RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 MINDY4BA8MYZ0 360 aa11.66□□□□□ -0.54
VPS53-206ENST00000570359 MAP3K12Q12852 859 aa11.66□□□□□ -0.54
VPS53-206ENST00000570359 TTF1Q15361 905 aaPredicted RBP11.66□□□□□ -0.54
VPS53-206ENST00000570359 CSPP1Q1MSJ5 1256 aa11.66□□□□□ -0.54
VPS53-206ENST00000570359 PARP10Q53GL7 1025 aa11.66□□□□□ -0.54
VPS53-206ENST00000570359 ZSCAN25Q6NSZ9 544 aa11.66□□□□□ -0.54
VPS53-206ENST00000570359 ANKRD18AQ8IVF6 992 aa11.66□□□□□ -0.54
VPS53-206ENST00000570359 LCORLQ8N3X6 602 aa11.66□□□□□ -0.54
VPS53-206ENST00000570359 SDR42E1Q8WUS8 393 aa11.66□□□□□ -0.54
VPS53-206ENST00000570359 ERCC4Q92889 916 aaPredicted RBP11.66□□□□□ -0.54
VPS53-206ENST00000570359 NBPF3Q9H094 633 aa11.66□□□□□ -0.54
VPS53-206ENST00000570359 CCNL1Q9UK58 526 aaPredicted RBP11.66□□□□□ -0.54
VPS53-206ENST00000570359 NEDD4P46934 1319 aa11.66□□□□□ -0.54
VPS53-206ENST00000570359 UQCRFS1P1P0C7P4 283 aa11.66□□□□□ -0.54
VPS53-206ENST00000570359 NBPF5PQ86XG9 351 aaPredicted RBP11.66□□□□□ -0.54
VPS53-206ENST00000570359 LEO1Q8WVC0 666 aaPredicted RBP11.66□□□□□ -0.54
VPS53-206ENST00000570359 SMARCC1Q92922 1105 aaPredicted RBP11.66□□□□□ -0.54
VPS53-206ENST00000570359 PHKBQ93100 1093 aa11.66□□□□□ -0.54
VPS53-206ENST00000570359 SLC4A4Q9Y6R1 1079 aa11.66□□□□□ -0.54
VPS53-206ENST00000570359 AKAP11Q9UKA4 1901 aa11.65□□□□□ -0.54
VPS53-206ENST00000570359 UBE2Q2LH0YL09 131 aa11.65□□□□□ -0.54
VPS53-206ENST00000570359 ZPR1O75312 459 aa11.65□□□□□ -0.54
VPS53-206ENST00000570359 RESTQ13127 1097 aa11.65□□□□□ -0.54
VPS53-206ENST00000570359 CMTR1Q8N1G2 835 aaKnown RBP11.65□□□□□ -0.54
VPS53-206ENST00000570359 NAP1L5Q96NT1 182 aaPredicted RBP11.65□□□□□ -0.54
VPS53-206ENST00000570359 WNK3Q9BYP7 1800 aa11.65□□□□□ -0.54
VPS53-206ENST00000570359 COL22A1Q8NFW1 1626 aaPredicted RBP11.65□□□□□ -0.54
VPS53-206ENST00000570359 FGFR2P21802 821 aa11.65□□□□□ -0.54
VPS53-206ENST00000570359 ADD1P35611 737 aaKnown RBP11.65□□□□□ -0.54
VPS53-206ENST00000570359 BARGINQ6ZT62 677 aa11.65□□□□□ -0.54
VPS53-206ENST00000570359 TMEM87AQ8NBN3 555 aa11.65□□□□□ -0.54
VPS53-206ENST00000570359 EPB41L4AQ9HCS5 686 aaPredicted RBP11.65□□□□□ -0.54
VPS53-206ENST00000570359 ABCC12Q96J65 1359 aa11.64□□□□□ -0.55
VPS53-206ENST00000570359 NR1I2O75469 434 aa11.64□□□□□ -0.55
VPS53-206ENST00000570359 CYP7A1P22680 504 aa11.64□□□□□ -0.55
VPS53-206ENST00000570359 ARID4AP29374 1257 aaPredicted RBP11.64□□□□□ -0.55
VPS53-206ENST00000570359 MB21D2Q8IYB1 491 aaPredicted RBP11.64□□□□□ -0.55
VPS53-206ENST00000570359 ZNF830Q96NB3 372 aaPredicted RBP11.64□□□□□ -0.55
VPS53-206ENST00000570359 GPR101Q96P66 508 aaPredicted RBP11.64□□□□□ -0.55
VPS53-206ENST00000570359 CDC5LQ99459 802 aaKnown RBP11.64□□□□□ -0.55
VPS53-206ENST00000570359 ORC3Q9UBD5 711 aaPredicted RBP11.64□□□□□ -0.55
VPS53-206ENST00000570359 NRAPQ86VF7 1730 aa11.64□□□□□ -0.55
VPS53-206ENST00000570359 CYP2D7A0A087X1C5 515 aa11.64□□□□□ -0.55
VPS53-206ENST00000570359 ADGRA1Q86SQ6 560 aa11.64□□□□□ -0.55
VPS53-206ENST00000570359 PGBD1Q96JS3 809 aa11.64□□□□□ -0.55
VPS53-206ENST00000570359 SETDB2Q96T68 719 aa11.64□□□□□ -0.55
VPS53-206ENST00000570359 NUP62CLQ9H1M0 184 aa11.64□□□□□ -0.55
VPS53-206ENST00000570359 NWD2Q9ULI1 1742 aa11.64□□□□□ -0.55
VPS53-206ENST00000570359 CARMIL3Q8ND23 1372 aa11.64□□□□□ -0.55
VPS53-206ENST00000570359 MSNP26038 577 aaKnown RBP11.63□□□□□ -0.55
VPS53-206ENST00000570359 IFNL3Q8IZI9 196 aa11.63□□□□□ -0.55
VPS53-206ENST00000570359 USP28Q96RU2 1077 aa11.63□□□□□ -0.55
VPS53-206ENST00000570359 STRBPQ96SI9 672 aaKnown RBP11.63□□□□□ -0.55
VPS53-206ENST00000570359 ALDH8A1Q9H2A2 487 aaPredicted RBP11.63□□□□□ -0.55
VPS53-206ENST00000570359 TNMDQ9H2S6 317 aa11.63□□□□□ -0.55
VPS53-206ENST00000570359 MYH7P12883 1935 aa11.63□□□□□ -0.55
VPS53-206ENST00000570359 TCRBV5S4A2TA0A5A2 114 aa11.63□□□□□ -0.55
VPS53-206ENST00000570359 PRDM1O75626 825 aa11.63□□□□□ -0.55
VPS53-206ENST00000570359 FDPSP14324 419 aaKnown RBP11.63□□□□□ -0.55
VPS53-206ENST00000570359 ME1P48163 572 aa11.63□□□□□ -0.55
VPS53-206ENST00000570359 DYNLL1P63167 89 aaKnown RBP11.63□□□□□ -0.55
VPS53-206ENST00000570359 TMEM67Q5HYA8 995 aa11.63□□□□□ -0.55
VPS53-206ENST00000570359 C8orf76Q96K31 380 aa11.63□□□□□ -0.55
VPS53-206ENST00000570359 IFIT3O14879 490 aaKnown RBP11.62□□□□□ -0.55
VPS53-206ENST00000570359 SMARCC2Q8TAQ2 1214 aa11.62□□□□□ -0.55
VPS53-206ENST00000570359 NUP133Q8WUM0 1156 aa11.62□□□□□ -0.55
VPS53-206ENST00000570359 SCAND2PQ9GZW5 306 aaPredicted RBP11.62□□□□□ -0.55
VPS53-206ENST00000570359 BCL2L12Q9HB09 334 aa11.62□□□□□ -0.55
VPS53-206ENST00000570359 METAP2P50579 478 aaKnown RBP eCLIP11.62□□□□□ -0.55
VPS53-206ENST00000570359 EVX2Q03828 476 aa11.62□□□□□ -0.55
VPS53-206ENST00000570359 GNL2Q13823 731 aaKnown RBP11.62□□□□□ -0.55
VPS53-206ENST00000570359 UBE3CQ15386 1083 aa11.62□□□□□ -0.55
VPS53-206ENST00000570359 SPC24Q8NBT2 197 aa11.62□□□□□ -0.55
VPS53-206ENST00000570359 HPS5Q9UPZ3 1129 aa11.62□□□□□ -0.55
VPS53-206ENST00000570359 TACC3Q9Y6A5 838 aa11.62□□□□□ -0.55
VPS53-206ENST00000570359 HMGN5P82970 282 aaKnown RBP11.62□□□□□ -0.55
VPS53-206ENST00000570359 VPS72Q15906 364 aa11.62□□□□□ -0.55
VPS53-206ENST00000570359 PPP1R9BQ96SB3 815 aa11.62□□□□□ -0.55
VPS53-206ENST00000570359 RTCBQ9Y3I0 505 aaKnown RBP11.62□□□□□ -0.55
VPS53-206ENST00000570359 BCL9LQ86UU0 1499 aa11.61□□□□□ -0.55
VPS53-206ENST00000570359 PIBF1Q8WXW3 757 aa11.61□□□□□ -0.55
VPS53-206ENST00000570359 ZNF274Q96GC6 653 aaPredicted RBP11.61□□□□□ -0.55
VPS53-206ENST00000570359 MINPP1Q9UNW1 487 aa11.61□□□□□ -0.55
VPS53-206ENST00000570359 hCG_1642624A0A1W2PR95 340 aa11.61□□□□□ -0.55
VPS53-206ENST00000570359 CDC27P30260 824 aa11.61□□□□□ -0.55
VPS53-206ENST00000570359 RFC4P35249 363 aa11.61□□□□□ -0.55
VPS53-206ENST00000570359 SF3A1Q15459 793 aaKnown RBP11.61□□□□□ -0.55
VPS53-206ENST00000570359 MAP3K11Q16584 847 aa11.61□□□□□ -0.55
VPS53-206ENST00000570359 LUZP1Q86V48 1076 aa11.61□□□□□ -0.55
VPS53-206ENST00000570359 ARHGEF1Q92888 912 aaKnown RBP11.61□□□□□ -0.55
VPS53-206ENST00000570359 ANGEL1Q9UNK9 670 aaKnown RBP11.61□□□□□ -0.55
VPS53-206ENST00000570359 KIF3AQ9Y496 699 aa11.61□□□□□ -0.55
VPS53-206ENST00000570359 GOLGA8AA7E2F4 631 aa11.6□□□□□ -0.55
VPS53-206ENST00000570359 GSG1L2A8MUP6 293 aa11.6□□□□□ -0.55
VPS53-206ENST00000570359 ADCY5O95622 1261 aa11.6□□□□□ -0.55
VPS53-206ENST00000570359 CAVIN4Q5BKX8 364 aa11.6□□□□□ -0.55
VPS53-206ENST00000570359 FAM196AQ6ZSG2 479 aa11.6□□□□□ -0.55
VPS53-206ENST00000570359 CCAR1Q8IX12 1150 aaKnown RBP11.6□□□□□ -0.55
VPS53-206ENST00000570359 NLRP3Q96P20 1036 aa11.6□□□□□ -0.55
VPS53-206ENST00000570359 ZSWIM5Q9P217 1185 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms