RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 NDUFA8P51970 172 aa17.12■□□□□ 0.33
CUX1-215ENST00000556210 MEX3CQ5U5Q3 659 aaKnown RBP17.12■□□□□ 0.33
CUX1-215ENST00000556210 KCNG4Q8TDN1 519 aa17.12■□□□□ 0.33
CUX1-215ENST00000556210 UTP14AQ9BVJ6 771 aaKnown RBP17.12■□□□□ 0.33
CUX1-215ENST00000556210 DENND2AQ9ULE3 1009 aa17.12■□□□□ 0.33
CUX1-215ENST00000556210 RICTORQ6R327 1708 aa17.12■□□□□ 0.33
CUX1-215ENST00000556210 USP32Q8NFA0 1604 aa17.12■□□□□ 0.33
CUX1-215ENST00000556210 ANKARQ7Z5J8 1434 aa17.12■□□□□ 0.33
CUX1-215ENST00000556210 TOP1P11387 765 aaKnown RBP17.12■□□□□ 0.33
CUX1-215ENST00000556210 USP5P45974 858 aa17.12■□□□□ 0.33
CUX1-215ENST00000556210 CABP5Q9NP86 173 aa17.12■□□□□ 0.33
CUX1-215ENST00000556210 DIP2AQ14689 1571 aa17.12■□□□□ 0.33
CUX1-215ENST00000556210 H7C1W4 665 aa17.12■□□□□ 0.33
CUX1-215ENST00000556210 PFKFB2O60825 505 aa17.12■□□□□ 0.33
CUX1-215ENST00000556210 UBASH3AP57075 661 aa17.12■□□□□ 0.33
CUX1-215ENST00000556210 CCDC152Q4G0S7 254 aa17.12■□□□□ 0.33
CUX1-215ENST00000556210 CEP135Q66GS9 1140 aa17.12■□□□□ 0.33
CUX1-215ENST00000556210 DSCC1Q9BVC3 393 aa17.12■□□□□ 0.33
CUX1-215ENST00000556210 VIRMAQ69YN4 1812 aaKnown RBP17.11■□□□□ 0.33
CUX1-215ENST00000556210 ERVV-2B6SEH9 535 aa17.11■□□□□ 0.33
CUX1-215ENST00000556210 ZNF202O95125 648 aa17.11■□□□□ 0.33
CUX1-215ENST00000556210 ZNF827Q17R98 1081 aa17.11■□□□□ 0.33
CUX1-215ENST00000556210 KRT40Q6A162 431 aa17.11■□□□□ 0.33
CUX1-215ENST00000556210 IQCA1Q86XH1 822 aa17.11■□□□□ 0.33
CUX1-215ENST00000556210 DHX58Q96C10 678 aa17.11■□□□□ 0.33
CUX1-215ENST00000556210 MKNK2Q9HBH9 465 aa17.11■□□□□ 0.33
CUX1-215ENST00000556210 AGLP35573 1532 aa17.11■□□□□ 0.33
CUX1-215ENST00000556210 TSPY2A6NKD2 308 aa17.11■□□□□ 0.33
CUX1-215ENST00000556210 TPM1P09493 284 aa17.11■□□□□ 0.33
CUX1-215ENST00000556210 DZIP1Q86YF9 867 aaKnown RBP17.11■□□□□ 0.33
CUX1-215ENST00000556210 PXDNQ92626 1479 aa17.11■□□□□ 0.33
CUX1-215ENST00000556210 SKIDA1Q1XH10 827 aa17.11■□□□□ 0.33
CUX1-215ENST00000556210 ANO1Q5XXA6 986 aa17.11■□□□□ 0.33
CUX1-215ENST00000556210 ZNF219Q9P2Y4 722 aaPredicted RBP17.11■□□□□ 0.33
CUX1-215ENST00000556210 HEG1Q9ULI3 1381 aa17.1■□□□□ 0.33
CUX1-215ENST00000556210 SH3TC1Q8TE82 1336 aa17.1■□□□□ 0.33
CUX1-215ENST00000556210 EPB41L2O43491 1005 aaKnown RBP17.1■□□□□ 0.33
CUX1-215ENST00000556210 ZPR1O75312 459 aa17.1■□□□□ 0.33
CUX1-215ENST00000556210 UQCRFS1P1P0C7P4 283 aa17.1■□□□□ 0.33
CUX1-215ENST00000556210 PDE6AP16499 860 aa17.1■□□□□ 0.33
CUX1-215ENST00000556210 CTSWP56202 376 aa17.1■□□□□ 0.33
CUX1-215ENST00000556210 GTPBP4Q9BZE4 634 aaKnown RBP17.1■□□□□ 0.33
CUX1-215ENST00000556210 KIF20BQ96Q89 1820 aa17.1■□□□□ 0.33
CUX1-215ENST00000556210 SMTNL1A8MU46 457 aa17.1■□□□□ 0.33
CUX1-215ENST00000556210 NLRP5P59047 1200 aa17.1■□□□□ 0.33
CUX1-215ENST00000556210 FOXO4P98177 505 aa17.1■□□□□ 0.33
CUX1-215ENST00000556210 TSR1Q2NL82 804 aaKnown RBP17.1■□□□□ 0.33
CUX1-215ENST00000556210 ATG9AQ7Z3C6 839 aa17.1■□□□□ 0.33
CUX1-215ENST00000556210 ZBTB38Q8NAP3 1195 aaPredicted RBP17.1■□□□□ 0.33
CUX1-215ENST00000556210 C8orf37Q96NL8 207 aa17.1■□□□□ 0.33
CUX1-215ENST00000556210 RIMS1Q86UR5 1692 aaKnown RBP17.1■□□□□ 0.33
CUX1-215ENST00000556210 WDR17Q8IZU2 1322 aa17.09■□□□□ 0.33
CUX1-215ENST00000556210 ADGRL3Q9HAR2 1447 aa17.09■□□□□ 0.33
CUX1-215ENST00000556210 GOLGA8FQ08AF8 430 aa17.09■□□□□ 0.33
CUX1-215ENST00000556210 GOLGA8DPQ0D2H9 430 aa17.09■□□□□ 0.33
CUX1-215ENST00000556210 MYSM1Q5VVJ2 828 aa17.09■□□□□ 0.33
CUX1-215ENST00000556210 ANKRD18AQ8IVF6 992 aa17.09■□□□□ 0.33
CUX1-215ENST00000556210 MAPK8IP1Q9UQF2 711 aa17.09■□□□□ 0.33
CUX1-215ENST00000556210 PDE8AO60658 829 aa17.09■□□□□ 0.33
CUX1-215ENST00000556210 COBLO75128 1261 aa17.09■□□□□ 0.33
CUX1-215ENST00000556210 TNNT3P45378 269 aaPredicted RBP17.09■□□□□ 0.33
CUX1-215ENST00000556210 NBPF5PQ86XG9 351 aaPredicted RBP17.09■□□□□ 0.33
CUX1-215ENST00000556210 TRMT44Q8IYL2 757 aaKnown RBP17.09■□□□□ 0.33
CUX1-215ENST00000556210 CTCFLQ8NI51 663 aaPredicted RBP17.09■□□□□ 0.33
CUX1-215ENST00000556210 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.09■□□□□ 0.335e-7■■□□□ 11.9
CUX1-215ENST00000556210 MCAMP43121 646 aa17.09■□□□□ 0.33
CUX1-215ENST00000556210 MAPK8IP2Q13387 824 aaPredicted RBP17.09■□□□□ 0.33
CUX1-215ENST00000556210 SPATA5Q8NB90 893 aa17.09■□□□□ 0.33
CUX1-215ENST00000556210 KIF18AQ8NI77 898 aa17.09■□□□□ 0.33
CUX1-215ENST00000556210 CCDC66A2RUB6 948 aa17.08■□□□□ 0.33
CUX1-215ENST00000556210 BTBD18B2RXH4 712 aa17.08■□□□□ 0.33
CUX1-215ENST00000556210 PNOCQ13519 176 aa17.08■□□□□ 0.33
CUX1-215ENST00000556210 NAA16Q6N069 864 aaPredicted RBP17.08■□□□□ 0.33
CUX1-215ENST00000556210 F8W031 263 aaPredicted RBP17.08■□□□□ 0.32
CUX1-215ENST00000556210 CLSTN1O94985 981 aa17.08■□□□□ 0.32
CUX1-215ENST00000556210 GPIHBP1Q8IV16 184 aa17.08■□□□□ 0.32
CUX1-215ENST00000556210 DIS3L2Q8IYB7 885 aaKnown RBP17.08■□□□□ 0.32
CUX1-215ENST00000556210 UIMC1Q96RL1 719 aa17.08■□□□□ 0.32
CUX1-215ENST00000556210 CYP2D7A0A087X1C5 515 aa17.08■□□□□ 0.32
CUX1-215ENST00000556210 RESTQ13127 1097 aa17.08■□□□□ 0.32
CUX1-215ENST00000556210 IFIT1BQ5T764 474 aaKnown RBP17.08■□□□□ 0.32
CUX1-215ENST00000556210 CATIPQ7Z7H3 387 aa17.08■□□□□ 0.32
CUX1-215ENST00000556210 CDC5LQ99459 802 aaKnown RBP17.08■□□□□ 0.32
CUX1-215ENST00000556210 PIH1D3Q9NQM4 214 aaKnown RBP17.08■□□□□ 0.32
CUX1-215ENST00000556210 DNAI1Q9UI46 699 aa17.08■□□□□ 0.32
CUX1-215ENST00000556210 ZNF652Q9Y2D9 606 aa17.08■□□□□ 0.32
CUX1-215ENST00000556210 ST3GAL1Q11201 340 aa17.07■□□□□ 0.32
CUX1-215ENST00000556210 PUM3Q15397 648 aaKnown RBP17.07■□□□□ 0.32
CUX1-215ENST00000556210 SSBP05455 408 aaKnown RBP eCLIP17.07■□□□□ 0.32
CUX1-215ENST00000556210 SNW1Q13573 536 aaKnown RBP17.07■□□□□ 0.32
CUX1-215ENST00000556210 GIGYF2Q6Y7W6 1299 aaKnown RBP17.07■□□□□ 0.32
CUX1-215ENST00000556210 PPFIBP1Q86W92 1011 aa17.07■□□□□ 0.32
CUX1-215ENST00000556210 KIAA1524Q8TCG1 905 aa17.07■□□□□ 0.32
CUX1-215ENST00000556210 PAXBP1Q9Y5B6 917 aa17.07■□□□□ 0.32
CUX1-215ENST00000556210 V9GY48 417 aaPredicted RBP17.07■□□□□ 0.32
CUX1-215ENST00000556210 ZNF174Q15697 407 aa17.07■□□□□ 0.32
CUX1-215ENST00000556210 DPCR1Q3MIW9 517 aa17.07■□□□□ 0.32
CUX1-215ENST00000556210 NLRP10Q86W26 655 aa17.07■□□□□ 0.32
CUX1-215ENST00000556210 ANKRD20A12PQ8NF67 263 aa17.07■□□□□ 0.32
CUX1-215ENST00000556210 LLPHQ9BRT6 129 aaKnown RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms