RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 CNTNAP1P78357 1384 aa17.65■□□□□ 0.42
CCDC88C-207ENST00000554051 TRAF5O00463 557 aa17.64■□□□□ 0.41
CCDC88C-207ENST00000554051 CELF2O95319 508 aaKnown RBP17.64■□□□□ 0.41
CCDC88C-207ENST00000554051 TTC39AQ5SRH9 613 aa17.64■□□□□ 0.41
CCDC88C-207ENST00000554051 HHIPL2Q6UWX4 724 aa17.64■□□□□ 0.41
CCDC88C-207ENST00000554051 RHPN1Q8TCX5 695 aa17.64■□□□□ 0.41
CCDC88C-207ENST00000554051 KLRG1Q96E93 195 aa17.64■□□□□ 0.41
CCDC88C-207ENST00000554051 HHIPL1Q96JK4 782 aa17.64■□□□□ 0.41
CCDC88C-207ENST00000554051 ZDHHC15Q96MV8 337 aa17.64■□□□□ 0.41
CCDC88C-207ENST00000554051 TMOD2Q9NZR1 351 aa17.64■□□□□ 0.41
CCDC88C-207ENST00000554051 RASSF10A6NK89 507 aa17.63■□□□□ 0.41
CCDC88C-207ENST00000554051 ADM5C9JUS6 153 aa17.63■□□□□ 0.41
CCDC88C-207ENST00000554051 SPATA5Q8NB90 893 aa17.63■□□□□ 0.41
CCDC88C-207ENST00000554051 CDCA5Q96FF9 252 aa17.63■□□□□ 0.41
CCDC88C-207ENST00000554051 THSD7BQ9C0I4 1608 aa17.62■□□□□ 0.41
CCDC88C-207ENST00000554051 TNNI2P48788 182 aa17.62■□□□□ 0.41
CCDC88C-207ENST00000554051 SPDYE2Q495Y8 402 aa17.62■□□□□ 0.41
CCDC88C-207ENST00000554051 TMED8Q6PL24 325 aaPredicted RBP17.62■□□□□ 0.41
CCDC88C-207ENST00000554051 DZIP1Q86YF9 867 aaKnown RBP17.62■□□□□ 0.41
CCDC88C-207ENST00000554051 SIRT2Q8IXJ6 389 aa17.62■□□□□ 0.41
CCDC88C-207ENST00000554051 DBNDD2Q9BQY9 259 aa17.62■□□□□ 0.41
CCDC88C-207ENST00000554051 ZNF408Q9H9D4 720 aa17.62■□□□□ 0.41
CCDC88C-207ENST00000554051 TLL2Q9Y6L7 1015 aa17.62■□□□□ 0.41
CCDC88C-207ENST00000554051 ECE1P42892 770 aa17.61■□□□□ 0.41
CCDC88C-207ENST00000554051 GSTO1P78417 241 aa17.61■□□□□ 0.41
CCDC88C-207ENST00000554051 AACSQ86V21 672 aa17.61■□□□□ 0.41
CCDC88C-207ENST00000554051 C2orf69Q8N8R5 385 aa17.61■□□□□ 0.41
CCDC88C-207ENST00000554051 GBA2Q9HCG7 927 aaPredicted RBP17.61■□□□□ 0.41
CCDC88C-207ENST00000554051 DBNLQ9UJU6 430 aaKnown RBP17.61■□□□□ 0.41
CCDC88C-207ENST00000554051 ASTN2O75129 1339 aaPredicted RBP17.61■□□□□ 0.41
CCDC88C-207ENST00000554051 IFIT2P09913 472 aaKnown RBP17.6■□□□□ 0.41
CCDC88C-207ENST00000554051 FKBP1CQ5VVH2 108 aa17.6■□□□□ 0.41
CCDC88C-207ENST00000554051 CST9Q5W186 159 aa17.6■□□□□ 0.41
CCDC88C-207ENST00000554051 ERICH6Q7L0X2 663 aa17.6■□□□□ 0.41
CCDC88C-207ENST00000554051 EAF2Q96CJ1 260 aaPredicted RBP17.6■□□□□ 0.41
CCDC88C-207ENST00000554051 PRMT6Q96LA8 375 aaPredicted RBP17.6■□□□□ 0.41
CCDC88C-207ENST00000554051 LRRCC1Q9C099 1032 aa17.6■□□□□ 0.41
CCDC88C-207ENST00000554051 HMG20BQ9P0W2 317 aa17.6■□□□□ 0.41
CCDC88C-207ENST00000554051 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.6■□□□□ 0.41
CCDC88C-207ENST00000554051 RPAP1Q9BWH6 1393 aaPredicted RBP17.6■□□□□ 0.41
CCDC88C-207ENST00000554051 POLR2AP24928 1970 aaKnown RBP17.6■□□□□ 0.41
CCDC88C-207ENST00000554051 PRDX5P30044 214 aa17.59■□□□□ 0.41
CCDC88C-207ENST00000554051 SAPCD2Q86UD0 394 aa17.59■□□□□ 0.41
CCDC88C-207ENST00000554051 DNAJC5GQ8N7S2 189 aa17.59■□□□□ 0.41
CCDC88C-207ENST00000554051 JMYQ8N9B5 988 aa17.59■□□□□ 0.41
CCDC88C-207ENST00000554051 CRBNQ96SW2 442 aa17.59■□□□□ 0.41
CCDC88C-207ENST00000554051 VEZTQ9HBM0 779 aa17.59■□□□□ 0.41
CCDC88C-207ENST00000554051 ABCF2Q9UG63 623 aa17.59■□□□□ 0.41
CCDC88C-207ENST00000554051 GAKO14976 1311 aa17.58■□□□□ 0.4
CCDC88C-207ENST00000554051 MAP4K4O95819 1239 aaPredicted RBP17.58■□□□□ 0.4
CCDC88C-207ENST00000554051 MCAMP43121 646 aa17.58■□□□□ 0.4
CCDC88C-207ENST00000554051 HTRA3P83110 453 aa17.58■□□□□ 0.4
CCDC88C-207ENST00000554051 DEFB115Q30KQ5 88 aa17.58■□□□□ 0.4
CCDC88C-207ENST00000554051 SUPT20HL1Q3ZLR7 823 aa17.58■□□□□ 0.4
CCDC88C-207ENST00000554051 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.58■□□□□ 0.4
CCDC88C-207ENST00000554051 HOOK2Q96ED9 719 aa17.58■□□□□ 0.4
CCDC88C-207ENST00000554051 DEFB129Q9H1M3 183 aa17.58■□□□□ 0.4
CCDC88C-207ENST00000554051 ZNF70Q9UC06 446 aaPredicted RBP17.58■□□□□ 0.4
CCDC88C-207ENST00000554051 CLRN2A0PK11 232 aa17.57■□□□□ 0.4
CCDC88C-207ENST00000554051 LDHCP07864 332 aa17.57■□□□□ 0.4
CCDC88C-207ENST00000554051 DCTPP1Q9H773 170 aa17.57■□□□□ 0.4
CCDC88C-207ENST00000554051 MKRN1Q9UHC7 482 aaKnown RBP17.57■□□□□ 0.4
CCDC88C-207ENST00000554051 DAGLAQ9Y4D2 1042 aa17.57■□□□□ 0.4
CCDC88C-207ENST00000554051 AKAP11Q9UKA4 1901 aa17.57■□□□□ 0.4
CCDC88C-207ENST00000554051 MROH7-TTC4A0A0A0MT08 1334 aa17.56■□□□□ 0.4
CCDC88C-207ENST00000554051 UNCXA6NJT0 531 aa17.56■□□□□ 0.4
CCDC88C-207ENST00000554051 HUNKP57058 714 aa17.56■□□□□ 0.4
CCDC88C-207ENST00000554051 GRIK5Q16478 980 aa17.56■□□□□ 0.4
CCDC88C-207ENST00000554051 FAM83AQ86UY5 434 aa17.56■□□□□ 0.4
CCDC88C-207ENST00000554051 FAM163AQ96GL9 167 aaPredicted RBP17.56■□□□□ 0.4
CCDC88C-207ENST00000554051 CCDC8Q9H0W5 538 aaPredicted RBP17.56■□□□□ 0.4
CCDC88C-207ENST00000554051 IL1RAPL2Q9NP60 686 aa17.56■□□□□ 0.4
CCDC88C-207ENST00000554051 LRP2BPQ9P2M1 347 aa17.56■□□□□ 0.4
CCDC88C-207ENST00000554051 MYH2Q9UKX2 1941 aa17.56■□□□□ 0.4
CCDC88C-207ENST00000554051 APBB1O00213 710 aa17.55■□□□□ 0.4
CCDC88C-207ENST00000554051 FMR1Q06787 632 aaKnown RBP eCLIP17.55■□□□□ 0.4
CCDC88C-207ENST00000554051 TTF1Q15361 905 aaPredicted RBP17.55■□□□□ 0.4
CCDC88C-207ENST00000554051 APOBEC3HQ6NTF7 200 aaKnown RBP17.55■□□□□ 0.4
CCDC88C-207ENST00000554051 PAXIP1Q6ZW49 1069 aaPredicted RBP17.55■□□□□ 0.4
CCDC88C-207ENST00000554051 ARMC9Q7Z3E5 817 aa17.55■□□□□ 0.4
CCDC88C-207ENST00000554051 CERS3Q8IU89 383 aa17.55■□□□□ 0.4
CCDC88C-207ENST00000554051 GPATCH3Q96I76 525 aa17.55■□□□□ 0.4
CCDC88C-207ENST00000554051 NOL10Q9BSC4 688 aaKnown RBP17.55■□□□□ 0.4
CCDC88C-207ENST00000554051 TDRD3Q9H7E2 651 aaKnown RBP17.55■□□□□ 0.4
CCDC88C-207ENST00000554051 TLR7Q9NYK1 1049 aaKnown RBP17.55■□□□□ 0.4
CCDC88C-207ENST00000554051 DOCK2Q92608 1830 aa17.55■□□□□ 0.4
CCDC88C-207ENST00000554051 PPP1R12BO60237 982 aaPredicted RBP17.54■□□□□ 0.4
CCDC88C-207ENST00000554051 HDAC1Q13547 482 aaPredicted RBP17.54■□□□□ 0.4
CCDC88C-207ENST00000554051 RASA3Q14644 834 aa17.54■□□□□ 0.4
CCDC88C-207ENST00000554051 DIXDC1Q155Q3 683 aa17.54■□□□□ 0.4
CCDC88C-207ENST00000554051 RAI14Q9P0K7 980 aa17.54■□□□□ 0.4
CCDC88C-207ENST00000554051 ZBTB47Q9UFB7 747 aaPredicted RBP17.54■□□□□ 0.4
CCDC88C-207ENST00000554051 PCDHAC2Q9Y5I4 1007 aa17.54■□□□□ 0.4
CCDC88C-207ENST00000554051 MECOMQ03112 1051 aa17.53■□□□□ 0.4
CCDC88C-207ENST00000554051 TTLL12Q14166 644 aaPredicted RBP17.53■□□□□ 0.4
CCDC88C-207ENST00000554051 RGMBQ6NW40 437 aa17.53■□□□□ 0.4
CCDC88C-207ENST00000554051 PI16Q6UXB8 463 aa17.53■□□□□ 0.4
CCDC88C-207ENST00000554051 CCDC102AQ96A19 550 aa17.53■□□□□ 0.4
CCDC88C-207ENST00000554051 GCC1Q96CN9 775 aa17.53■□□□□ 0.4
CCDC88C-207ENST00000554051 CAPNS2Q96L46 248 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms