RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 PROCP04070 461 aa8.02□□□□□ -1.13
SCFD1-221ENST00000556534 CTSHP09668 335 aa8.02□□□□□ -1.13
SCFD1-221ENST00000556534 Q6ZS46 218 aa8.02□□□□□ -1.13
SCFD1-221ENST00000556534 TMEM130Q8N3G9 435 aa8.02□□□□□ -1.13
SCFD1-221ENST00000556534 KRTAP4-6Q9BYQ5 205 aa8.02□□□□□ -1.13
SCFD1-221ENST00000556534 PODXL2Q9NZ53 605 aa8.02□□□□□ -1.13
SCFD1-221ENST00000556534 GPN3Q9UHW5 284 aaPredicted RBP8.02□□□□□ -1.13
SCFD1-221ENST00000556534 RBM47A0AV96 593 aaKnown RBP8.01□□□□□ -1.13
SCFD1-221ENST00000556534 FBXO24O75426 580 aa8.01□□□□□ -1.13
SCFD1-221ENST00000556534 CTSBP07858 339 aa8.01□□□□□ -1.13
SCFD1-221ENST00000556534 NOS3P29474 1203 aa8.01□□□□□ -1.13
SCFD1-221ENST00000556534 ZNF157P51786 506 aaPredicted RBP8.01□□□□□ -1.13
SCFD1-221ENST00000556534 DUOXA2Q1HG44 320 aa8.01□□□□□ -1.13
SCFD1-221ENST00000556534 ZNF326Q5BKZ1 582 aaKnown RBP8.01□□□□□ -1.13
SCFD1-221ENST00000556534 TXNRD3Q86VQ6 643 aa8.01□□□□□ -1.13
SCFD1-221ENST00000556534 AGGF1Q8N302 714 aaeCLIP8.01□□□□□ -1.13
SCFD1-221ENST00000556534 USP26Q9BXU7 913 aa8.01□□□□□ -1.13
SCFD1-221ENST00000556534 ENC1O14682 589 aa8□□□□□ -1.13
SCFD1-221ENST00000556534 SORBS3O60504 671 aa8□□□□□ -1.13
SCFD1-221ENST00000556534 EIF4EBP3O60516 100 aaPredicted RBP8□□□□□ -1.13
SCFD1-221ENST00000556534 DLGAP3O95886 979 aa8□□□□□ -1.13
SCFD1-221ENST00000556534 MRPL58Q14197 206 aaKnown RBP8□□□□□ -1.13
SCFD1-221ENST00000556534 TPTE2Q6XPS3 522 aa8□□□□□ -1.13
SCFD1-221ENST00000556534 WFDC12Q8WWY7 111 aa8□□□□□ -1.13
SCFD1-221ENST00000556534 CRELD1Q96HD1 420 aa8□□□□□ -1.13
SCFD1-221ENST00000556534 NECAB3Q96P71 396 aaPredicted RBP8□□□□□ -1.13
SCFD1-221ENST00000556534 SPOCK3Q9BQ16 436 aa8□□□□□ -1.13
SCFD1-221ENST00000556534 AKTIPQ9H8T0 292 aa8□□□□□ -1.13
SCFD1-221ENST00000556534 TMEM39AQ9NV64 488 aa8□□□□□ -1.13
SCFD1-221ENST00000556534 TTF2Q9UNY4 1162 aaKnown RBP8□□□□□ -1.13
SCFD1-221ENST00000556534 ALX3O95076 343 aa7.99□□□□□ -1.13
SCFD1-221ENST00000556534 ECEL1O95672 775 aa7.99□□□□□ -1.13
SCFD1-221ENST00000556534 CELA3AP09093 270 aa7.99□□□□□ -1.13
SCFD1-221ENST00000556534 MAOBP27338 520 aa7.99□□□□□ -1.13
SCFD1-221ENST00000556534 IREB2P48200 963 aaKnown RBP7.99□□□□□ -1.13
SCFD1-221ENST00000556534 AP3B2Q13367 1082 aa7.99□□□□□ -1.13
SCFD1-221ENST00000556534 MEI1Q5TIA1 1274 aa7.99□□□□□ -1.13
SCFD1-221ENST00000556534 GPAT2Q6NUI2 795 aa7.99□□□□□ -1.13
SCFD1-221ENST00000556534 DDX54Q8TDD1 881 aaKnown RBP7.99□□□□□ -1.13
SCFD1-221ENST00000556534 SSBP4Q9BWG4 385 aaPredicted RBP7.99□□□□□ -1.13
SCFD1-221ENST00000556534 VTI1BQ9UEU0 232 aa7.99□□□□□ -1.13
SCFD1-221ENST00000556534 CYP11A1P05108 521 aa7.98□□□□□ -1.13
SCFD1-221ENST00000556534 GATA4P43694 442 aa7.98□□□□□ -1.13
SCFD1-221ENST00000556534 PPP2R3AQ06190 1150 aa7.98□□□□□ -1.13
SCFD1-221ENST00000556534 POU4F3Q15319 338 aa7.98□□□□□ -1.13
SCFD1-221ENST00000556534 STK35Q8TDR2 534 aa7.98□□□□□ -1.13
SCFD1-221ENST00000556534 MEGF10Q96KG7 1140 aa7.98□□□□□ -1.13
SCFD1-221ENST00000556534 CEP44Q9C0F1 390 aa7.98□□□□□ -1.13
SCFD1-221ENST00000556534 MRS2Q9HD23 443 aa7.98□□□□□ -1.13
SCFD1-221ENST00000556534 PAGE1O75459 146 aa7.97□□□□□ -1.13
SCFD1-221ENST00000556534 PDZD3Q86UT5 571 aa7.97□□□□□ -1.13
SCFD1-221ENST00000556534 SULF2Q8IWU5 870 aa7.97□□□□□ -1.13
SCFD1-221ENST00000556534 RUSC1Q9BVN2 902 aa7.97□□□□□ -1.13
SCFD1-221ENST00000556534 TMPRSS13Q9BYE2 586 aa7.97□□□□□ -1.13
SCFD1-221ENST00000556534 RNF208Q9H0X6 261 aa7.97□□□□□ -1.13
SCFD1-221ENST00000556534 MSTNO14793 375 aa7.96□□□□□ -1.14
SCFD1-221ENST00000556534 CORO1BQ9BR76 489 aa7.96□□□□□ -1.14
SCFD1-221ENST00000556534 MEGF11A6BM72 1044 aa7.95□□□□□ -1.14
SCFD1-221ENST00000556534 IGHA1P01876 353 aa7.95□□□□□ -1.14
SCFD1-221ENST00000556534 GSTP1P09211 210 aaKnown RBP7.95□□□□□ -1.14
SCFD1-221ENST00000556534 NME2P22392 152 aa7.95□□□□□ -1.14
SCFD1-221ENST00000556534 ST13P50502 369 aaKnown RBP7.95□□□□□ -1.14
SCFD1-221ENST00000556534 RASIP1Q5U651 963 aa7.95□□□□□ -1.14
SCFD1-221ENST00000556534 SV2BQ7L1I2 683 aa7.95□□□□□ -1.14
SCFD1-221ENST00000556534 DZIP1LQ8IYY4 767 aaKnown RBP7.95□□□□□ -1.14
SCFD1-221ENST00000556534 GLB1P16278 677 aa7.94□□□□□ -1.14
SCFD1-221ENST00000556534 ITGAEP38570 1179 aa7.94□□□□□ -1.14
SCFD1-221ENST00000556534 ZNF252P-AS1Q0IIN9 211 aa7.94□□□□□ -1.14
SCFD1-221ENST00000556534 CCDC86Q9H6F5 360 aaKnown RBP7.94□□□□□ -1.14
SCFD1-221ENST00000556534 SUGCTQ9HAC7 445 aa7.94□□□□□ -1.14
SCFD1-221ENST00000556534 TPSG1Q9NRR2 321 aa7.94□□□□□ -1.14
SCFD1-221ENST00000556534 USP31Q70CQ4 1352 aa7.94□□□□□ -1.14
SCFD1-221ENST00000556534 TIAF1O95411 115 aa7.93□□□□□ -1.14
SCFD1-221ENST00000556534 BMP6P22004 513 aa7.93□□□□□ -1.14
SCFD1-221ENST00000556534 ARNTP27540 789 aa7.93□□□□□ -1.14
SCFD1-221ENST00000556534 PREPP48147 710 aa7.93□□□□□ -1.14
SCFD1-221ENST00000556534 TAF1CQ15572 869 aaPredicted RBP7.93□□□□□ -1.14
SCFD1-221ENST00000556534 CCDC85BQ15834 202 aaPredicted RBP7.93□□□□□ -1.14
SCFD1-221ENST00000556534 HP1BP3Q5SSJ5 553 aaPredicted RBP7.93□□□□□ -1.14
SCFD1-221ENST00000556534 ANKRD34AQ69YU3 496 aa7.93□□□□□ -1.14
SCFD1-221ENST00000556534 SMG8Q8ND04 991 aaKnown RBP7.93□□□□□ -1.14
SCFD1-221ENST00000556534 UBL7Q96S82 380 aaPredicted RBP7.93□□□□□ -1.14
SCFD1-221ENST00000556534 CEP41Q9BYV8 373 aa7.93□□□□□ -1.14
SCFD1-221ENST00000556534 PDE3AQ14432 1141 aa7.92□□□□□ -1.14
SCFD1-221ENST00000556534 EXOSC6Q5RKV6 272 aaKnown RBP7.92□□□□□ -1.14
SCFD1-221ENST00000556534 LDLRAD1Q5T700 205 aa7.92□□□□□ -1.14
SCFD1-221ENST00000556534 PCNX4Q63HM2 1172 aa7.92□□□□□ -1.14
SCFD1-221ENST00000556534 FAM46AQ96IP4 442 aaKnown RBP7.92□□□□□ -1.14
SCFD1-221ENST00000556534 WDR18Q9BV38 432 aa7.92□□□□□ -1.14
SCFD1-221ENST00000556534 ZC3H12CQ9C0D7 883 aaKnown RBP7.92□□□□□ -1.14
SCFD1-221ENST00000556534 KRT82Q9NSB4 513 aa7.92□□□□□ -1.14
SCFD1-221ENST00000556534 CACNA2D2Q9NY47 1150 aa7.92□□□□□ -1.14
SCFD1-221ENST00000556534 UNCXA6NJT0 531 aa7.91□□□□□ -1.14
SCFD1-221ENST00000556534 ZNF862O60290 1169 aa7.91□□□□□ -1.14
SCFD1-221ENST00000556534 DOC2BQ14184 412 aa7.91□□□□□ -1.14
SCFD1-221ENST00000556534 NUTM2GQ5VZR2 741 aa7.91□□□□□ -1.14
SCFD1-221ENST00000556534 FDX2Q6P4F2 183 aa7.91□□□□□ -1.14
SCFD1-221ENST00000556534 NOC4LQ9BVI4 516 aaKnown RBP7.91□□□□□ -1.14
SCFD1-221ENST00000556534 EMILIN2Q9BXX0 1053 aa7.91□□□□□ -1.14
SCFD1-221ENST00000556534 BCL11AQ9H165 835 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms