RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 KIAA0825Q8IV33 1275 aa11.34□□□□□ -0.59
VPS35-211ENST00000569950 NSUN4Q96CB9 384 aaKnown RBP11.34□□□□□ -0.59
VPS35-211ENST00000569950 NMRK2Q9NPI5 230 aa11.34□□□□□ -0.59
VPS35-211ENST00000569950 DDX60LQ5H9U9 1706 aaKnown RBP11.34□□□□□ -0.59
VPS35-211ENST00000569950 GAKO14976 1311 aa11.34□□□□□ -0.59
VPS35-211ENST00000569950 MYO3BQ8WXR4 1341 aa11.34□□□□□ -0.59
VPS35-211ENST00000569950 RFX7Q2KHR2 1363 aa11.33□□□□□ -0.6
VPS35-211ENST00000569950 G3V3G9 751 aa11.33□□□□□ -0.6
VPS35-211ENST00000569950 GOLIM4O00461 696 aa11.33□□□□□ -0.6
VPS35-211ENST00000569950 GLRX3O76003 335 aaKnown RBP11.33□□□□□ -0.6
VPS35-211ENST00000569950 MAP4K4O95819 1239 aaPredicted RBP11.33□□□□□ -0.6
VPS35-211ENST00000569950 MECOMQ03112 1051 aa11.33□□□□□ -0.6
VPS35-211ENST00000569950 TTC22Q5TAA0 569 aa11.33□□□□□ -0.6
VPS35-211ENST00000569950 DCAF8Q5TAQ9 597 aa11.33□□□□□ -0.6
VPS35-211ENST00000569950 TRPM4Q8TD43 1214 aa11.33□□□□□ -0.6
VPS35-211ENST00000569950 TBC1D22AQ8WUA7 517 aa11.33□□□□□ -0.6
VPS35-211ENST00000569950 DNAJC2Q99543 621 aaKnown RBP11.33□□□□□ -0.6
VPS35-211ENST00000569950 PAG1Q9NWQ8 432 aa11.33□□□□□ -0.6
VPS35-211ENST00000569950 SUGT1Q9Y2Z0 365 aa11.33□□□□□ -0.6
VPS35-211ENST00000569950 ASTN2O75129 1339 aaPredicted RBP11.33□□□□□ -0.6
VPS35-211ENST00000569950 USP17L8P0C7I0 530 aa11.32□□□□□ -0.6
VPS35-211ENST00000569950 POTEIP0CG38 1075 aa11.32□□□□□ -0.6
VPS35-211ENST00000569950 POTEJP0CG39 1038 aa11.32□□□□□ -0.6
VPS35-211ENST00000569950 SAMD7Q7Z3H4 446 aa11.32□□□□□ -0.6
VPS35-211ENST00000569950 MICALL2Q8IY33 904 aa11.32□□□□□ -0.6
VPS35-211ENST00000569950 MTMR14Q8NCE2 650 aa11.32□□□□□ -0.6
VPS35-211ENST00000569950 FBXW7Q969H0 707 aa11.32□□□□□ -0.6
VPS35-211ENST00000569950 CNOT7Q9UIV1 285 aaKnown RBP11.32□□□□□ -0.6
VPS35-211ENST00000569950 SIPA1L1O43166 1804 aa11.32□□□□□ -0.6
VPS35-211ENST00000569950 F8W031 263 aaPredicted RBP11.31□□□□□ -0.6
VPS35-211ENST00000569950 FRAT2O75474 233 aaPredicted RBP11.31□□□□□ -0.6
VPS35-211ENST00000569950 PDE6AP16499 860 aa11.31□□□□□ -0.6
VPS35-211ENST00000569950 HDLBPQ00341 1268 aaKnown RBP11.31□□□□□ -0.6
VPS35-211ENST00000569950 APOBEC3HQ6NTF7 200 aaKnown RBP11.31□□□□□ -0.6
VPS35-211ENST00000569950 KBTBD3Q8NAB2 608 aa11.31□□□□□ -0.6
VPS35-211ENST00000569950 FAM163AQ96GL9 167 aaPredicted RBP11.31□□□□□ -0.6
VPS35-211ENST00000569950 MRIQ9BWK5 157 aa11.31□□□□□ -0.6
VPS35-211ENST00000569950 TAF1DQ9H5J8 278 aaPredicted RBP11.31□□□□□ -0.6
VPS35-211ENST00000569950 ABCF2Q9UG63 623 aa11.31□□□□□ -0.6
VPS35-211ENST00000569950 TTF2Q9UNY4 1162 aaKnown RBP11.31□□□□□ -0.6
VPS35-211ENST00000569950 DAGLAQ9Y4D2 1042 aa11.31□□□□□ -0.6
VPS35-211ENST00000569950 SPDYE2BA6NHP3 402 aa11.3□□□□□ -0.6
VPS35-211ENST00000569950 KIF3CO14782 793 aa11.3□□□□□ -0.6
VPS35-211ENST00000569950 ERC2O15083 957 aa11.3□□□□□ -0.6
VPS35-211ENST00000569950 LDHBP07195 334 aaKnown RBP11.3□□□□□ -0.6
VPS35-211ENST00000569950 SPDYE6P0CI01 402 aa11.3□□□□□ -0.6
VPS35-211ENST00000569950 CRKP46108 304 aa11.3□□□□□ -0.6
VPS35-211ENST00000569950 RHBDL3P58872 404 aa11.3□□□□□ -0.6
VPS35-211ENST00000569950 NBPF9Q3BBW0 867 aa11.3□□□□□ -0.6
VPS35-211ENST00000569950 DPY19L2Q6NUT2 758 aa11.3□□□□□ -0.6
VPS35-211ENST00000569950 HHIPL2Q6UWX4 724 aa11.3□□□□□ -0.6
VPS35-211ENST00000569950 GPATCH3Q96I76 525 aa11.3□□□□□ -0.6
VPS35-211ENST00000569950 PRMT6Q96LA8 375 aaPredicted RBP11.3□□□□□ -0.6
VPS35-211ENST00000569950 IL25Q9H293 177 aa11.3□□□□□ -0.6
VPS35-211ENST00000569950 RRAGCQ9HB90 399 aa11.3□□□□□ -0.6
VPS35-211ENST00000569950 MYOZ2Q9NPC6 264 aa11.3□□□□□ -0.6
VPS35-211ENST00000569950 PGAP2Q9UHJ9 254 aa11.3□□□□□ -0.6
VPS35-211ENST00000569950 SERPINA10Q9UK55 444 aa11.3□□□□□ -0.6
VPS35-211ENST00000569950 BAZ2AQ9UIF9 1905 aaKnown RBP11.29□□□□□ -0.6
VPS35-211ENST00000569950 PAPPA2Q9BXP8 1791 aa11.29□□□□□ -0.6
VPS35-211ENST00000569950 WNT10BO00744 389 aa11.29□□□□□ -0.6
VPS35-211ENST00000569950 FOXP2O15409 715 aa11.29□□□□□ -0.6
VPS35-211ENST00000569950 SDSP20132 328 aa11.29□□□□□ -0.6
VPS35-211ENST00000569950 ADD2P35612 726 aa11.29□□□□□ -0.6
VPS35-211ENST00000569950 RGS3P49796 1198 aa11.29□□□□□ -0.6
VPS35-211ENST00000569950 CFAP100Q494V2 611 aa11.29□□□□□ -0.6
VPS35-211ENST00000569950 TBC1D10BQ4KMP7 808 aaPredicted RBP11.29□□□□□ -0.6
VPS35-211ENST00000569950 ERICH6Q7L0X2 663 aa11.29□□□□□ -0.6
VPS35-211ENST00000569950 ZNF784Q8NCA9 323 aaPredicted RBP11.29□□□□□ -0.6
VPS35-211ENST00000569950 ZNF526Q8TF50 670 aaPredicted RBP11.29□□□□□ -0.6
VPS35-211ENST00000569950 ZDHHC15Q96MV8 337 aa11.29□□□□□ -0.6
VPS35-211ENST00000569950 RIOK1Q9BRS2 568 aaKnown RBP11.29□□□□□ -0.6
VPS35-211ENST00000569950 HACL1Q9UJ83 578 aa11.29□□□□□ -0.6
VPS35-211ENST00000569950 MROH7-TTC4A0A0A0MT08 1334 aa11.29□□□□□ -0.6
VPS35-211ENST00000569950 NAV1Q8NEY1 1877 aa11.28□□□□□ -0.6
VPS35-211ENST00000569950 GPR75-ASB3A0A0A6YYF3 556 aa11.28□□□□□ -0.6
VPS35-211ENST00000569950 IGSF3O75054 1194 aa11.28□□□□□ -0.6
VPS35-211ENST00000569950 IDH1O75874 414 aaKnown RBP11.28□□□□□ -0.6
VPS35-211ENST00000569950 YY1P25490 414 aa11.28□□□□□ -0.6
VPS35-211ENST00000569950 EPHX2P34913 555 aa11.28□□□□□ -0.6
VPS35-211ENST00000569950 TTF1Q15361 905 aaPredicted RBP11.28□□□□□ -0.6
VPS35-211ENST00000569950 KIF4BQ2VIQ3 1234 aa11.28□□□□□ -0.6
VPS35-211ENST00000569950 BMP2KLQ5H9B9 411 aa11.28□□□□□ -0.6
VPS35-211ENST00000569950 SPTY2D1Q68D10 685 aaPredicted RBP11.28□□□□□ -0.6
VPS35-211ENST00000569950 ZGPATQ8N5A5 531 aaKnown RBP11.28□□□□□ -0.6
VPS35-211ENST00000569950 MAGEB6Q8N7X4 407 aa11.28□□□□□ -0.6
VPS35-211ENST00000569950 EVI5LQ96CN4 794 aa11.28□□□□□ -0.6
VPS35-211ENST00000569950 ADARB2Q9NS39 739 aaKnown RBP11.28□□□□□ -0.6
VPS35-211ENST00000569950 LRP2BPQ9P2M1 347 aa11.28□□□□□ -0.6
VPS35-211ENST00000569950 ZBTB47Q9UFB7 747 aaPredicted RBP11.28□□□□□ -0.6
VPS35-211ENST00000569950 MYH1P12882 1939 aa11.28□□□□□ -0.6
VPS35-211ENST00000569950 ZNF532Q9HCE3 1301 aa11.28□□□□□ -0.6
VPS35-211ENST00000569950 CNTNAP1P78357 1384 aa11.28□□□□□ -0.6
VPS35-211ENST00000569950 VEGFAP15692 232 aaPredicted RBP11.27□□□□□ -0.61
VPS35-211ENST00000569950 MMP14P50281 582 aa11.27□□□□□ -0.61
VPS35-211ENST00000569950 PPP4CP60510 307 aa11.27□□□□□ -0.61
VPS35-211ENST00000569950 DYNLL1P63167 89 aaKnown RBP11.27□□□□□ -0.61
VPS35-211ENST00000569950 UBE3CQ15386 1083 aa11.27□□□□□ -0.61
VPS35-211ENST00000569950 SPDYE2Q495Y8 402 aa11.27□□□□□ -0.61
VPS35-211ENST00000569950 ZMYM1Q5SVZ6 1142 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms