RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 VPS37DQ86XT2 251 aa12.73□□□□□ -0.37
CDH3-210ENST00000569117 ZNF277Q9NRM2 450 aaPredicted RBP12.73□□□□□ -0.37
CDH3-210ENST00000569117 GNL3LQ9NVN8 582 aaKnown RBP12.73□□□□□ -0.37
CDH3-210ENST00000569117 MYO5AQ9Y4I1 1855 aaKnown RBP12.73□□□□□ -0.37
CDH3-210ENST00000569117 RIMBP2O15034 1052 aa12.72□□□□□ -0.37
CDH3-210ENST00000569117 MCAMP43121 646 aa12.72□□□□□ -0.37
CDH3-210ENST00000569117 TTC22Q5TAA0 569 aa12.72□□□□□ -0.37
CDH3-210ENST00000569117 PELP1Q8IZL8 1130 aaKnown RBP12.72□□□□□ -0.37
CDH3-210ENST00000569117 TDRD7Q8NHU6 1098 aaKnown RBP12.72□□□□□ -0.37
CDH3-210ENST00000569117 HAUS7Q99871 368 aa12.72□□□□□ -0.37
CDH3-210ENST00000569117 ZMYND15Q9H091 742 aa12.72□□□□□ -0.37
CDH3-210ENST00000569117 GSPT1P15170 499 aaKnown RBP12.71□□□□□ -0.37
CDH3-210ENST00000569117 BMP2KLQ5H9B9 411 aa12.71□□□□□ -0.37
CDH3-210ENST00000569117 LARGE2Q8N3Y3 721 aa12.71□□□□□ -0.37
CDH3-210ENST00000569117 SPATA5Q8NB90 893 aa12.71□□□□□ -0.37
CDH3-210ENST00000569117 CD209Q9NNX6 404 aa12.71□□□□□ -0.37
CDH3-210ENST00000569117 HMG20BQ9P0W2 317 aa12.71□□□□□ -0.37
CDH3-210ENST00000569117 DENND2AQ9ULE3 1009 aa12.71□□□□□ -0.37
CDH3-210ENST00000569117 RFX7Q2KHR2 1363 aa12.7□□□□□ -0.38
CDH3-210ENST00000569117 TRIM66O15016 1216 aa12.7□□□□□ -0.38
CDH3-210ENST00000569117 ECE2O60344 883 aa12.7□□□□□ -0.38
CDH3-210ENST00000569117 FXR2P51116 673 aaKnown RBP eCLIP12.7□□□□□ -0.38
CDH3-210ENST00000569117 PRELPP51888 382 aa12.7□□□□□ -0.38
CDH3-210ENST00000569117 PI16Q6UXB8 463 aa12.7□□□□□ -0.38
CDH3-210ENST00000569117 ARHGAP27Q6ZUM4 889 aa12.7□□□□□ -0.38
CDH3-210ENST00000569117 PODNQ7Z5L7 613 aa12.7□□□□□ -0.38
CDH3-210ENST00000569117 BOLA2Q9H3K6 86 aa12.7□□□□□ -0.38
CDH3-210ENST00000569117 DBNDD1Q9H9R9 158 aa12.7□□□□□ -0.38
CDH3-210ENST00000569117 IQSEC3Q9UPP2 1182 aaPredicted RBP12.7□□□□□ -0.38
CDH3-210ENST00000569117 FAM205AQ6ZU69 1335 aa12.69□□□□□ -0.38
CDH3-210ENST00000569117 SALL1Q9NSC2 1324 aa12.69□□□□□ -0.38
CDH3-210ENST00000569117 GRIN3BO60391 1043 aa12.69□□□□□ -0.38
CDH3-210ENST00000569117 LMNB1P20700 586 aa12.69□□□□□ -0.38
CDH3-210ENST00000569117 GPR162Q16538 588 aa12.69□□□□□ -0.38
CDH3-210ENST00000569117 DOK7Q18PE1 504 aa12.69□□□□□ -0.38
CDH3-210ENST00000569117 NIM1KQ8IY84 436 aa12.69□□□□□ -0.38
CDH3-210ENST00000569117 PAG1Q9NWQ8 432 aa12.69□□□□□ -0.38
CDH3-210ENST00000569117 UTRNP46939 3433 aa12.69□□□□□ -0.38
CDH3-210ENST00000569117 G3V3G9 751 aa12.68□□□□□ -0.38
CDH3-210ENST00000569117 FRAT2O75474 233 aaPredicted RBP12.68□□□□□ -0.38
CDH3-210ENST00000569117 ZAP70P43403 619 aa12.68□□□□□ -0.38
CDH3-210ENST00000569117 PDE4DQ08499 809 aa12.68□□□□□ -0.38
CDH3-210ENST00000569117 DNAJC2Q99543 621 aaKnown RBP12.68□□□□□ -0.38
CDH3-210ENST00000569117 NDUFB9Q9Y6M9 179 aa12.68□□□□□ -0.38
CDH3-210ENST00000569117 YDJCA8MPS7 323 aa12.67□□□□□ -0.38
CDH3-210ENST00000569117 GOLIM4O00461 696 aa12.67□□□□□ -0.38
CDH3-210ENST00000569117 CYP2E1P05181 493 aaPredicted RBP12.67□□□□□ -0.38
CDH3-210ENST00000569117 SDSP20132 328 aa12.67□□□□□ -0.38
CDH3-210ENST00000569117 TTF1Q15361 905 aaPredicted RBP12.67□□□□□ -0.38
CDH3-210ENST00000569117 CNTROBQ8N137 903 aa12.67□□□□□ -0.38
CDH3-210ENST00000569117 ZGPATQ8N5A5 531 aaKnown RBP12.67□□□□□ -0.38
CDH3-210ENST00000569117 WDR66Q8TBY9 1149 aa12.67□□□□□ -0.38
CDH3-210ENST00000569117 JDP2Q8WYK2 163 aa12.67□□□□□ -0.38
CDH3-210ENST00000569117 EVI5LQ96CN4 794 aa12.67□□□□□ -0.38
CDH3-210ENST00000569117 EDC3Q96F86 508 aaKnown RBP12.67□□□□□ -0.38
CDH3-210ENST00000569117 SNRKQ9NRH2 765 aa12.67□□□□□ -0.38
CDH3-210ENST00000569117 ZNRF3Q9ULT6 936 aa12.67□□□□□ -0.38
CDH3-210ENST00000569117 IGSF3O75054 1194 aa12.66□□□□□ -0.38
CDH3-210ENST00000569117 FKBP1AP62942 108 aaKnown RBP12.66□□□□□ -0.38
CDH3-210ENST00000569117 CHAF1AQ13111 956 aaPredicted RBP12.66□□□□□ -0.38
CDH3-210ENST00000569117 PPP1R15BQ5SWA1 713 aa12.66□□□□□ -0.38
CDH3-210ENST00000569117 STRIP1Q5VSL9 837 aa12.66□□□□□ -0.38
CDH3-210ENST00000569117 TICAM2Q86XR7 235 aa12.66□□□□□ -0.38
CDH3-210ENST00000569117 KBTBD3Q8NAB2 608 aa12.66□□□□□ -0.38
CDH3-210ENST00000569117 TBC1D22AQ8WUA7 517 aa12.66□□□□□ -0.38
CDH3-210ENST00000569117 ANTXR1Q9H6X2 564 aa12.66□□□□□ -0.38
CDH3-210ENST00000569117 ADAMTSL1Q8N6G6 1762 aa12.66□□□□□ -0.38
CDH3-210ENST00000569117 ZC3H4Q9UPT8 1303 aaKnown RBP12.65□□□□□ -0.38
CDH3-210ENST00000569117 MYH2Q9UKX2 1941 aa12.65□□□□□ -0.38
CDH3-210ENST00000569117 USP17L3A6NCW0 530 aa12.65□□□□□ -0.38
CDH3-210ENST00000569117 USP17L4A6NCW7 530 aa12.65□□□□□ -0.38
CDH3-210ENST00000569117 TRIM6-TRIM34B2RNG4 842 aa12.65□□□□□ -0.38
CDH3-210ENST00000569117 FZD9O00144 591 aa12.65□□□□□ -0.38
CDH3-210ENST00000569117 MAP4K4O95819 1239 aaPredicted RBP12.65□□□□□ -0.38
CDH3-210ENST00000569117 GTF2IP78347 998 aa12.65□□□□□ -0.38
CDH3-210ENST00000569117 DACT2Q5SW24 774 aa12.65□□□□□ -0.38
CDH3-210ENST00000569117 USP17L1Q7RTZ2 530 aa12.65□□□□□ -0.38
CDH3-210ENST00000569117 FSD1Q9BTV5 496 aa12.65□□□□□ -0.38
CDH3-210ENST00000569117 TMEM106CQ9BVX2 250 aa12.65□□□□□ -0.38
CDH3-210ENST00000569117 PIH1D3Q9NQM4 214 aaKnown RBP12.65□□□□□ -0.38
CDH3-210ENST00000569117 JAG2Q9Y219 1238 aa12.65□□□□□ -0.38
CDH3-210ENST00000569117 MYO3BQ8WXR4 1341 aa12.64□□□□□ -0.39
CDH3-210ENST00000569117 MFSD14BQ5SR56 506 aa12.64□□□□□ -0.39
CDH3-210ENST00000569117 TTLL5Q6EMB2 1281 aa12.64□□□□□ -0.39
CDH3-210ENST00000569117 TMED8Q6PL24 325 aaPredicted RBP12.64□□□□□ -0.39
CDH3-210ENST00000569117 RILPL2Q969X0 211 aa12.64□□□□□ -0.39
CDH3-210ENST00000569117 GPHNQ9NQX3 736 aaPredicted RBP12.64□□□□□ -0.39
CDH3-210ENST00000569117 RNF181Q9P0P0 153 aa12.64□□□□□ -0.39
CDH3-210ENST00000569117 SUGT1Q9Y2Z0 365 aa12.64□□□□□ -0.39
CDH3-210ENST00000569117 ECM29Q5VYK3 1845 aa12.63□□□□□ -0.39
CDH3-210ENST00000569117 VIL1P09327 827 aaKnown RBP12.63□□□□□ -0.39
CDH3-210ENST00000569117 PRDX5P30044 214 aa12.63□□□□□ -0.39
CDH3-210ENST00000569117 MAP3K12Q12852 859 aa12.63□□□□□ -0.39
CDH3-210ENST00000569117 MKRN3Q13064 507 aaKnown RBP12.63□□□□□ -0.39
CDH3-210ENST00000569117 SPTY2D1Q68D10 685 aaPredicted RBP12.63□□□□□ -0.39
CDH3-210ENST00000569117 TBC1D9Q6ZT07 1266 aa12.63□□□□□ -0.39
CDH3-210ENST00000569117 CERS5Q8N5B7 392 aa12.63□□□□□ -0.39
CDH3-210ENST00000569117 FBXW7Q969H0 707 aa12.63□□□□□ -0.39
CDH3-210ENST00000569117 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.63□□□□□ -0.39
CDH3-210ENST00000569117 KCNQ5Q9NR82 932 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms