RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 TTC22Q5TAA0 569 aa15.59■□□□□ 0.09
SHMT2-227ENST00000557269 ERICH6Q7L0X2 663 aa15.59■□□□□ 0.09
SHMT2-227ENST00000557269 SAMD7Q7Z3H4 446 aa15.59■□□□□ 0.09
SHMT2-227ENST00000557269 ZGPATQ8N5A5 531 aaKnown RBP15.59■□□□□ 0.09
SHMT2-227ENST00000557269 RRAGCQ9HB90 399 aa15.59■□□□□ 0.09
SHMT2-227ENST00000557269 NMRK2Q9NPI5 230 aa15.59■□□□□ 0.09
SHMT2-227ENST00000557269 RAI14Q9P0K7 980 aa15.59■□□□□ 0.09
SHMT2-227ENST00000557269 LRP2BPQ9P2M1 347 aa15.59■□□□□ 0.09
SHMT2-227ENST00000557269 WDR90Q96KV7 1748 aa15.59■□□□□ 0.09
SHMT2-227ENST00000557269 ADAMTSL1Q8N6G6 1762 aa15.58■□□□□ 0.08
SHMT2-227ENST00000557269 IDH1O75874 414 aaKnown RBP15.58■□□□□ 0.08
SHMT2-227ENST00000557269 YY1P25490 414 aa15.58■□□□□ 0.08
SHMT2-227ENST00000557269 SPTY2D1Q68D10 685 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-227ENST00000557269 NSUN4Q96CB9 384 aaKnown RBP15.58■□□□□ 0.08
SHMT2-227ENST00000557269 SUGT1Q9Y2Z0 365 aa15.58■□□□□ 0.08
SHMT2-227ENST00000557269 HIRAP54198 1017 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-227ENST00000557269 TTF1Q15361 905 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-227ENST00000557269 TBC1D10BQ4KMP7 808 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-227ENST00000557269 RBM26Q5T8P6 1007 aaKnown RBP15.57■□□□□ 0.08
SHMT2-227ENST00000557269 ADGRA1Q86SQ6 560 aa15.57■□□□□ 0.08
SHMT2-227ENST00000557269 TRPM4Q8TD43 1214 aa15.57■□□□□ 0.08
SHMT2-227ENST00000557269 HACL1Q9UJ83 578 aa15.57■□□□□ 0.08
SHMT2-227ENST00000557269 DOCK2Q92608 1830 aa15.57■□□□□ 0.08
SHMT2-227ENST00000557269 H7C1D1 291 aa15.56■□□□□ 0.08
SHMT2-227ENST00000557269 LMOD1P29536 600 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-227ENST00000557269 CRKP46108 304 aa15.56■□□□□ 0.08
SHMT2-227ENST00000557269 DZIP1Q86YF9 867 aaKnown RBP15.56■□□□□ 0.08
SHMT2-227ENST00000557269 OGFOD1Q8N543 542 aa15.56■□□□□ 0.08
SHMT2-227ENST00000557269 MAGEB6Q8N7X4 407 aa15.56■□□□□ 0.08
SHMT2-227ENST00000557269 KBTBD3Q8NAB2 608 aa15.56■□□□□ 0.08
SHMT2-227ENST00000557269 TAF1DQ9H5J8 278 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-227ENST00000557269 MYOZ2Q9NPC6 264 aa15.56■□□□□ 0.08
SHMT2-227ENST00000557269 ASTN2O75129 1339 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-227ENST00000557269 PDE6AP16499 860 aa15.55■□□□□ 0.08
SHMT2-227ENST00000557269 SDSP20132 328 aa15.55■□□□□ 0.08
SHMT2-227ENST00000557269 EPHX2P34913 555 aa15.55■□□□□ 0.08
SHMT2-227ENST00000557269 MAP3K12Q12852 859 aa15.55■□□□□ 0.08
SHMT2-227ENST00000557269 CFAP100Q494V2 611 aa15.55■□□□□ 0.08
SHMT2-227ENST00000557269 SLC9C2Q5TAH2 1124 aa15.55■□□□□ 0.08
SHMT2-227ENST00000557269 EVI5LQ96CN4 794 aa15.55■□□□□ 0.08
SHMT2-227ENST00000557269 ZBED3Q96IU2 234 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-227ENST00000557269 PRMT6Q96LA8 375 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-227ENST00000557269 SERPINA10Q9UK55 444 aa15.55■□□□□ 0.08
SHMT2-227ENST00000557269 HDAC9Q9UKV0 1011 aa15.55■□□□□ 0.08
SHMT2-227ENST00000557269 DAGLAQ9Y4D2 1042 aa15.55■□□□□ 0.08
SHMT2-227ENST00000557269 TCRBV5S4A2TA0A5A2 114 aa15.54■□□□□ 0.08
SHMT2-227ENST00000557269 TRIM6-TRIM34B2RNG4 842 aa15.54■□□□□ 0.08
SHMT2-227ENST00000557269 VEGFAP15692 232 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-227ENST00000557269 CYP7A1P22680 504 aa15.54■□□□□ 0.08
SHMT2-227ENST00000557269 ADD2P35612 726 aa15.54■□□□□ 0.08
SHMT2-227ENST00000557269 RBM5P52756 815 aaKnown RBP eCLIP15.54■□□□□ 0.08
SHMT2-227ENST00000557269 HDLBPQ00341 1268 aaKnown RBP15.54■□□□□ 0.08
SHMT2-227ENST00000557269 KIF4BQ2VIQ3 1234 aa15.54■□□□□ 0.08
SHMT2-227ENST00000557269 NBPF9Q3BBW0 867 aa15.54■□□□□ 0.08
SHMT2-227ENST00000557269 NAA16Q6N069 864 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-227ENST00000557269 APOBEC3HQ6NTF7 200 aaKnown RBP15.54■□□□□ 0.08
SHMT2-227ENST00000557269 TEKT1Q969V4 418 aa15.54■□□□□ 0.08
SHMT2-227ENST00000557269 RILPL2Q969X0 211 aa15.54■□□□□ 0.08
SHMT2-227ENST00000557269 MRIQ9BWK5 157 aa15.54■□□□□ 0.08
SHMT2-227ENST00000557269 ADARB2Q9NS39 739 aaKnown RBP15.54■□□□□ 0.08
SHMT2-227ENST00000557269 GAKO14976 1311 aa15.53■□□□□ 0.08
SHMT2-227ENST00000557269 MAST3O60307 1309 aa15.53■□□□□ 0.08
SHMT2-227ENST00000557269 ZNF532Q9HCE3 1301 aa15.53■□□□□ 0.08
SHMT2-227ENST00000557269 SCN4AP35499 1836 aa15.53■□□□□ 0.08
SHMT2-227ENST00000557269 IQCA1LA6NCM1 817 aa15.53■□□□□ 0.08
SHMT2-227ENST00000557269 POTEIP0CG38 1075 aa15.53■□□□□ 0.08
SHMT2-227ENST00000557269 POTEJP0CG39 1038 aa15.53■□□□□ 0.08
SHMT2-227ENST00000557269 DLGAP5Q15398 846 aa15.53■□□□□ 0.08
SHMT2-227ENST00000557269 HHIPL2Q6UWX4 724 aa15.53■□□□□ 0.08
SHMT2-227ENST00000557269 MTMR14Q8NCE2 650 aa15.53■□□□□ 0.08
SHMT2-227ENST00000557269 FAM163AQ96GL9 167 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-227ENST00000557269 ZDHHC15Q96MV8 337 aa15.53■□□□□ 0.08
SHMT2-227ENST00000557269 FSD1Q9BTV5 496 aa15.53■□□□□ 0.08
SHMT2-227ENST00000557269 MAST2Q6P0Q8 1798 aa15.52■□□□□ 0.08
SHMT2-227ENST00000557269 MROH7-TTC4A0A0A0MT08 1334 aa15.52■□□□□ 0.08
SHMT2-227ENST00000557269 SPDYE2BA6NHP3 402 aa15.52■□□□□ 0.08
SHMT2-227ENST00000557269 WNT10BO00744 389 aa15.52■□□□□ 0.08
SHMT2-227ENST00000557269 SPDYE6P0CI01 402 aa15.52■□□□□ 0.08
SHMT2-227ENST00000557269 GSTO1P78417 241 aa15.52■□□□□ 0.08
SHMT2-227ENST00000557269 CNTROBQ8N137 903 aa15.52■□□□□ 0.08
SHMT2-227ENST00000557269 ZNF784Q8NCA9 323 aaPredicted RBP15.52■□□□□ 0.08
SHMT2-227ENST00000557269 GPBP1L1Q9HC44 474 aaPredicted RBP15.52■□□□□ 0.08
SHMT2-227ENST00000557269 MYH2Q9UKX2 1941 aa15.51■□□□□ 0.07
SHMT2-227ENST00000557269 GPR75-ASB3A0A0A6YYF3 556 aa15.51■□□□□ 0.07
SHMT2-227ENST00000557269 RNF113AO15541 343 aaKnown RBP15.51■□□□□ 0.07
SHMT2-227ENST00000557269 BTDP43251 543 aa15.51■□□□□ 0.07
SHMT2-227ENST00000557269 MMP14P50281 582 aa15.51■□□□□ 0.07
SHMT2-227ENST00000557269 DYNLL1P63167 89 aaKnown RBP15.51■□□□□ 0.07
SHMT2-227ENST00000557269 EAPPQ56P03 285 aaPredicted RBP15.51■□□□□ 0.07
SHMT2-227ENST00000557269 USP50Q70EL3 339 aaPredicted RBP15.51■□□□□ 0.07
SHMT2-227ENST00000557269 MIGA1Q8NAN2 632 aa15.51■□□□□ 0.07
SHMT2-227ENST00000557269 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.51■□□□□ 0.071e-6■■□□□ 11.9
SHMT2-227ENST00000557269 TDRD3Q9H7E2 651 aaKnown RBP15.51■□□□□ 0.07
SHMT2-227ENST00000557269 SCAF8Q9UPN6 1271 aaKnown RBP15.51■□□□□ 0.07
SHMT2-227ENST00000557269 CLRN2A0PK11 232 aa15.5■□□□□ 0.07
SHMT2-227ENST00000557269 KIF3CO14782 793 aa15.5■□□□□ 0.07
SHMT2-227ENST00000557269 LDHCP07864 332 aa15.5■□□□□ 0.07
SHMT2-227ENST00000557269 UBE3CQ15386 1083 aa15.5■□□□□ 0.07
SHMT2-227ENST00000557269 BMP2KLQ5H9B9 411 aa15.5■□□□□ 0.07
SHMT2-227ENST00000557269 CDC42EP5Q6NZY7 148 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms