RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 FAM84BQ96KN1 310 aaPredicted RBP17.53■□□□□ 0.4
LDLR-213ENST00000560502 PUS3Q9BZE2 481 aaKnown RBP17.53■□□□□ 0.4
LDLR-213ENST00000560502 SERPINA10Q9UK55 444 aa17.53■□□□□ 0.4
LDLR-213ENST00000560502 KIF16BQ96L93 1317 aa17.52■□□□□ 0.4
LDLR-213ENST00000560502 HIBADHP31937 336 aaKnown RBP17.52■□□□□ 0.4
LDLR-213ENST00000560502 IREB2P48200 963 aaKnown RBP17.52■□□□□ 0.4
LDLR-213ENST00000560502 ANKRD13AQ8IZ07 590 aa17.52■□□□□ 0.4
LDLR-213ENST00000560502 TEPSINQ96N21 525 aa17.52■□□□□ 0.4
LDLR-213ENST00000560502 ZNF70Q9UC06 446 aaPredicted RBP17.52■□□□□ 0.4
LDLR-213ENST00000560502 TTF2Q9UNY4 1162 aaKnown RBP17.52■□□□□ 0.4
LDLR-213ENST00000560502 RIPOR2Q9Y4F9 1068 aa17.52■□□□□ 0.4
LDLR-213ENST00000560502 HTTP42858 3142 aa17.52■□□□□ 0.39
LDLR-213ENST00000560502 TESPA1A2RU30 521 aaPredicted RBP17.51■□□□□ 0.39
LDLR-213ENST00000560502 NBPF7P0C2Y1 421 aaPredicted RBP17.51■□□□□ 0.39
LDLR-213ENST00000560502 RBM5P52756 815 aaKnown RBP eCLIP17.51■□□□□ 0.39
LDLR-213ENST00000560502 IRX6P78412 446 aaPredicted RBP17.51■□□□□ 0.39
LDLR-213ENST00000560502 TNFAIP1Q13829 316 aa17.51■□□□□ 0.39
LDLR-213ENST00000560502 RABL6Q3YEC7 729 aaPredicted RBP17.51■□□□□ 0.39
LDLR-213ENST00000560502 SLC4A10Q6U841 1118 aa17.51■□□□□ 0.39
LDLR-213ENST00000560502 OTOP1Q7RTM1 612 aa17.51■□□□□ 0.39
LDLR-213ENST00000560502 CDAN1Q8IWY9 1227 aa17.51■□□□□ 0.39
LDLR-213ENST00000560502 KIAA0100Q14667 2235 aaKnown RBP17.51■□□□□ 0.39
LDLR-213ENST00000560502 AAMPQ13685 434 aa17.5■□□□□ 0.39
LDLR-213ENST00000560502 PTPN18Q99952 460 aa17.5■□□□□ 0.39
LDLR-213ENST00000560502 TDRD3Q9H7E2 651 aaKnown RBP17.5■□□□□ 0.39
LDLR-213ENST00000560502 MROH5Q6ZUA9 1318 aa17.49■□□□□ 0.39
LDLR-213ENST00000560502 CRKP46108 304 aa17.49■□□□□ 0.39
LDLR-213ENST00000560502 CRHR2Q13324 411 aa17.49■□□□□ 0.39
LDLR-213ENST00000560502 GRIK5Q16478 980 aa17.49■□□□□ 0.39
LDLR-213ENST00000560502 FBXO33Q7Z6M2 555 aa17.49■□□□□ 0.39
LDLR-213ENST00000560502 DZIP1LQ8IYY4 767 aaKnown RBP17.49■□□□□ 0.39
LDLR-213ENST00000560502 ANKRD44Q8N8A2 993 aa17.49■□□□□ 0.39
LDLR-213ENST00000560502 VGLL2Q8N8G2 317 aa17.49■□□□□ 0.39
LDLR-213ENST00000560502 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.49■□□□□ 0.39
LDLR-213ENST00000560502 TRIM17Q9Y577 477 aa17.49■□□□□ 0.39
LDLR-213ENST00000560502 MYH13Q9UKX3 1938 aa17.49■□□□□ 0.39
LDLR-213ENST00000560502 BCAR3O75815 825 aa17.48■□□□□ 0.39
LDLR-213ENST00000560502 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.48■□□□□ 0.39
LDLR-213ENST00000560502 ERO1AQ96HE7 468 aa17.48■□□□□ 0.39
LDLR-213ENST00000560502 BICC1Q9H694 974 aaKnown RBP17.48■□□□□ 0.39
LDLR-213ENST00000560502 ELP3Q9H9T3 547 aa17.48■□□□□ 0.39
LDLR-213ENST00000560502 SMC4Q9NTJ3 1288 aa17.48■□□□□ 0.39
LDLR-213ENST00000560502 IPO8O15397 1037 aaKnown RBP17.47■□□□□ 0.39
LDLR-213ENST00000560502 CAP1Q01518 475 aa17.47■□□□□ 0.39
LDLR-213ENST00000560502 OTUD7BQ6GQQ9 843 aa17.47■□□□□ 0.39
LDLR-213ENST00000560502 OPTNQ96CV9 577 aa17.47■□□□□ 0.39
LDLR-213ENST00000560502 MS4A4AQ96JQ5 239 aa17.47■□□□□ 0.39
LDLR-213ENST00000560502 HDLBPQ00341 1268 aaKnown RBP17.46■□□□□ 0.39
LDLR-213ENST00000560502 LRRC24Q50LG9 513 aa17.46■□□□□ 0.39
LDLR-213ENST00000560502 MRPL50Q8N5N7 158 aaKnown RBP17.46■□□□□ 0.39
LDLR-213ENST00000560502 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.46■□□□□ 0.39
LDLR-213ENST00000560502 CD99L2Q8TCZ2 262 aa17.46■□□□□ 0.39
LDLR-213ENST00000560502 TMEM39BQ9GZU3 492 aa17.46■□□□□ 0.39
LDLR-213ENST00000560502 PCDH10Q9P2E7 1040 aa17.46■□□□□ 0.39
LDLR-213ENST00000560502 TCP10L2B9ZVM9 353 aa17.45■□□□□ 0.38
LDLR-213ENST00000560502 VGLL4Q14135 290 aa17.45■□□□□ 0.38
LDLR-213ENST00000560502 ZKSCAN2Q63HK3 967 aa17.45■□□□□ 0.38
LDLR-213ENST00000560502 INTS3Q68E01 1043 aaKnown RBP17.45■□□□□ 0.38
LDLR-213ENST00000560502 CNKSR2Q8WXI2 1034 aa17.45■□□□□ 0.38
LDLR-213ENST00000560502 BRI3BPQ8WY22 251 aa17.45■□□□□ 0.38
LDLR-213ENST00000560502 SSH1Q8WYL5 1049 aa17.45■□□□□ 0.38
LDLR-213ENST00000560502 IQSEC3Q9UPP2 1182 aaPredicted RBP17.45■□□□□ 0.38
LDLR-213ENST00000560502 PTPN22Q9Y2R2 807 aa17.45■□□□□ 0.38
LDLR-213ENST00000560502 PDE8BO95263 885 aa17.44■□□□□ 0.38
LDLR-213ENST00000560502 TNNI2P48788 182 aa17.44■□□□□ 0.38
LDLR-213ENST00000560502 MAP3K9P80192 1104 aa17.44■□□□□ 0.38
LDLR-213ENST00000560502 METTL24Q5JXM2 366 aa17.44■□□□□ 0.38
LDLR-213ENST00000560502 TBC1D22AQ8WUA7 517 aa17.44■□□□□ 0.38
LDLR-213ENST00000560502 ARHGAP45Q92619 1136 aa17.44■□□□□ 0.38
LDLR-213ENST00000560502 ARMC5Q96C12 935 aa17.44■□□□□ 0.38
LDLR-213ENST00000560502 POTEFA5A3E0 1075 aa17.43■□□□□ 0.38
LDLR-213ENST00000560502 SP3Q02447 781 aa17.43■□□□□ 0.38
LDLR-213ENST00000560502 CHAF1AQ13111 956 aaPredicted RBP17.43■□□□□ 0.38
LDLR-213ENST00000560502 VPS37DQ86XT2 251 aa17.43■□□□□ 0.38
LDLR-213ENST00000560502 ZDHHC15Q96MV8 337 aa17.43■□□□□ 0.38
LDLR-213ENST00000560502 MRIQ9BWK5 157 aa17.43■□□□□ 0.38
LDLR-213ENST00000560502 PTPRCP08575 1304 aa17.43■□□□□ 0.38
LDLR-213ENST00000560502 ZSWIM8A7E2V4 1837 aa17.42■□□□□ 0.38
LDLR-213ENST00000560502 RPAP1Q9BWH6 1393 aaPredicted RBP17.42■□□□□ 0.38
LDLR-213ENST00000560502 SPDYE5A6NIY4 337 aa17.42■□□□□ 0.38
LDLR-213ENST00000560502 FGFR2P21802 821 aa17.42■□□□□ 0.38
LDLR-213ENST00000560502 CAVIN4Q5BKX8 364 aa17.42■□□□□ 0.38
LDLR-213ENST00000560502 KLHDC4Q8TBB5 520 aa17.42■□□□□ 0.38
LDLR-213ENST00000560502 TEKT1Q969V4 418 aa17.42■□□□□ 0.38
LDLR-213ENST00000560502 CRBNQ96SW2 442 aa17.42■□□□□ 0.38
LDLR-213ENST00000560502 EFCC1Q9HA90 598 aa17.42■□□□□ 0.38
LDLR-213ENST00000560502 CCL15-CCL14A0A0B4J2E2 113 aa17.41■□□□□ 0.38
LDLR-213ENST00000560502 BCAMP50895 628 aa17.41■□□□□ 0.38
LDLR-213ENST00000560502 GTF2A2P52657 109 aa17.41■□□□□ 0.38
LDLR-213ENST00000560502 CACNB3P54284 484 aa17.41■□□□□ 0.38
LDLR-213ENST00000560502 CCL15Q16663 113 aa17.41■□□□□ 0.38
LDLR-213ENST00000560502 FKBP1CQ5VVH2 108 aa17.41■□□□□ 0.38
LDLR-213ENST00000560502 APOBEC3HQ6NTF7 200 aaKnown RBP17.41■□□□□ 0.38
LDLR-213ENST00000560502 ATF7IPQ6VMQ6 1270 aa17.41■□□□□ 0.38
LDLR-213ENST00000560502 FAM83AQ86UY5 434 aa17.41■□□□□ 0.38
LDLR-213ENST00000560502 EXOC6Q8TAG9 804 aa17.41■□□□□ 0.38
LDLR-213ENST00000560502 FRAT1Q92837 279 aaPredicted RBP17.41■□□□□ 0.38
LDLR-213ENST00000560502 USP44Q9H0E7 712 aa17.41■□□□□ 0.38
LDLR-213ENST00000560502 SUGT1Q9Y2Z0 365 aa17.41■□□□□ 0.38
LDLR-213ENST00000560502 CSADQ9Y600 493 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms