RNA–Protein interactions for RNA: ENST00000556994.5

SRP54-213, Transcript of signal recognition particle 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SRP54, Length 2,327 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-213ENST00000556994 PI16Q6UXB8 463 aa13.21□□□□□ -0.3
SRP54-213ENST00000556994 CCDC150Q8NCX0 1101 aa13.21□□□□□ -0.3
SRP54-213ENST00000556994 PUS7LQ9H0K6 701 aaKnown RBP13.21□□□□□ -0.3
SRP54-213ENST00000556994 KIF2AO00139 706 aaPredicted RBP13.2□□□□□ -0.3
SRP54-213ENST00000556994 YEATS4O95619 227 aa13.2□□□□□ -0.3
SRP54-213ENST00000556994 EVCP57679 992 aa13.2□□□□□ -0.3
SRP54-213ENST00000556994 SCARF1Q14162 830 aa13.2□□□□□ -0.3
SRP54-213ENST00000556994 NKX2-3Q8TAU0 364 aa13.2□□□□□ -0.3
SRP54-213ENST00000556994 DCAF5Q96JK2 942 aa13.2□□□□□ -0.3
SRP54-213ENST00000556994 BPIFA3Q9BQP9 254 aa13.2□□□□□ -0.3
SRP54-213ENST00000556994 TPM4P67936 248 aa13.19□□□□□ -0.3
SRP54-213ENST00000556994 KIF23Q02241 960 aaPredicted RBP13.19□□□□□ -0.3
SRP54-213ENST00000556994 TTC39AQ5SRH9 613 aa13.19□□□□□ -0.3
SRP54-213ENST00000556994 MB21D2Q8IYB1 491 aaPredicted RBP13.19□□□□□ -0.3
SRP54-213ENST00000556994 HSD3B7Q9H2F3 369 aa13.19□□□□□ -0.3
SRP54-213ENST00000556994 L2HGDHQ9H9P8 463 aa13.19□□□□□ -0.3
SRP54-213ENST00000556994 GPR108Q9NPR9 543 aa13.19□□□□□ -0.3
SRP54-213ENST00000556994 DNAI1Q9UI46 699 aa13.19□□□□□ -0.3
SRP54-213ENST00000556994 PNOCQ13519 176 aa13.19□□□□□ -0.3
SRP54-213ENST00000556994 HSP90AA4PQ58FG1 418 aa13.19□□□□□ -0.3
SRP54-213ENST00000556994 FAM53CQ9NYF3 392 aa13.19□□□□□ -0.3
SRP54-213ENST00000556994 CEP126Q9P2H0 1117 aa13.19□□□□□ -0.3
SRP54-213ENST00000556994 ZNF142P52746 1687 aaPredicted RBP13.19□□□□□ -0.3
SRP54-213ENST00000556994 CAMTA1Q9Y6Y1 1673 aa13.19□□□□□ -0.3
SRP54-213ENST00000556994 PSDA5PKW4 1024 aaPredicted RBP13.18□□□□□ -0.3
SRP54-213ENST00000556994 DHX16O60231 1041 aaKnown RBP13.18□□□□□ -0.3
SRP54-213ENST00000556994 ZAP70P43403 619 aa13.18□□□□□ -0.3
SRP54-213ENST00000556994 UBASH3AP57075 661 aa13.18□□□□□ -0.3
SRP54-213ENST00000556994 CCDC93Q567U6 631 aa13.18□□□□□ -0.3
SRP54-213ENST00000556994 BRAPQ7Z569 592 aa13.18□□□□□ -0.3
SRP54-213ENST00000556994 RALYLQ86SE5 291 aaKnown RBP13.18□□□□□ -0.3
SRP54-213ENST00000556994 FAM177A1Q8N128 213 aaPredicted RBP13.18□□□□□ -0.3
SRP54-213ENST00000556994 CLIC6Q96NY7 704 aa13.18□□□□□ -0.3
SRP54-213ENST00000556994 UTP14AQ9BVJ6 771 aaKnown RBP13.18□□□□□ -0.3
SRP54-213ENST00000556994 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.18□□□□□ -0.33e-7■■■□□ 16.5
SRP54-213ENST00000556994 ERICH4A6NGS2 130 aa13.18□□□□□ -0.3
SRP54-213ENST00000556994 SERPINC1P01008 464 aa13.18□□□□□ -0.3
SRP54-213ENST00000556994 CMA1P23946 247 aa13.18□□□□□ -0.3
SRP54-213ENST00000556994 SYKP43405 635 aa13.18□□□□□ -0.3
SRP54-213ENST00000556994 ARHGAP29Q52LW3 1261 aa13.18□□□□□ -0.3
SRP54-213ENST00000556994 CCDC158Q5M9N0 1113 aa13.18□□□□□ -0.3
SRP54-213ENST00000556994 NCOA7Q8NI08 942 aa13.18□□□□□ -0.3
SRP54-213ENST00000556994 XAGE2Q96GT9 111 aa13.18□□□□□ -0.3
SRP54-213ENST00000556994 NWD2Q9ULI1 1742 aa13.17□□□□□ -0.3
SRP54-213ENST00000556994 TMEM232C9JQI7 657 aa13.17□□□□□ -0.3
SRP54-213ENST00000556994 ZNF213O14771 459 aa13.17□□□□□ -0.3
SRP54-213ENST00000556994 H2AFXP16104 143 aaPredicted RBP13.17□□□□□ -0.3
SRP54-213ENST00000556994 CLCN6P51797 869 aa13.17□□□□□ -0.3
SRP54-213ENST00000556994 SLC39A14Q15043 492 aa13.17□□□□□ -0.3
SRP54-213ENST00000556994 CFAP100Q494V2 611 aa13.17□□□□□ -0.3
SRP54-213ENST00000556994 FBXL16Q8N461 479 aa13.17□□□□□ -0.3
SRP54-213ENST00000556994 PHKBQ93100 1093 aa13.17□□□□□ -0.3
SRP54-213ENST00000556994 ZNF330Q9Y3S2 320 aaPredicted RBP13.17□□□□□ -0.3
SRP54-213ENST00000556994 FANCGO15287 622 aa13.17□□□□□ -0.3
SRP54-213ENST00000556994 NRDCO43847 1150 aa13.17□□□□□ -0.3
SRP54-213ENST00000556994 SHC4Q6S5L8 630 aa13.17□□□□□ -0.3
SRP54-213ENST00000556994 CHMP4CQ96CF2 233 aa13.17□□□□□ -0.3
SRP54-213ENST00000556994 ALG1Q9BT22 464 aa13.17□□□□□ -0.3
SRP54-213ENST00000556994 TMX1Q9H3N1 280 aa13.17□□□□□ -0.3
SRP54-213ENST00000556994 SENP2Q9HC62 589 aa13.17□□□□□ -0.3
SRP54-213ENST00000556994 ADAMTSL3P82987 1691 aa13.16□□□□□ -0.3
SRP54-213ENST00000556994 UBE2Q2LH0YL09 131 aa13.16□□□□□ -0.3
SRP54-213ENST00000556994 GPAA1O43292 621 aa13.16□□□□□ -0.3
SRP54-213ENST00000556994 ETF1P62495 437 aaKnown RBP13.16□□□□□ -0.3
SRP54-213ENST00000556994 GNL2Q13823 731 aaKnown RBP13.16□□□□□ -0.3
SRP54-213ENST00000556994 VPS37DQ86XT2 251 aa13.16□□□□□ -0.3
SRP54-213ENST00000556994 URI1O94763 535 aaPredicted RBP13.16□□□□□ -0.3
SRP54-213ENST00000556994 SPECC1Q5M775 1068 aa13.16□□□□□ -0.3
SRP54-213ENST00000556994 TRIM65Q6PJ69 517 aa13.16□□□□□ -0.3
SRP54-213ENST00000556994 EPC1Q9H2F5 836 aa13.16□□□□□ -0.3
SRP54-213ENST00000556994 FANCLQ9NW38 375 aa13.16□□□□□ -0.3
SRP54-213ENST00000556994 FHOD1Q9Y613 1164 aa13.16□□□□□ -0.3
SRP54-213ENST00000556994 IKBKBO14920 756 aa13.15□□□□□ -0.3
SRP54-213ENST00000556994 CDC27P30260 824 aa13.15□□□□□ -0.3
SRP54-213ENST00000556994 CCDC57Q2TAC2 916 aa13.15□□□□□ -0.3
SRP54-213ENST00000556994 KRT40Q6A162 431 aa13.15□□□□□ -0.3
SRP54-213ENST00000556994 CYB5R4Q7L1T6 521 aa13.15□□□□□ -0.3
SRP54-213ENST00000556994 FOXP4Q8IVH2 680 aaPredicted RBP13.15□□□□□ -0.3
SRP54-213ENST00000556994 NBPF3Q9H094 633 aa13.15□□□□□ -0.3
SRP54-213ENST00000556994 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.15□□□□□ -0.32e-9■■■□□ 17
SRP54-213ENST00000556994 FOXN1O15353 648 aa13.14□□□□□ -0.31
SRP54-213ENST00000556994 MYL5Q02045 173 aa13.14□□□□□ -0.31
SRP54-213ENST00000556994 BMS1Q14692 1282 aaKnown RBP13.14□□□□□ -0.31
SRP54-213ENST00000556994 LONRF3Q496Y0 759 aa13.14□□□□□ -0.31
SRP54-213ENST00000556994 APPBP2Q92624 585 aa13.14□□□□□ -0.31
SRP54-213ENST00000556994 MYL10Q9BUA6 226 aa13.14□□□□□ -0.31
SRP54-213ENST00000556994 INCENPQ9NQS7 918 aa13.14□□□□□ -0.31
SRP54-213ENST00000556994 TUBE1Q9UJT0 475 aa13.14□□□□□ -0.31
SRP54-213ENST00000556994 CIAO1O76071 339 aa13.14□□□□□ -0.31
SRP54-213ENST00000556994 APPP05067 770 aa13.14□□□□□ -0.31
SRP54-213ENST00000556994 METAP2P50579 478 aaKnown RBP eCLIP13.14□□□□□ -0.31
SRP54-213ENST00000556994 MICU3Q86XE3 530 aa13.14□□□□□ -0.31
SRP54-213ENST00000556994 REXO1L1PQ8IX06 675 aa13.14□□□□□ -0.31
SRP54-213ENST00000556994 STK11IPQ8N1F8 1099 aa13.14□□□□□ -0.31
SRP54-213ENST00000556994 CCDC191Q8NCU4 936 aa13.14□□□□□ -0.31
SRP54-213ENST00000556994 UBXN4Q92575 508 aa13.14□□□□□ -0.31
SRP54-213ENST00000556994 CARD6Q9BX69 1037 aa13.14□□□□□ -0.31
SRP54-213ENST00000556994 LMTK3Q96Q04 1460 aa13.14□□□□□ -0.31
SRP54-213ENST00000556994 A0A0U1RQG5 324 aaPredicted RBP13.13□□□□□ -0.31
SRP54-213ENST00000556994 SEC31AO94979 1220 aaKnown RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms