RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 ECM29Q5VYK3 1845 aa17.47■□□□□ 0.39
SHMT2-210ENST00000553950 LDHCP07864 332 aa17.47■□□□□ 0.39
SHMT2-210ENST00000553950 PDE6AP16499 860 aa17.47■□□□□ 0.39
SHMT2-210ENST00000553950 C8orf34Q49A92 452 aa17.47■□□□□ 0.39
SHMT2-210ENST00000553950 NAA16Q6N069 864 aaPredicted RBP17.47■□□□□ 0.39
SHMT2-210ENST00000553950 EPB41L2O43491 1005 aaKnown RBP17.46■□□□□ 0.39
SHMT2-210ENST00000553950 ZMYM1Q5SVZ6 1142 aa17.46■□□□□ 0.39
SHMT2-210ENST00000553950 DACT2Q5SW24 774 aa17.46■□□□□ 0.39
SHMT2-210ENST00000553950 CIAPIN1Q6FI81 312 aa17.46■□□□□ 0.39
SHMT2-210ENST00000553950 NOL10Q9BSC4 688 aaKnown RBP17.46■□□□□ 0.39
SHMT2-210ENST00000553950 FOCADQ5VW36 1801 aa17.46■□□□□ 0.39
SHMT2-210ENST00000553950 YDJCA8MPS7 323 aa17.45■□□□□ 0.38
SHMT2-210ENST00000553950 RPS12P25398 132 aaKnown RBP17.45■□□□□ 0.38
SHMT2-210ENST00000553950 PRDX5P30044 214 aa17.45■□□□□ 0.38
SHMT2-210ENST00000553950 MCMDC2Q4G0Z9 681 aa17.45■□□□□ 0.38
SHMT2-210ENST00000553950 RSBN1LQ6PCB5 846 aaPredicted RBP17.45■□□□□ 0.38
SHMT2-210ENST00000553950 MAGEB6Q8N7X4 407 aa17.45■□□□□ 0.38
SHMT2-210ENST00000553950 ESYT1Q9BSJ8 1104 aa17.45■□□□□ 0.38
SHMT2-210ENST00000553950 ZNF532Q9HCE3 1301 aa17.45■□□□□ 0.38
SHMT2-210ENST00000553950 LAMA4Q16363 1823 aa17.44■□□□□ 0.38
SHMT2-210ENST00000553950 NAV1Q8NEY1 1877 aa17.44■□□□□ 0.38
SHMT2-210ENST00000553950 FZD9O00144 591 aa17.44■□□□□ 0.38
SHMT2-210ENST00000553950 HDLBPQ00341 1268 aaKnown RBP17.44■□□□□ 0.38
SHMT2-210ENST00000553950 MECOMQ03112 1051 aa17.44■□□□□ 0.38
SHMT2-210ENST00000553950 NMIQ13287 307 aaPredicted RBP17.44■□□□□ 0.38
SHMT2-210ENST00000553950 CWC27Q6UX04 472 aaKnown RBP17.44■□□□□ 0.38
SHMT2-210ENST00000553950 KIAA1211Q6ZU35 1233 aa17.44■□□□□ 0.38
SHMT2-210ENST00000553950 AGBL3Q8NEM8 1001 aa17.44■□□□□ 0.38
SHMT2-210ENST00000553950 NSUN4Q96CB9 384 aaKnown RBP17.44■□□□□ 0.38
SHMT2-210ENST00000553950 HDAC9Q9UKV0 1011 aa17.44■□□□□ 0.38
SHMT2-210ENST00000553950 JAG2Q9Y219 1238 aa17.44■□□□□ 0.38
SHMT2-210ENST00000553950 CCDC171Q6TFL3 1326 aa17.44■□□□□ 0.38
SHMT2-210ENST00000553950 CDK5RAP2Q96SN8 1893 aa17.44■□□□□ 0.38
SHMT2-210ENST00000553950 SGSM2O43147 1006 aa17.43■□□□□ 0.38
SHMT2-210ENST00000553950 VIL1P09327 827 aaKnown RBP17.43■□□□□ 0.38
SHMT2-210ENST00000553950 CYP7A1P22680 504 aa17.43■□□□□ 0.38
SHMT2-210ENST00000553950 AIDAQ96BJ3 306 aa17.43■□□□□ 0.38
SHMT2-210ENST00000553950 BACH2Q9BYV9 841 aa17.43■□□□□ 0.38
SHMT2-210ENST00000553950 RNF181Q9P0P0 153 aa17.43■□□□□ 0.38
SHMT2-210ENST00000553950 MROH7-TTC4A0A0A0MT08 1334 aa17.43■□□□□ 0.38
SHMT2-210ENST00000553950 LAMB1P07942 1786 aa17.43■□□□□ 0.38
SHMT2-210ENST00000553950 RPAP1Q9BWH6 1393 aaPredicted RBP17.42■□□□□ 0.38
SHMT2-210ENST00000553950 A0A0D9SFI3 127 aa17.42■□□□□ 0.38
SHMT2-210ENST00000553950 TCRBV5S4A2TA0A5A2 114 aa17.42■□□□□ 0.38
SHMT2-210ENST00000553950 PSMD14O00487 310 aa17.42■□□□□ 0.38
SHMT2-210ENST00000553950 BAG3O95817 575 aa17.42■□□□□ 0.38
SHMT2-210ENST00000553950 PLCG2P16885 1265 aa17.42■□□□□ 0.38
SHMT2-210ENST00000553950 GNAT2P19087 354 aa17.42■□□□□ 0.38
SHMT2-210ENST00000553950 OGFOD1Q8N543 542 aa17.42■□□□□ 0.38
SHMT2-210ENST00000553950 TEKT1Q969V4 418 aa17.42■□□□□ 0.38
SHMT2-210ENST00000553950 MRIQ9BWK5 157 aa17.42■□□□□ 0.38
SHMT2-210ENST00000553950 TTF2Q9UNY4 1162 aaKnown RBP17.42■□□□□ 0.38
SHMT2-210ENST00000553950 GAKO14976 1311 aa17.42■□□□□ 0.38
SHMT2-210ENST00000553950 ADAMTSL1Q8N6G6 1762 aa17.41■□□□□ 0.38
SHMT2-210ENST00000553950 RAD17O75943 681 aa17.41■□□□□ 0.38
SHMT2-210ENST00000553950 FAM163AQ96GL9 167 aaPredicted RBP17.41■□□□□ 0.38
SHMT2-210ENST00000553950 FAM227BQ96M60 508 aa17.41■□□□□ 0.38
SHMT2-210ENST00000553950 SERPINA10Q9UK55 444 aa17.41■□□□□ 0.38
SHMT2-210ENST00000553950 MAGEB6P1A0A0J9YX57 407 aa17.4■□□□□ 0.38
SHMT2-210ENST00000553950 MCCP23508 829 aa17.4■□□□□ 0.38
SHMT2-210ENST00000553950 CXCL9Q07325 125 aa17.4■□□□□ 0.38
SHMT2-210ENST00000553950 HHIPL2Q6UWX4 724 aa17.4■□□□□ 0.38
SHMT2-210ENST00000553950 CERS5Q8N5B7 392 aa17.4■□□□□ 0.38
SHMT2-210ENST00000553950 GOLGB1Q14789 3259 aaKnown RBP17.39■□□□□ 0.38
SHMT2-210ENST00000553950 GPAA1O43292 621 aa17.39■□□□□ 0.37
SHMT2-210ENST00000553950 KIAA0825Q8IV33 1275 aa17.39■□□□□ 0.37
SHMT2-210ENST00000553950 GPC2Q8N158 579 aa17.39■□□□□ 0.37
SHMT2-210ENST00000553950 OSBP2Q969R2 916 aa17.39■□□□□ 0.37
SHMT2-210ENST00000553950 DDRGK1Q96HY6 314 aa17.39■□□□□ 0.37
SHMT2-210ENST00000553950 ANO2Q9NQ90 1003 aa17.39■□□□□ 0.37
SHMT2-210ENST00000553950 DDX60LQ5H9U9 1706 aaKnown RBP17.38■□□□□ 0.37
SHMT2-210ENST00000553950 SCN4AP35499 1836 aa17.38■□□□□ 0.37
SHMT2-210ENST00000553950 MBD4O95243 580 aa17.38■□□□□ 0.37
SHMT2-210ENST00000553950 PRELPP51888 382 aa17.38■□□□□ 0.37
SHMT2-210ENST00000553950 C9orf131Q5VYM1 1079 aa17.38■□□□□ 0.37
SHMT2-210ENST00000553950 DPF2Q92785 391 aa17.38■□□□□ 0.37
SHMT2-210ENST00000553950 DSCC1Q9BVC3 393 aa17.38■□□□□ 0.37
SHMT2-210ENST00000553950 CRNKL1Q9BZJ0 848 aaKnown RBP17.38■□□□□ 0.37
SHMT2-210ENST00000553950 ZMYM6O95789 1325 aa17.38■□□□□ 0.37
SHMT2-210ENST00000553950 M0R2C6 588 aa17.37■□□□□ 0.37
SHMT2-210ENST00000553950 USP17L8P0C7I0 530 aa17.37■□□□□ 0.37
SHMT2-210ENST00000553950 ZDHHC15Q96MV8 337 aa17.37■□□□□ 0.37
SHMT2-210ENST00000553950 GMLQ99445 158 aa17.37■□□□□ 0.37
SHMT2-210ENST00000553950 NACAP1Q9BZK3 213 aa17.37■□□□□ 0.37
SHMT2-210ENST00000553950 PUS7LQ9H0K6 701 aaKnown RBP17.37■□□□□ 0.37
SHMT2-210ENST00000553950 KCNQ5Q9NR82 932 aa17.37■□□□□ 0.37
SHMT2-210ENST00000553950 ZNF541Q9H0D2 1346 aa17.37■□□□□ 0.37
SHMT2-210ENST00000553950 MYH1P12882 1939 aa17.37■□□□□ 0.37
SHMT2-210ENST00000553950 GPR75-ASB3A0A0A6YYF3 556 aa17.36■□□□□ 0.37
SHMT2-210ENST00000553950 F8W031 263 aaPredicted RBP17.36■□□□□ 0.37
SHMT2-210ENST00000553950 BTDP43251 543 aa17.36■□□□□ 0.37
SHMT2-210ENST00000553950 CRKP46108 304 aa17.36■□□□□ 0.37
SHMT2-210ENST00000553950 PPP4CP60510 307 aa17.36■□□□□ 0.37
SHMT2-210ENST00000553950 DIXDC1Q155Q3 683 aa17.36■□□□□ 0.37
SHMT2-210ENST00000553950 DPY19L2Q6NUT2 758 aa17.36■□□□□ 0.37
SHMT2-210ENST00000553950 ZNF384Q8TF68 577 aa17.36■□□□□ 0.37
SHMT2-210ENST00000553950 DAGLAQ9Y4D2 1042 aa17.36■□□□□ 0.37
SHMT2-210ENST00000553950 U3KPZ7 1027 aaPredicted RBP17.36■□□□□ 0.37
SHMT2-210ENST00000553950 BAZ2AQ9UIF9 1905 aaKnown RBP17.36■□□□□ 0.37
SHMT2-210ENST00000553950 RNF20Q5VTR2 975 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms