RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 EVI5LQ96CN4 794 aa13.47□□□□□ -0.25
CLN3-224ENST00000566816 ZBED3Q96IU2 234 aaPredicted RBP13.47□□□□□ -0.25
CLN3-224ENST00000566816 MXD3Q9BW11 206 aa13.47□□□□□ -0.25
CLN3-224ENST00000566816 ABCF2Q9UG63 623 aa13.47□□□□□ -0.25
CLN3-224ENST00000566816 TTF2Q9UNY4 1162 aaKnown RBP13.47□□□□□ -0.25
CLN3-224ENST00000566816 GOLIM4O00461 696 aa13.46□□□□□ -0.25
CLN3-224ENST00000566816 ZFYP08048 801 aaPredicted RBP13.46□□□□□ -0.25
CLN3-224ENST00000566816 PRDX5P30044 214 aa13.46□□□□□ -0.25
CLN3-224ENST00000566816 TBC1D9Q6ZT07 1266 aa13.46□□□□□ -0.25
CLN3-224ENST00000566816 MICALL2Q8IY33 904 aa13.46□□□□□ -0.25
CLN3-224ENST00000566816 TEKT1Q969V4 418 aa13.46□□□□□ -0.25
CLN3-224ENST00000566816 ZDHHC15Q96MV8 337 aa13.46□□□□□ -0.25
CLN3-224ENST00000566816 DNAJC2Q99543 621 aaKnown RBP13.46□□□□□ -0.25
CLN3-224ENST00000566816 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.46□□□□□ -0.25
CLN3-224ENST00000566816 BCL11AQ9H165 835 aa13.46□□□□□ -0.25
CLN3-224ENST00000566816 PIH1D3Q9NQM4 214 aaKnown RBP13.46□□□□□ -0.25
CLN3-224ENST00000566816 PGAP2Q9UHJ9 254 aa13.46□□□□□ -0.25
CLN3-224ENST00000566816 JAG2Q9Y219 1238 aa13.46□□□□□ -0.25
CLN3-224ENST00000566816 GTF3C3Q9Y5Q9 886 aa13.46□□□□□ -0.25
CLN3-224ENST00000566816 GAKO14976 1311 aa13.45□□□□□ -0.26
CLN3-224ENST00000566816 YY1P25490 414 aa13.45□□□□□ -0.26
CLN3-224ENST00000566816 EPS15P42566 896 aa13.45□□□□□ -0.26
CLN3-224ENST00000566816 PPP4CP60510 307 aa13.45□□□□□ -0.26
CLN3-224ENST00000566816 MECOMQ03112 1051 aa13.45□□□□□ -0.26
CLN3-224ENST00000566816 UBE3CQ15386 1083 aa13.45□□□□□ -0.26
CLN3-224ENST00000566816 GRIK5Q16478 980 aa13.45□□□□□ -0.26
CLN3-224ENST00000566816 TTC22Q5TAA0 569 aa13.45□□□□□ -0.26
CLN3-224ENST00000566816 CNTROBQ8N137 903 aa13.45□□□□□ -0.26
CLN3-224ENST00000566816 TAF1DQ9H5J8 278 aaPredicted RBP13.45□□□□□ -0.26
CLN3-224ENST00000566816 ANTXR1Q9H6X2 564 aa13.45□□□□□ -0.26
CLN3-224ENST00000566816 MYOZ2Q9NPC6 264 aa13.45□□□□□ -0.26
CLN3-224ENST00000566816 RAI14Q9P0K7 980 aa13.45□□□□□ -0.26
CLN3-224ENST00000566816 PSME4Q14997 1843 aa13.45□□□□□ -0.26
CLN3-224ENST00000566816 AKAP11Q9UKA4 1901 aa13.45□□□□□ -0.26
CLN3-224ENST00000566816 GPR75-ASB3A0A0A6YYF3 556 aa13.44□□□□□ -0.26
CLN3-224ENST00000566816 EPHX2P34913 555 aa13.44□□□□□ -0.26
CLN3-224ENST00000566816 CRKP46108 304 aa13.44□□□□□ -0.26
CLN3-224ENST00000566816 DLGAP5Q15398 846 aa13.44□□□□□ -0.26
CLN3-224ENST00000566816 BMP2KLQ5H9B9 411 aa13.44□□□□□ -0.26
CLN3-224ENST00000566816 TSHZ3Q63HK5 1081 aa13.44□□□□□ -0.26
CLN3-224ENST00000566816 DZIP1Q86YF9 867 aaKnown RBP13.44□□□□□ -0.26
CLN3-224ENST00000566816 RRAGCQ9HB90 399 aa13.44□□□□□ -0.26
CLN3-224ENST00000566816 WDR90Q96KV7 1748 aa13.44□□□□□ -0.26
CLN3-224ENST00000566816 RFX7Q2KHR2 1363 aa13.44□□□□□ -0.26
CLN3-224ENST00000566816 SPDYE2BA6NHP3 402 aa13.43□□□□□ -0.26
CLN3-224ENST00000566816 IDH1O75874 414 aaKnown RBP13.43□□□□□ -0.26
CLN3-224ENST00000566816 BAG3O95817 575 aa13.43□□□□□ -0.26
CLN3-224ENST00000566816 SPDYE6P0CI01 402 aa13.43□□□□□ -0.26
CLN3-224ENST00000566816 ADD2P35612 726 aa13.43□□□□□ -0.26
CLN3-224ENST00000566816 CFAP100Q494V2 611 aa13.43□□□□□ -0.26
CLN3-224ENST00000566816 SLC9C2Q5TAH2 1124 aa13.43□□□□□ -0.26
CLN3-224ENST00000566816 FKBP1CQ5VVH2 108 aa13.43□□□□□ -0.26
CLN3-224ENST00000566816 NAA16Q6N069 864 aaPredicted RBP13.43□□□□□ -0.26
CLN3-224ENST00000566816 APOBEC3HQ6NTF7 200 aaKnown RBP13.43□□□□□ -0.26
CLN3-224ENST00000566816 TIAM2Q8IVF5 1701 aa13.43□□□□□ -0.26
CLN3-224ENST00000566816 ZNF384Q8TF68 577 aa13.43□□□□□ -0.26
CLN3-224ENST00000566816 GPBP1L1Q9HC44 474 aaPredicted RBP13.43□□□□□ -0.26
CLN3-224ENST00000566816 TCRBV5S4A2TA0A5A2 114 aa13.42□□□□□ -0.26
CLN3-224ENST00000566816 F8W031 263 aaPredicted RBP13.42□□□□□ -0.26
CLN3-224ENST00000566816 HIP1O00291 1037 aa13.42□□□□□ -0.26
CLN3-224ENST00000566816 WNT10BO00744 389 aa13.42□□□□□ -0.26
CLN3-224ENST00000566816 RNF113AO15541 343 aaKnown RBP13.42□□□□□ -0.26
CLN3-224ENST00000566816 NPM3O75607 178 aaKnown RBP13.42□□□□□ -0.26
CLN3-224ENST00000566816 PDE6AP16499 860 aa13.42□□□□□ -0.26
CLN3-224ENST00000566816 EDC3Q96F86 508 aaKnown RBP13.42□□□□□ -0.26
CLN3-224ENST00000566816 NDUFB9Q9Y6M9 179 aa13.42□□□□□ -0.26
CLN3-224ENST00000566816 MROH7-TTC4A0A0A0MT08 1334 aa13.41□□□□□ -0.26
CLN3-224ENST00000566816 PITPNM2Q9BZ72 1349 aa13.41□□□□□ -0.26
CLN3-224ENST00000566816 TRIM6-TRIM34B2RNG4 842 aa13.41□□□□□ -0.26
CLN3-224ENST00000566816 MYO1BO43795 1136 aa13.41□□□□□ -0.26
CLN3-224ENST00000566816 GSPT1P15170 499 aaKnown RBP13.41□□□□□ -0.26
CLN3-224ENST00000566816 PLCG2P16885 1265 aa13.41□□□□□ -0.26
CLN3-224ENST00000566816 SDSP20132 328 aa13.41□□□□□ -0.26
CLN3-224ENST00000566816 HIRAP54198 1017 aaPredicted RBP13.41□□□□□ -0.26
CLN3-224ENST00000566816 KIF4BQ2VIQ3 1234 aa13.41□□□□□ -0.26
CLN3-224ENST00000566816 SAMD7Q7Z3H4 446 aa13.41□□□□□ -0.26
CLN3-224ENST00000566816 MAGEB6Q8N7X4 407 aa13.41□□□□□ -0.26
CLN3-224ENST00000566816 PRMT6Q96LA8 375 aaPredicted RBP13.41□□□□□ -0.26
CLN3-224ENST00000566816 DAGLAQ9Y4D2 1042 aa13.41□□□□□ -0.26
CLN3-224ENST00000566816 SCN4AP35499 1836 aa13.41□□□□□ -0.26
CLN3-224ENST00000566816 CYP7A1P22680 504 aa13.4□□□□□ -0.26
CLN3-224ENST00000566816 DIXDC1Q155Q3 683 aa13.4□□□□□ -0.26
CLN3-224ENST00000566816 TBC1D10BQ4KMP7 808 aaPredicted RBP13.4□□□□□ -0.26
CLN3-224ENST00000566816 LDHDQ86WU2 507 aa13.4□□□□□ -0.26
CLN3-224ENST00000566816 ZNF784Q8NCA9 323 aaPredicted RBP13.4□□□□□ -0.26
CLN3-224ENST00000566816 FSD1Q9BTV5 496 aa13.4□□□□□ -0.26
CLN3-224ENST00000566816 NMRK2Q9NPI5 230 aa13.4□□□□□ -0.26
CLN3-224ENST00000566816 ZNF646O15015 1829 aaPredicted RBP13.4□□□□□ -0.26
CLN3-224ENST00000566816 ZNF532Q9HCE3 1301 aa13.39□□□□□ -0.27
CLN3-224ENST00000566816 SHTN1A0MZ66 631 aa13.39□□□□□ -0.27
CLN3-224ENST00000566816 RBM5P52756 815 aaKnown RBP eCLIP13.39□□□□□ -0.27
CLN3-224ENST00000566816 NBPF9Q3BBW0 867 aa13.39□□□□□ -0.27
CLN3-224ENST00000566816 SPDYE2Q495Y8 402 aa13.39□□□□□ -0.27
CLN3-224ENST00000566816 ZMYM1Q5SVZ6 1142 aa13.39□□□□□ -0.27
CLN3-224ENST00000566816 TRPM4Q8TD43 1214 aa13.39□□□□□ -0.27
CLN3-224ENST00000566816 APPBP2Q92624 585 aa13.39□□□□□ -0.27
CLN3-224ENST00000566816 RILPL2Q969X0 211 aa13.39□□□□□ -0.27
CLN3-224ENST00000566816 NOL10Q9BSC4 688 aaKnown RBP13.39□□□□□ -0.27
CLN3-224ENST00000566816 IDI2Q9BXS1 227 aa13.39□□□□□ -0.27
CLN3-224ENST00000566816 HELLSQ9NRZ9 838 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms