RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 TEPSINQ96N21 525 aa16.04■□□□□ 0.16
SHMT2-223ENST00000556689 C9orf78Q9NZ63 289 aaPredicted RBP16.04■□□□□ 0.16
SHMT2-223ENST00000556689 CRKP46108 304 aa16.03■□□□□ 0.16
SHMT2-223ENST00000556689 GYG1P46976 350 aa16.03■□□□□ 0.16
SHMT2-223ENST00000556689 EXOSC9Q06265 439 aaKnown RBP16.03■□□□□ 0.16
SHMT2-223ENST00000556689 TAF1CQ15572 869 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-223ENST00000556689 WDR63Q8IWG1 891 aa16.03■□□□□ 0.16
SHMT2-223ENST00000556689 CNKSR2Q8WXI2 1034 aa16.03■□□□□ 0.16
SHMT2-223ENST00000556689 ZNF333Q96JL9 665 aa16.03■□□□□ 0.16
SHMT2-223ENST00000556689 CSADQ9Y600 493 aa16.03■□□□□ 0.16
SHMT2-223ENST00000556689 CCL15-CCL14A0A0B4J2E2 113 aa16.02■□□□□ 0.16
SHMT2-223ENST00000556689 WDHD1O75717 1129 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-223ENST00000556689 VGLL4Q14135 290 aa16.02■□□□□ 0.16
SHMT2-223ENST00000556689 CCL15Q16663 113 aa16.02■□□□□ 0.16
SHMT2-223ENST00000556689 SLC9C1Q4G0N8 1177 aa16.02■□□□□ 0.16
SHMT2-223ENST00000556689 CDAN1Q8IWY9 1227 aa16.02■□□□□ 0.16
SHMT2-223ENST00000556689 TMEM39BQ9GZU3 492 aa16.02■□□□□ 0.16
SHMT2-223ENST00000556689 BRCA2P51587 3418 aa16.01■□□□□ 0.15
SHMT2-223ENST00000556689 SLC4A8Q2Y0W8 1093 aa16.01■□□□□ 0.15
SHMT2-223ENST00000556689 VPS37DQ86XT2 251 aa16.01■□□□□ 0.15
SHMT2-223ENST00000556689 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.01■□□□□ 0.158e-7■■□□□ 11.7
SHMT2-223ENST00000556689 OTUD5Q96G74 571 aa16.01■□□□□ 0.15
SHMT2-223ENST00000556689 SALL2Q9Y467 1007 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-223ENST00000556689 PTCH2Q9Y6C5 1203 aa16.01■□□□□ 0.15
SHMT2-223ENST00000556689 ALDH1L1O75891 902 aa16■□□□□ 0.15
SHMT2-223ENST00000556689 SLC4A10Q6U841 1118 aa16■□□□□ 0.15
SHMT2-223ENST00000556689 FAM43AQ8N2R8 423 aa16■□□□□ 0.15
SHMT2-223ENST00000556689 PUS3Q9BZE2 481 aaKnown RBP16■□□□□ 0.15
SHMT2-223ENST00000556689 RIPOR2Q9Y4F9 1068 aa16■□□□□ 0.15
SHMT2-223ENST00000556689 FRAT2O75474 233 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-223ENST00000556689 HDLBPQ00341 1268 aaKnown RBP15.99■□□□□ 0.15
SHMT2-223ENST00000556689 KIF22Q14807 665 aa15.99■□□□□ 0.15
SHMT2-223ENST00000556689 FBXO33Q7Z6M2 555 aa15.99■□□□□ 0.15
SHMT2-223ENST00000556689 MROH5Q6ZUA9 1318 aa15.98■□□□□ 0.15
SHMT2-223ENST00000556689 SPDYE5A6NIY4 337 aa15.98■□□□□ 0.15
SHMT2-223ENST00000556689 TLR2O60603 784 aa15.98■□□□□ 0.15
SHMT2-223ENST00000556689 CETPP11597 493 aa15.98■□□□□ 0.15
SHMT2-223ENST00000556689 CHAF1AQ13111 956 aaPredicted RBP15.98■□□□□ 0.15
SHMT2-223ENST00000556689 GRIK5Q16478 980 aa15.98■□□□□ 0.15
SHMT2-223ENST00000556689 CAVIN4Q5BKX8 364 aa15.98■□□□□ 0.15
SHMT2-223ENST00000556689 ERO1BQ86YB8 467 aa15.98■□□□□ 0.15
SHMT2-223ENST00000556689 TBC1D22AQ8WUA7 517 aa15.98■□□□□ 0.15
SHMT2-223ENST00000556689 MRIQ9BWK5 157 aa15.98■□□□□ 0.15
SHMT2-223ENST00000556689 SRCIN1Q9C0H9 1055 aa15.98■□□□□ 0.15
SHMT2-223ENST00000556689 ZCCHC17Q9NP64 241 aaKnown RBP15.98■□□□□ 0.15
SHMT2-223ENST00000556689 ECM29Q5VYK3 1845 aa15.97■□□□□ 0.15
SHMT2-223ENST00000556689 TEKT1Q969V4 418 aa15.97■□□□□ 0.15
SHMT2-223ENST00000556689 HOOK2Q96ED9 719 aa15.97■□□□□ 0.15
SHMT2-223ENST00000556689 SUCLG2Q96I99 432 aa15.97■□□□□ 0.15
SHMT2-223ENST00000556689 IQSEC3Q9UPP2 1182 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-223ENST00000556689 BTBD19C9JJ37 291 aa15.96■□□□□ 0.15
SHMT2-223ENST00000556689 MYCP01106 439 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-223ENST00000556689 GNRH1P01148 92 aa15.96■□□□□ 0.15
SHMT2-223ENST00000556689 FXR1P51114 621 aaKnown RBP eCLIP15.96■□□□□ 0.15
SHMT2-223ENST00000556689 CACNB3P54284 484 aa15.96■□□□□ 0.15
SHMT2-223ENST00000556689 LACTBP83111 547 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-223ENST00000556689 SNAPC2Q13487 334 aa15.96■□□□□ 0.15
SHMT2-223ENST00000556689 FAM83AQ86UY5 434 aa15.96■□□□□ 0.15
SHMT2-223ENST00000556689 ZKSCAN4Q969J2 545 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-223ENST00000556689 KAZALD1Q96I82 304 aa15.96■□□□□ 0.15
SHMT2-223ENST00000556689 ZDHHC15Q96MV8 337 aa15.96■□□□□ 0.15
SHMT2-223ENST00000556689 WRNIP1Q96S55 665 aa15.96■□□□□ 0.15
SHMT2-223ENST00000556689 TMOD2Q9NZR1 351 aa15.96■□□□□ 0.15
SHMT2-223ENST00000556689 COLQQ9Y215 455 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-223ENST00000556689 SNCAIPQ9Y6H5 919 aa15.96■□□□□ 0.15
SHMT2-223ENST00000556689 KIAA0100Q14667 2235 aaKnown RBP15.95■□□□□ 0.14
SHMT2-223ENST00000556689 IRF6O14896 467 aa15.95■□□□□ 0.14
SHMT2-223ENST00000556689 PRMT2P55345 433 aa15.95■□□□□ 0.14
SHMT2-223ENST00000556689 METTL24Q5JXM2 366 aa15.95■□□□□ 0.14
SHMT2-223ENST00000556689 FKBP1CQ5VVH2 108 aa15.95■□□□□ 0.14
SHMT2-223ENST00000556689 SH3TC2Q8TF17 1288 aa15.95■□□□□ 0.14
SHMT2-223ENST00000556689 ARHGAP39Q9C0H5 1083 aa15.95■□□□□ 0.14
SHMT2-223ENST00000556689 LAMB1P07942 1786 aa15.95■□□□□ 0.14
SHMT2-223ENST00000556689 PDE8BO95263 885 aa15.94■□□□□ 0.14
SHMT2-223ENST00000556689 NBPF7P0C2Y1 421 aaPredicted RBP15.94■□□□□ 0.14
SHMT2-223ENST00000556689 PPIL2Q13356 520 aa15.94■□□□□ 0.14
SHMT2-223ENST00000556689 LRRC24Q50LG9 513 aa15.94■□□□□ 0.14
SHMT2-223ENST00000556689 APOBEC3HQ6NTF7 200 aaKnown RBP15.94■□□□□ 0.14
SHMT2-223ENST00000556689 MRS2Q9HD23 443 aa15.94■□□□□ 0.14
SHMT2-223ENST00000556689 SPINK5Q9NQ38 1064 aaPredicted RBP15.94■□□□□ 0.14
SHMT2-223ENST00000556689 SUGT1Q9Y2Z0 365 aa15.94■□□□□ 0.14
SHMT2-223ENST00000556689 CACNA1FO60840 1977 aa15.93■□□□□ 0.14
SHMT2-223ENST00000556689 BCAMP50895 628 aa15.93■□□□□ 0.14
SHMT2-223ENST00000556689 DCAF15Q66K64 600 aa15.93■□□□□ 0.14
SHMT2-223ENST00000556689 BICC1Q9H694 974 aaKnown RBP15.93■□□□□ 0.14
SHMT2-223ENST00000556689 UTYO14607 1347 aa15.93■□□□□ 0.14
SHMT2-223ENST00000556689 H0YGN5 161 aa15.92■□□□□ 0.14
SHMT2-223ENST00000556689 HOXD10P28358 340 aa15.92■□□□□ 0.14
SHMT2-223ENST00000556689 PPATQ06203 517 aa15.92■□□□□ 0.14
SHMT2-223ENST00000556689 RABL6Q3YEC7 729 aaPredicted RBP15.92■□□□□ 0.14
SHMT2-223ENST00000556689 HHIPL2Q6UWX4 724 aa15.92■□□□□ 0.14
SHMT2-223ENST00000556689 C17orf99Q6UX52 265 aa15.92■□□□□ 0.14
SHMT2-223ENST00000556689 MIGA2Q7L4E1 593 aa15.92■□□□□ 0.14
SHMT2-223ENST00000556689 ZNF341Q9BYN7 854 aa15.92■□□□□ 0.14
SHMT2-223ENST00000556689 MAST3O60307 1309 aa15.92■□□□□ 0.14
SHMT2-223ENST00000556689 RBBP6Q7Z6E9 1792 aaKnown RBP15.91■□□□□ 0.14
SHMT2-223ENST00000556689 PSMC4P43686 418 aa15.91■□□□□ 0.14
SHMT2-223ENST00000556689 VGLL2Q8N8G2 317 aa15.91■□□□□ 0.14
SHMT2-223ENST00000556689 A0A1B0GUL6 1792 aa15.9■□□□□ 0.14
SHMT2-223ENST00000556689 ECM2O94769 699 aaPredicted RBP15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms