RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 USP17L7P0C7H9 530 aa6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 GPC1P35052 558 aa6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 CTSOP43234 321 aaPredicted RBP6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 MCL1Q07820 350 aa6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 IFRD2Q12894 506 aaPredicted RBP6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 KSR2Q6VAB6 950 aa6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 EPS8L3Q8TE67 593 aaKnown RBP6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 PPCSQ9HAB8 311 aa6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 CASS4Q9NQ75 786 aa6.6□□□□□ -1.35
VPS35P1-201ENST00000563400 RAPGEF6Q8TEU7 1601 aa6.59□□□□□ -1.35
VPS35P1-201ENST00000563400 WDR7Q9Y4E6 1490 aa6.59□□□□□ -1.35
VPS35P1-201ENST00000563400 ASXL2Q76L83 1435 aa6.59□□□□□ -1.35
VPS35P1-201ENST00000563400 A6NHS1 94 aa6.59□□□□□ -1.35
VPS35P1-201ENST00000563400 MINDY4BA8MYZ0 360 aa6.59□□□□□ -1.35
VPS35P1-201ENST00000563400 MEN1O00255 615 aa6.59□□□□□ -1.35
VPS35P1-201ENST00000563400 ASMTLO95671 621 aa6.59□□□□□ -1.35
VPS35P1-201ENST00000563400 GNRH1P01148 92 aa6.59□□□□□ -1.35
VPS35P1-201ENST00000563400 TSPY4P0CV99 314 aa6.59□□□□□ -1.35
VPS35P1-201ENST00000563400 TSPY10P0CW01 314 aa6.59□□□□□ -1.35
VPS35P1-201ENST00000563400 SOX9P48436 509 aa6.59□□□□□ -1.35
VPS35P1-201ENST00000563400 ST13P50502 369 aaKnown RBP6.59□□□□□ -1.35
VPS35P1-201ENST00000563400 POU5F1BQ06416 359 aa6.59□□□□□ -1.35
VPS35P1-201ENST00000563400 LYSMD3Q7Z3D4 306 aa6.59□□□□□ -1.35
VPS35P1-201ENST00000563400 PCGF5Q86SE9 256 aa6.59□□□□□ -1.35
VPS35P1-201ENST00000563400 MYO1HQ8N1T3 1032 aa6.59□□□□□ -1.35
VPS35P1-201ENST00000563400 CPLX3Q8WVH0 158 aa6.59□□□□□ -1.35
VPS35P1-201ENST00000563400 LIG1P18858 919 aa6.58□□□□□ -1.36
VPS35P1-201ENST00000563400 MCCP23508 829 aa6.58□□□□□ -1.36
VPS35P1-201ENST00000563400 GTF2E1P29083 439 aaPredicted RBP6.58□□□□□ -1.36
VPS35P1-201ENST00000563400 RNF144AP50876 292 aaPredicted RBP6.58□□□□□ -1.36
VPS35P1-201ENST00000563400 RAB27AP51159 221 aa6.58□□□□□ -1.36
VPS35P1-201ENST00000563400 EPHA4P54764 986 aa6.58□□□□□ -1.36
VPS35P1-201ENST00000563400 INSM1Q01101 510 aaPredicted RBP6.58□□□□□ -1.36
VPS35P1-201ENST00000563400 PTSQ03393 145 aa6.58□□□□□ -1.36
VPS35P1-201ENST00000563400 USPL1Q5W0Q7 1092 aa6.58□□□□□ -1.36
VPS35P1-201ENST00000563400 ZNF280DQ6N043 979 aa6.58□□□□□ -1.36
VPS35P1-201ENST00000563400 PODNQ7Z5L7 613 aa6.58□□□□□ -1.36
VPS35P1-201ENST00000563400 UBR7Q8N806 425 aa6.58□□□□□ -1.36
VPS35P1-201ENST00000563400 ABTB2Q8N961 1025 aa6.58□□□□□ -1.36
VPS35P1-201ENST00000563400 TTC8Q8TAM2 541 aa6.58□□□□□ -1.36
VPS35P1-201ENST00000563400 RNF217Q8TC41 542 aa6.58□□□□□ -1.36
VPS35P1-201ENST00000563400 PAGR1Q9BTK6 254 aa6.58□□□□□ -1.36
VPS35P1-201ENST00000563400 CFDP1Q9UEE9 299 aaPredicted RBP6.58□□□□□ -1.36
VPS35P1-201ENST00000563400 ABCC10Q5T3U5 1492 aa6.58□□□□□ -1.36
VPS35P1-201ENST00000563400 CD109Q6YHK3 1445 aa6.58□□□□□ -1.36
VPS35P1-201ENST00000563400 ABCA8O94911 1581 aa6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 PDPK1O15530 556 aa6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 PPP1R12BO60237 982 aaPredicted RBP6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 VEGFBP49765 207 aa6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 C2orf27AQ580R0 203 aa6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 ESCO1Q5FWF5 840 aa6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 SLC27A3Q5K4L6 730 aa6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 LCE2AQ5TA79 106 aaPredicted RBP6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 SLC4A10Q6U841 1118 aa6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 CCDC81Q6ZN84 652 aa6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 THNSL2Q86YJ6 484 aa6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 ETFBKMTQ8IXQ9 262 aa6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 FAM169BQ8N8A8 192 aa6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 PPM1EQ8WY54 764 aa6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 INO80BQ9C086 356 aaPredicted RBP6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 RBSNQ9H1K0 784 aa6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 PTPRHQ9HD43 1115 aa6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 KLF15Q9UIH9 416 aa6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 STRIP2Q9ULQ0 834 aa6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 MAP3K1Q13233 1512 aa6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 ATP10BO94823 1461 aa6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 CCNB3Q8WWL7 1395 aa6.57□□□□□ -1.36
VPS35P1-201ENST00000563400 EPRSP07814 1512 aaKnown RBP6.56□□□□□ -1.36
VPS35P1-201ENST00000563400 WIPF1O43516 503 aa6.56□□□□□ -1.36
VPS35P1-201ENST00000563400 PPFIA3O75145 1194 aa6.56□□□□□ -1.36
VPS35P1-201ENST00000563400 SCTRP47872 440 aa6.56□□□□□ -1.36
VPS35P1-201ENST00000563400 CLN3Q13286 438 aa6.56□□□□□ -1.36
VPS35P1-201ENST00000563400 SEPT6Q14141 434 aa6.56□□□□□ -1.36
VPS35P1-201ENST00000563400 TCEA2Q15560 299 aa6.56□□□□□ -1.36
VPS35P1-201ENST00000563400 DDR2Q16832 855 aa6.56□□□□□ -1.36
VPS35P1-201ENST00000563400 TRIM56Q9BRZ2 755 aaKnown RBP6.56□□□□□ -1.36
VPS35P1-201ENST00000563400 C2orf49Q9BVC5 232 aaPredicted RBP6.56□□□□□ -1.36
VPS35P1-201ENST00000563400 GGNBP2Q9H3C7 697 aa6.56□□□□□ -1.36
VPS35P1-201ENST00000563400 JADE2Q9NQC1 790 aa6.56□□□□□ -1.36
VPS35P1-201ENST00000563400 ZIM2Q9NZV7 527 aa6.56□□□□□ -1.36
VPS35P1-201ENST00000563400 FAM8A1Q9UBU6 413 aa6.56□□□□□ -1.36
VPS35P1-201ENST00000563400 SERTAD1Q9UHV2 236 aa6.56□□□□□ -1.36
VPS35P1-201ENST00000563400 TROQ12816 1431 aaPredicted RBP6.56□□□□□ -1.36
VPS35P1-201ENST00000563400 SETD1BQ9UPS6 1966 aaKnown RBP6.56□□□□□ -1.36
VPS35P1-201ENST00000563400 PLEKHH2Q8IVE3 1493 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 TBX3O15119 743 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 TRIM37O94972 964 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 MYCLP1P12525 358 aaPredicted RBP6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 SCNN1DP51172 638 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 NFKB2Q00653 900 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 MYBPC2Q14324 1141 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 INO80DQ53TQ3 878 aaPredicted RBP6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 PAF1Q8N7H5 531 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 KDF1Q8NAX2 398 aaPredicted RBP6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 SVIPQ8NHG7 77 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 ZNF296Q8WUU4 475 aaPredicted RBP6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 CHAC2Q8WUX2 184 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 SHDQ96IW2 340 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms