RNA–Protein interactions for RNA: ENST00000567674.1

CDH3-206, Transcript of cadherin 3, humanhuman

TSL 3

Gene CDH3, Length 892 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-206ENST00000567674 SALL1Q9NSC2 1324 aa13.9□□□□□ -0.18
CDH3-206ENST00000567674 LDLRAD1Q5T700 205 aa13.9□□□□□ -0.18
CDH3-206ENST00000567674 PRMT6Q96LA8 375 aaPredicted RBP13.9□□□□□ -0.18
CDH3-206ENST00000567674 ZDHHC15Q96MV8 337 aa13.9□□□□□ -0.18
CDH3-206ENST00000567674 TTF2Q9UNY4 1162 aaKnown RBP13.9□□□□□ -0.18
CDH3-206ENST00000567674 LRRFIP2Q9Y608 721 aaKnown RBP13.9□□□□□ -0.18
CDH3-206ENST00000567674 ASTN2O75129 1339 aaPredicted RBP13.9□□□□□ -0.19
CDH3-206ENST00000567674 TNNI2P48788 182 aa13.89□□□□□ -0.19
CDH3-206ENST00000567674 SPDYE2Q495Y8 402 aa13.89□□□□□ -0.19
CDH3-206ENST00000567674 NOM1Q5C9Z4 860 aaKnown RBP13.89□□□□□ -0.19
CDH3-206ENST00000567674 MEIS3Q99687 375 aa13.89□□□□□ -0.19
CDH3-206ENST00000567674 DENND2AQ9ULE3 1009 aa13.89□□□□□ -0.19
CDH3-206ENST00000567674 SRGAP3O43295 1099 aa13.88□□□□□ -0.19
CDH3-206ENST00000567674 BCAR3O75815 825 aa13.88□□□□□ -0.19
CDH3-206ENST00000567674 TM4SF4P48230 202 aa13.88□□□□□ -0.19
CDH3-206ENST00000567674 BCAMP50895 628 aa13.88□□□□□ -0.19
CDH3-206ENST00000567674 ATP2B3Q16720 1220 aa13.88□□□□□ -0.19
CDH3-206ENST00000567674 FAM83AQ86UY5 434 aa13.88□□□□□ -0.19
CDH3-206ENST00000567674 DZIP1LQ8IYY4 767 aaKnown RBP13.88□□□□□ -0.19
CDH3-206ENST00000567674 TEKT1Q969V4 418 aa13.88□□□□□ -0.19
CDH3-206ENST00000567674 CFHR5Q9BXR6 569 aa13.88□□□□□ -0.19
CDH3-206ENST00000567674 CHMP4BQ9H444 224 aaKnown RBP13.88□□□□□ -0.19
CDH3-206ENST00000567674 GPR108Q9NPR9 543 aa13.88□□□□□ -0.19
CDH3-206ENST00000567674 MAP4K4O95819 1239 aaPredicted RBP13.87□□□□□ -0.19
CDH3-206ENST00000567674 ZBTB48P10074 688 aaPredicted RBP13.87□□□□□ -0.19
CDH3-206ENST00000567674 CRKP46108 304 aa13.87□□□□□ -0.19
CDH3-206ENST00000567674 RBM5P52756 815 aaKnown RBP eCLIP13.87□□□□□ -0.19
CDH3-206ENST00000567674 SLF2Q8IX21 1173 aa13.87□□□□□ -0.19
CDH3-206ENST00000567674 KLHDC4Q8TBB5 520 aa13.87□□□□□ -0.19
CDH3-206ENST00000567674 FRAT1Q92837 279 aaPredicted RBP13.87□□□□□ -0.19
CDH3-206ENST00000567674 ECM29Q5VYK3 1845 aa13.87□□□□□ -0.19
CDH3-206ENST00000567674 ALDH1A1P00352 501 aa13.86□□□□□ -0.19
CDH3-206ENST00000567674 IREB2P48200 963 aaKnown RBP13.86□□□□□ -0.19
CDH3-206ENST00000567674 KIF23Q02241 960 aaPredicted RBP13.86□□□□□ -0.19
CDH3-206ENST00000567674 SREBF2Q12772 1141 aa13.86□□□□□ -0.19
CDH3-206ENST00000567674 MVPQ14764 893 aaKnown RBP13.86□□□□□ -0.19
CDH3-206ENST00000567674 RASAL3Q86YV0 1011 aa13.86□□□□□ -0.19
CDH3-206ENST00000567674 FTSJ3Q8IY81 847 aaKnown RBP13.86□□□□□ -0.19
CDH3-206ENST00000567674 CSRNP1Q96S65 589 aa13.86□□□□□ -0.19
CDH3-206ENST00000567674 ZNF70Q9UC06 446 aaPredicted RBP13.86□□□□□ -0.19
CDH3-206ENST00000567674 ARAP2Q8WZ64 1704 aa13.86□□□□□ -0.19
CDH3-206ENST00000567674 RASA3Q14644 834 aa13.85□□□□□ -0.19
CDH3-206ENST00000567674 HABP4Q5JVS0 413 aaKnown RBP13.85□□□□□ -0.19
CDH3-206ENST00000567674 SPTY2D1Q68D10 685 aaPredicted RBP13.85□□□□□ -0.19
CDH3-206ENST00000567674 TMED8Q6PL24 325 aaPredicted RBP13.85□□□□□ -0.19
CDH3-206ENST00000567674 FAM163AQ96GL9 167 aaPredicted RBP13.85□□□□□ -0.19
CDH3-206ENST00000567674 TMOD2Q9NZR1 351 aa13.85□□□□□ -0.19
CDH3-206ENST00000567674 F8W031 263 aaPredicted RBP13.84□□□□□ -0.19
CDH3-206ENST00000567674 ZBTB7BO15156 539 aaPredicted RBP13.84□□□□□ -0.19
CDH3-206ENST00000567674 ATP8B2P98198 1209 aa13.84□□□□□ -0.19
CDH3-206ENST00000567674 G3BP1Q13283 466 aaKnown RBP eCLIP13.84□□□□□ -0.19
CDH3-206ENST00000567674 TTLL12Q14166 644 aaPredicted RBP13.84□□□□□ -0.19
CDH3-206ENST00000567674 POLA2Q14181 598 aa13.84□□□□□ -0.19
CDH3-206ENST00000567674 DLK2Q6UY11 383 aa13.84□□□□□ -0.19
CDH3-206ENST00000567674 CTU1Q7Z7A3 348 aaKnown RBP13.84□□□□□ -0.19
CDH3-206ENST00000567674 ANKRD13AQ8IZ07 590 aa13.84□□□□□ -0.19
CDH3-206ENST00000567674 SSH3Q8TE77 659 aa13.84□□□□□ -0.19
CDH3-206ENST00000567674 SLC10A4Q96EP9 437 aa13.84□□□□□ -0.19
CDH3-206ENST00000567674 RPAP1Q9BWH6 1393 aaPredicted RBP13.83□□□□□ -0.19
CDH3-206ENST00000567674 MANSC4A6NHS7 340 aaPredicted RBP13.83□□□□□ -0.2
CDH3-206ENST00000567674 UBE2Q2LH0YL09 131 aa13.83□□□□□ -0.2
CDH3-206ENST00000567674 CCDC102BQ68D86 513 aa13.83□□□□□ -0.2
CDH3-206ENST00000567674 APOBEC3HQ6NTF7 200 aaKnown RBP13.83□□□□□ -0.2
CDH3-206ENST00000567674 TMEM57Q8N5G2 664 aa13.83□□□□□ -0.2
CDH3-206ENST00000567674 SIL1Q9H173 461 aa13.83□□□□□ -0.2
CDH3-206ENST00000567674 RNF186Q9NXI6 227 aa13.83□□□□□ -0.2
CDH3-206ENST00000567674 NOP58Q9Y2X3 529 aaKnown RBP13.83□□□□□ -0.2
CDH3-206ENST00000567674 A0A1B0GUL7 405 aa13.82□□□□□ -0.2
CDH3-206ENST00000567674 LDHBP07195 334 aaKnown RBP13.82□□□□□ -0.2
CDH3-206ENST00000567674 CHAF1AQ13111 956 aaPredicted RBP13.82□□□□□ -0.2
CDH3-206ENST00000567674 ZNF512BQ96KM6 892 aaPredicted RBP13.82□□□□□ -0.2
CDH3-206ENST00000567674 ZIC5Q96T25 663 aa13.82□□□□□ -0.2
CDH3-206ENST00000567674 TDRD3Q9H7E2 651 aaKnown RBP13.82□□□□□ -0.2
CDH3-206ENST00000567674 VEZTQ9HBM0 779 aa13.82□□□□□ -0.2
CDH3-206ENST00000567674 ANGEL1Q9UNK9 670 aaKnown RBP13.82□□□□□ -0.2
CDH3-206ENST00000567674 USP2O75604 605 aaPredicted RBP13.81□□□□□ -0.2
CDH3-206ENST00000567674 NPM3O75607 178 aaKnown RBP13.81□□□□□ -0.2
CDH3-206ENST00000567674 UQCRFS1P1P0C7P4 283 aa13.81□□□□□ -0.2
CDH3-206ENST00000567674 PKN2Q16513 984 aaKnown RBP13.81□□□□□ -0.2
CDH3-206ENST00000567674 HSP90AB4PQ58FF6 505 aa13.81□□□□□ -0.2
CDH3-206ENST00000567674 SPRYD7Q5W111 196 aa13.81□□□□□ -0.2
CDH3-206ENST00000567674 OTUD7BQ6GQQ9 843 aa13.81□□□□□ -0.2
CDH3-206ENST00000567674 FAM151AQ8WW52 585 aa13.81□□□□□ -0.2
CDH3-206ENST00000567674 CLUAP1Q96AJ1 413 aa13.81□□□□□ -0.2
CDH3-206ENST00000567674 TEPSINQ96N21 525 aa13.81□□□□□ -0.2
CDH3-206ENST00000567674 HPS5Q9UPZ3 1129 aa13.81□□□□□ -0.2
CDH3-206ENST00000567674 PA2G4Q9UQ80 394 aaKnown RBP13.81□□□□□ -0.2
CDH3-206ENST00000567674 CLRN2A0PK11 232 aa13.8□□□□□ -0.2
CDH3-206ENST00000567674 TESPA1A2RU30 521 aaPredicted RBP13.8□□□□□ -0.2
CDH3-206ENST00000567674 TIMM10P62072 90 aa13.8□□□□□ -0.2
CDH3-206ENST00000567674 NBPF12Q5TAG4 269 aaPredicted RBP13.8□□□□□ -0.2
CDH3-206ENST00000567674 PRAMEF18Q5VWM3 479 aa13.8□□□□□ -0.2
CDH3-206ENST00000567674 ERC1Q8IUD2 1116 aa13.8□□□□□ -0.2
CDH3-206ENST00000567674 XAGE2Q96GT9 111 aa13.8□□□□□ -0.2
CDH3-206ENST00000567674 ZCCHC17Q9NP64 241 aaKnown RBP13.8□□□□□ -0.2
CDH3-206ENST00000567674 TRPA1O75762 1119 aa13.79□□□□□ -0.2
CDH3-206ENST00000567674 LDHCP07864 332 aa13.79□□□□□ -0.2
CDH3-206ENST00000567674 ARID4AP29374 1257 aaPredicted RBP13.79□□□□□ -0.2
CDH3-206ENST00000567674 GSTO1P78417 241 aa13.79□□□□□ -0.2
CDH3-206ENST00000567674 MAP3K9P80192 1104 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms