RNA–Protein interactions for RNA: ENST00000553498.5

ATXN3-221, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 911 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-221ENST00000553498 SCUBE3Q8IX30 993 aa8.76□□□□□ -1.01
ATXN3-221ENST00000553498 JARID2Q92833 1246 aaPredicted RBP8.76□□□□□ -1.01
ATXN3-221ENST00000553498 ACSBG1Q96GR2 724 aa8.76□□□□□ -1.01
ATXN3-221ENST00000553498 NEUROD6Q96NK8 337 aa8.76□□□□□ -1.01
ATXN3-221ENST00000553498 PAG1Q9NWQ8 432 aa8.76□□□□□ -1.01
ATXN3-221ENST00000553498 TBC1D2BQ9UPU7 963 aa8.76□□□□□ -1.01
ATXN3-221ENST00000553498 RIPOR2Q9Y4F9 1068 aa8.76□□□□□ -1.01
ATXN3-221ENST00000553498 SNX14Q9Y5W7 946 aa8.76□□□□□ -1.01
ATXN3-221ENST00000553498 RREB1Q92766 1687 aa8.75□□□□□ -1.01
ATXN3-221ENST00000553498 ATRNO75882 1429 aa8.75□□□□□ -1.01
ATXN3-221ENST00000553498 GOLGA6L22H0YM25 854 aa8.75□□□□□ -1.01
ATXN3-221ENST00000553498 TLL1O43897 1013 aa8.75□□□□□ -1.01
ATXN3-221ENST00000553498 RGS20O76081 388 aa8.75□□□□□ -1.01
ATXN3-221ENST00000553498 CD2BP2O95400 341 aaKnown RBP8.75□□□□□ -1.01
ATXN3-221ENST00000553498 IFIT1P09914 478 aaKnown RBP8.75□□□□□ -1.01
ATXN3-221ENST00000553498 UQCRFS1P1P0C7P4 283 aa8.75□□□□□ -1.01
ATXN3-221ENST00000553498 GPTP24298 496 aa8.75□□□□□ -1.01
ATXN3-221ENST00000553498 SSFA2P28290 1259 aa8.75□□□□□ -1.01
ATXN3-221ENST00000553498 NMIQ13287 307 aaPredicted RBP8.75□□□□□ -1.01
ATXN3-221ENST00000553498 TTF1Q15361 905 aaPredicted RBP8.75□□□□□ -1.01
ATXN3-221ENST00000553498 MCMDC2Q4G0Z9 681 aa8.75□□□□□ -1.01
ATXN3-221ENST00000553498 LRRC24Q50LG9 513 aa8.75□□□□□ -1.01
ATXN3-221ENST00000553498 GORABQ5T7V8 394 aa8.75□□□□□ -1.01
ATXN3-221ENST00000553498 VPS53Q5VIR6 699 aa8.75□□□□□ -1.01
ATXN3-221ENST00000553498 ZSCAN25Q6NSZ9 544 aa8.75□□□□□ -1.01
ATXN3-221ENST00000553498 PPP1R18Q6NYC8 613 aa8.75□□□□□ -1.01
ATXN3-221ENST00000553498 ZSCAN31Q96LW9 406 aaPredicted RBP8.75□□□□□ -1.01
ATXN3-221ENST00000553498 NYXQ9GZU5 481 aa8.75□□□□□ -1.01
ATXN3-221ENST00000553498 CYP46A1Q9Y6A2 500 aa8.75□□□□□ -1.01
ATXN3-221ENST00000553498 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.75□□□□□ -1.01
ATXN3-221ENST00000553498 UBN2Q6ZU65 1347 aa8.75□□□□□ -1.01
ATXN3-221ENST00000553498 TJP1Q07157 1748 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.74□□□□□ -1.01
ATXN3-221ENST00000553498 IGSF3O75054 1194 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 FRAT2O75474 233 aaPredicted RBP8.74□□□□□ -1.01
ATXN3-221ENST00000553498 RPS6KA4O75676 772 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 PDE8BO95263 885 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 NTSR2O95665 410 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 HMGB1P09429 215 aaKnown RBP8.74□□□□□ -1.01
ATXN3-221ENST00000553498 SSTR3P32745 418 aaPredicted RBP8.74□□□□□ -1.01
ATXN3-221ENST00000553498 MCM4P33991 863 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 KCNJ4P48050 445 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 ATP2B3Q16720 1220 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 SKOR2Q2VWA4 1001 aaPredicted RBP8.74□□□□□ -1.01
ATXN3-221ENST00000553498 METTL24Q5JXM2 366 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 SLC10A5Q5PT55 438 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 TTC39AQ5SRH9 613 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 SUSD4Q5VX71 490 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 LPIN2Q92539 896 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 CHMP4CQ96CF2 233 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 THAP11Q96EK4 314 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 XAGE2Q96GT9 111 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 TMX3Q96JJ7 454 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 CDC5LQ99459 802 aaKnown RBP8.74□□□□□ -1.01
ATXN3-221ENST00000553498 DNAJC2Q99543 621 aaKnown RBP8.74□□□□□ -1.01
ATXN3-221ENST00000553498 DSCC1Q9BVC3 393 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.74□□□□□ -1.01
ATXN3-221ENST00000553498 GREM2Q9H772 168 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 SH2B1Q9NRF2 756 aaPredicted RBP8.74□□□□□ -1.01
ATXN3-221ENST00000553498 CNNM1Q9NRU3 951 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 PALD1Q9ULE6 856 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 LIMCH1Q9UPQ0 1083 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 DOT1LQ8TEK3 1739 aa8.74□□□□□ -1.01
ATXN3-221ENST00000553498 THSD7AQ9UPZ6 1657 aa8.73□□□□□ -1.01
ATXN3-221ENST00000553498 KCNQ2O43526 872 aa8.73□□□□□ -1.01
ATXN3-221ENST00000553498 NR1I2O75469 434 aa8.73□□□□□ -1.01
ATXN3-221ENST00000553498 TAF5LO75529 589 aa8.73□□□□□ -1.01
ATXN3-221ENST00000553498 IGHMBP2P38935 993 aaKnown RBP8.73□□□□□ -1.01
ATXN3-221ENST00000553498 TIMM10P62072 90 aa8.73□□□□□ -1.01
ATXN3-221ENST00000553498 SF3B3Q15393 1217 aaKnown RBP8.73□□□□□ -1.01
ATXN3-221ENST00000553498 PUM3Q15397 648 aaKnown RBP8.73□□□□□ -1.01
ATXN3-221ENST00000553498 CREB3L3Q68CJ9 461 aa8.73□□□□□ -1.01
ATXN3-221ENST00000553498 TMED8Q6PL24 325 aaPredicted RBP8.73□□□□□ -1.01
ATXN3-221ENST00000553498 RUFY3Q7L099 469 aa8.73□□□□□ -1.01
ATXN3-221ENST00000553498 PARP9Q8IXQ6 854 aa8.73□□□□□ -1.01
ATXN3-221ENST00000553498 VGLL2Q8N8G2 317 aa8.73□□□□□ -1.01
ATXN3-221ENST00000553498 ZNF594Q96JF6 807 aaPredicted RBP8.73□□□□□ -1.01
ATXN3-221ENST00000553498 FAM227BQ96M60 508 aa8.73□□□□□ -1.01
ATXN3-221ENST00000553498 IL25Q9H293 177 aa8.73□□□□□ -1.01
ATXN3-221ENST00000553498 NARFQ9UHQ1 456 aa8.73□□□□□ -1.01
ATXN3-221ENST00000553498 NIP7Q9Y221 180 aaKnown RBP eCLIP8.73□□□□□ -1.01
ATXN3-221ENST00000553498 SLC27A5Q9Y2P5 690 aa8.73□□□□□ -1.01
ATXN3-221ENST00000553498 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.73□□□□□ -1.01
ATXN3-221ENST00000553498 RBM8AQ9Y5S9 174 aaKnown RBP8.73□□□□□ -1.01
ATXN3-221ENST00000553498 A0A0D9SFI3 127 aa8.72□□□□□ -1.01
ATXN3-221ENST00000553498 RNF113AO15541 343 aaKnown RBP8.72□□□□□ -1.01
ATXN3-221ENST00000553498 CYP2E1P05181 493 aaPredicted RBP8.72□□□□□ -1.01
ATXN3-221ENST00000553498 HSPA1LP34931 641 aa8.72□□□□□ -1.01
ATXN3-221ENST00000553498 ZMYM1Q5SVZ6 1142 aa8.72□□□□□ -1.01
ATXN3-221ENST00000553498 PRPF40BQ6NWY9 871 aaKnown RBP8.72□□□□□ -1.01
ATXN3-221ENST00000553498 LINC00116Q8NCU8 138 aa8.72□□□□□ -1.01
ATXN3-221ENST00000553498 TTC14Q96N46 770 aa8.72□□□□□ -1.01
ATXN3-221ENST00000553498 MPHOSPH8Q99549 860 aa8.72□□□□□ -1.01
ATXN3-221ENST00000553498 PUS3Q9BZE2 481 aaKnown RBP8.72□□□□□ -1.01
ATXN3-221ENST00000553498 CTNNA3Q9UI47 895 aa8.72□□□□□ -1.01
ATXN3-221ENST00000553498 RTCBQ9Y3I0 505 aaKnown RBP8.72□□□□□ -1.01
ATXN3-221ENST00000553498 AFF2P51816 1311 aa8.72□□□□□ -1.01
ATXN3-221ENST00000553498 RPAP1Q9BWH6 1393 aaPredicted RBP8.72□□□□□ -1.01
ATXN3-221ENST00000553498 RIC1Q4ADV7 1423 aa8.71□□□□□ -1.01
ATXN3-221ENST00000553498 TUBGCP6Q96RT7 1819 aa8.71□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms