00000572579 MLLT1Q03111 559 aaPredicted RBP22.52■■□□□ 1.2
CHD3-214ENST00000572579 RASGRF1Q13972 1273 aa22.52■■□□□ 1.2
CHD3-214ENST00000572579 ZFPM1Q8IX07 1006 aa22.52■■□□□ 1.2
CHD3-214ENST00000572579 BRI3BPQ8WY22 251 aa22.52■■□□□ 1.2
CHD3-214ENST00000572579 HDAC5Q9UQL6 1122 aa22.52■■□□□ 1.2
CHD3-214ENST00000572579 SNCAIPQ9Y6H5 919 aa22.52■■□□□ 1.2
CHD3-214ENST00000572579 MAST3O60307 1309 aa22.52■■□□□ 1.2
CHD3-214ENST00000572579 SALL1Q9NSC2 1324 aa22.52■■□□□ 1.2
CHD3-214ENST00000572579 IPO8O15397 1037 aaKnown RBP22.51■■□□□ 1.19
CHD3-214ENST00000572579 CRHR2Q13324 411 aa22.51■■□□□ 1.19
CHD3-214ENST00000572579 MIGA2Q7L4E1 593 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms