RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 ATG9AQ7Z3C6 839 aa21.54■■□□□ 1.04
VPS9D1-203ENST00000563798 CIAO1O76071 339 aa21.53■■□□□ 1.04
VPS9D1-203ENST00000563798 ZBTB48P10074 688 aaPredicted RBP21.53■■□□□ 1.04
VPS9D1-203ENST00000563798 INHBEP58166 350 aa21.53■■□□□ 1.04
VPS9D1-203ENST00000563798 GRIK5Q16478 980 aa21.53■■□□□ 1.04
VPS9D1-203ENST00000563798 LPIN2Q92539 896 aa21.53■■□□□ 1.04
VPS9D1-203ENST00000563798 SLC10A4Q96EP9 437 aa21.53■■□□□ 1.04
VPS9D1-203ENST00000563798 TDRD3Q9H7E2 651 aaKnown RBP21.53■■□□□ 1.04
VPS9D1-203ENST00000563798 FZD1Q9UP38 647 aa21.53■■□□□ 1.04
VPS9D1-203ENST00000563798 ZBTB22O15209 634 aa21.52■■□□□ 1.04
VPS9D1-203ENST00000563798 USP2O75604 605 aaPredicted RBP21.52■■□□□ 1.04
VPS9D1-203ENST00000563798 CTU1Q7Z7A3 348 aaKnown RBP21.52■■□□□ 1.04
VPS9D1-203ENST00000563798 TEPSINQ96N21 525 aa21.52■■□□□ 1.04
VPS9D1-203ENST00000563798 IQSEC3Q9UPP2 1182 aaPredicted RBP21.52■■□□□ 1.04
VPS9D1-203ENST00000563798 LAMB1P07942 1786 aa21.51■■□□□ 1.03
VPS9D1-203ENST00000563798 MANSC4A6NHS7 340 aaPredicted RBP21.51■■□□□ 1.03
VPS9D1-203ENST00000563798 FRAT2O75474 233 aaPredicted RBP21.51■■□□□ 1.03
VPS9D1-203ENST00000563798 IREB2P48200 963 aaKnown RBP21.51■■□□□ 1.03
VPS9D1-203ENST00000563798 INTS3Q68E01 1043 aaKnown RBP21.51■■□□□ 1.03
VPS9D1-203ENST00000563798 TBC1D8O95759 1140 aa21.5■■□□□ 1.03
VPS9D1-203ENST00000563798 ALDH1A1P00352 501 aa21.5■■□□□ 1.03
VPS9D1-203ENST00000563798 SLC5A1P13866 664 aa21.5■■□□□ 1.03
VPS9D1-203ENST00000563798 MKRN3Q13064 507 aaKnown RBP21.5■■□□□ 1.03
VPS9D1-203ENST00000563798 CHAF1AQ13111 956 aaPredicted RBP21.5■■□□□ 1.03
VPS9D1-203ENST00000563798 ANKRD13AQ8IZ07 590 aa21.5■■□□□ 1.03
VPS9D1-203ENST00000563798 WNK4Q96J92 1243 aa21.5■■□□□ 1.03
VPS9D1-203ENST00000563798 CLMNQ96JQ2 1002 aa21.5■■□□□ 1.03
VPS9D1-203ENST00000563798 ZDHHC15Q96MV8 337 aa21.5■■□□□ 1.03
VPS9D1-203ENST00000563798 HHIPL2Q6UWX4 724 aa21.49■■□□□ 1.03
VPS9D1-203ENST00000563798 ZNF296Q8WUU4 475 aaPredicted RBP21.49■■□□□ 1.03
VPS9D1-203ENST00000563798 TEKT1Q969V4 418 aa21.49■■□□□ 1.03
VPS9D1-203ENST00000563798 MAST3O60307 1309 aa21.49■■□□□ 1.03
VPS9D1-203ENST00000563798 GPR25O00155 361 aa21.48■■□□□ 1.03
VPS9D1-203ENST00000563798 TNNI2P48788 182 aa21.48■■□□□ 1.03
VPS9D1-203ENST00000563798 FKBP1CQ5VVH2 108 aa21.48■■□□□ 1.03
VPS9D1-203ENST00000563798 WDR66Q8TBY9 1149 aa21.48■■□□□ 1.03
VPS9D1-203ENST00000563798 COPRSQ9NQ92 184 aa21.48■■□□□ 1.03
VPS9D1-203ENST00000563798 LRRFIP2Q9Y608 721 aaKnown RBP21.48■■□□□ 1.03
VPS9D1-203ENST00000563798 IL15P40933 162 aaPredicted RBP21.47■■□□□ 1.03
VPS9D1-203ENST00000563798 PKN2Q16513 984 aaKnown RBP21.47■■□□□ 1.03
VPS9D1-203ENST00000563798 APOBEC3HQ6NTF7 200 aaKnown RBP21.47■■□□□ 1.03
VPS9D1-203ENST00000563798 MEIS3Q99687 375 aa21.47■■□□□ 1.03
VPS9D1-203ENST00000563798 CEP126Q9P2H0 1117 aa21.47■■□□□ 1.03
VPS9D1-203ENST00000563798 TCP10L2B9ZVM9 353 aa21.46■■□□□ 1.03
VPS9D1-203ENST00000563798 FAM83AQ86UY5 434 aa21.46■■□□□ 1.03
VPS9D1-203ENST00000563798 IFNL1Q8IU54 200 aa21.46■■□□□ 1.03
VPS9D1-203ENST00000563798 TMEM39BQ9GZU3 492 aa21.46■■□□□ 1.03
VPS9D1-203ENST00000563798 TESPA1A2RU30 521 aaPredicted RBP21.45■■□□□ 1.02
VPS9D1-203ENST00000563798 MTX1Q13505 466 aa21.45■■□□□ 1.02
VPS9D1-203ENST00000563798 ATP2B3Q16720 1220 aa21.45■■□□□ 1.02
VPS9D1-203ENST00000563798 CDAN1Q8IWY9 1227 aa21.45■■□□□ 1.02
VPS9D1-203ENST00000563798 SIL1Q9H173 461 aa21.45■■□□□ 1.02
VPS9D1-203ENST00000563798 SEMA3EO15041 775 aa21.44■■□□□ 1.02
VPS9D1-203ENST00000563798 GNAI3P08754 354 aa21.44■■□□□ 1.02
VPS9D1-203ENST00000563798 GJA5P36382 358 aa21.44■■□□□ 1.02
VPS9D1-203ENST00000563798 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.44■■□□□ 1.02
VPS9D1-203ENST00000563798 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.44■■□□□ 1.02
VPS9D1-203ENST00000563798 R3HDMLQ9H3Y0 253 aa21.44■■□□□ 1.02
VPS9D1-203ENST00000563798 SALL1Q9NSC2 1324 aa21.44■■□□□ 1.02
VPS9D1-203ENST00000563798 IGF2BP3O00425 579 aaKnown RBP eCLIP21.43■■□□□ 1.02
VPS9D1-203ENST00000563798 IPO8O15397 1037 aaKnown RBP21.43■■□□□ 1.02
VPS9D1-203ENST00000563798 FKTNO75072 461 aa21.43■■□□□ 1.02
VPS9D1-203ENST00000563798 MLLT1Q03111 559 aaPredicted RBP21.43■■□□□ 1.02
VPS9D1-203ENST00000563798 GNL3LQ9NVN8 582 aaKnown RBP21.43■■□□□ 1.02
VPS9D1-203ENST00000563798 TMOD2Q9NZR1 351 aa21.43■■□□□ 1.02
VPS9D1-203ENST00000563798 SLC34A2O95436 690 aa21.42■■□□□ 1.02
VPS9D1-203ENST00000563798 MAP3K9P80192 1104 aa21.42■■□□□ 1.02
VPS9D1-203ENST00000563798 RPAP1Q9BWH6 1393 aaPredicted RBP21.42■■□□□ 1.02
VPS9D1-203ENST00000563798 OTOFQ9HC10 1997 aa21.42■■□□□ 1.02
VPS9D1-203ENST00000563798 PA2G4Q9UQ80 394 aaKnown RBP21.42■■□□□ 1.02
VPS9D1-203ENST00000563798 TRIM27P14373 513 aa21.41■■□□□ 1.02
VPS9D1-203ENST00000563798 ATF7IPQ6VMQ6 1270 aa21.41■■□□□ 1.02
VPS9D1-203ENST00000563798 HOOK2Q96ED9 719 aa21.41■■□□□ 1.02
VPS9D1-203ENST00000563798 MS4A4AQ96JQ5 239 aa21.41■■□□□ 1.02
VPS9D1-203ENST00000563798 CACNB3P54284 484 aa21.4■■□□□ 1.02
VPS9D1-203ENST00000563798 VGLL4Q14135 290 aa21.4■■□□□ 1.02
VPS9D1-203ENST00000563798 OTUD7BQ6GQQ9 843 aa21.4■■□□□ 1.02
VPS9D1-203ENST00000563798 OPTNQ96CV9 577 aa21.4■■□□□ 1.02
VPS9D1-203ENST00000563798 PTPN18Q99952 460 aa21.4■■□□□ 1.02
VPS9D1-203ENST00000563798 ELP3Q9H9T3 547 aa21.4■■□□□ 1.02
VPS9D1-203ENST00000563798 DENND2AQ9ULE3 1009 aa21.4■■□□□ 1.02
VPS9D1-203ENST00000563798 MYH13Q9UKX3 1938 aa21.39■■□□□ 1.02
VPS9D1-203ENST00000563798 PDS5AQ29RF7 1337 aaKnown RBP21.39■■□□□ 1.01
VPS9D1-203ENST00000563798 HPS5Q9UPZ3 1129 aa21.39■■□□□ 1.01
VPS9D1-203ENST00000563798 DAGLAQ9Y4D2 1042 aa21.39■■□□□ 1.01
VPS9D1-203ENST00000563798 SRGAP3O43295 1099 aa21.38■■□□□ 1.01
VPS9D1-203ENST00000563798 PRDX5P30044 214 aa21.38■■□□□ 1.01
VPS9D1-203ENST00000563798 PHKA1P46020 1223 aa21.38■■□□□ 1.01
VPS9D1-203ENST00000563798 CCDC102BQ68D86 513 aa21.38■■□□□ 1.01
VPS9D1-203ENST00000563798 FBXO46Q6PJ61 603 aaPredicted RBP21.38■■□□□ 1.01
VPS9D1-203ENST00000563798 BCAR3O75815 825 aa21.37■■□□□ 1.01
VPS9D1-203ENST00000563798 LDHBP07195 334 aaKnown RBP21.37■■□□□ 1.01
VPS9D1-203ENST00000563798 FAM151AQ8WW52 585 aa21.37■■□□□ 1.01
VPS9D1-203ENST00000563798 AKAP2Q9Y2D5 859 aa21.37■■□□□ 1.01
VPS9D1-203ENST00000563798 CSADQ9Y600 493 aa21.37■■□□□ 1.01
VPS9D1-203ENST00000563798 SPDYE5A6NIY4 337 aa21.36■■□□□ 1.01
VPS9D1-203ENST00000563798 ADORA1P30542 326 aa21.36■■□□□ 1.01
VPS9D1-203ENST00000563798 GTF2A2P52657 109 aa21.36■■□□□ 1.01
VPS9D1-203ENST00000563798 DIXDC1Q155Q3 683 aa21.36■■□□□ 1.01
VPS9D1-203ENST00000563798 CDC42EP5Q6NZY7 148 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms