RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 PHKA1P46020 1223 aa12.74□□□□□ -0.37
CCDC88C-206ENST00000553437 CRKP46108 304 aa12.74□□□□□ -0.37
CCDC88C-206ENST00000553437 RBM5P52756 815 aaKnown RBP eCLIP12.74□□□□□ -0.37
CCDC88C-206ENST00000553437 FKBP1BP68106 108 aa12.74□□□□□ -0.37
CCDC88C-206ENST00000553437 HDLBPQ00341 1268 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-206ENST00000553437 RGMBQ6NW40 437 aa12.74□□□□□ -0.37
CCDC88C-206ENST00000553437 MOB2Q70IA6 237 aa12.74□□□□□ -0.37
CCDC88C-206ENST00000553437 ZIC5Q96T25 663 aa12.74□□□□□ -0.37
CCDC88C-206ENST00000553437 MRIQ9BWK5 157 aa12.74□□□□□ -0.37
CCDC88C-206ENST00000553437 DEFB129Q9H1M3 183 aa12.74□□□□□ -0.37
CCDC88C-206ENST00000553437 SUGT1Q9Y2Z0 365 aa12.74□□□□□ -0.37
CCDC88C-206ENST00000553437 MYO1BO43795 1136 aa12.73□□□□□ -0.37
CCDC88C-206ENST00000553437 MAP2K1Q02750 393 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-206ENST00000553437 SPDYE2Q495Y8 402 aa12.73□□□□□ -0.37
CCDC88C-206ENST00000553437 CCDC102BQ68D86 513 aa12.73□□□□□ -0.37
CCDC88C-206ENST00000553437 WDR66Q8TBY9 1149 aa12.73□□□□□ -0.37
CCDC88C-206ENST00000553437 XAGE2Q96GT9 111 aa12.73□□□□□ -0.37
CCDC88C-206ENST00000553437 TDRD3Q9H7E2 651 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-206ENST00000553437 GNL3LQ9NVN8 582 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-206ENST00000553437 ZNF70Q9UC06 446 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-206ENST00000553437 AKAP2Q9Y2D5 859 aa12.73□□□□□ -0.37
CCDC88C-206ENST00000553437 TRPM7Q96QT4 1865 aa12.73□□□□□ -0.37
CCDC88C-206ENST00000553437 TNRC18O15417 2968 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-206ENST00000553437 UBE2Q2LH0YL09 131 aa12.72□□□□□ -0.37
CCDC88C-206ENST00000553437 SEMA3EO15041 775 aa12.72□□□□□ -0.37
CCDC88C-206ENST00000553437 MS4A1P11836 297 aa12.72□□□□□ -0.37
CCDC88C-206ENST00000553437 ZNF157P51786 506 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-206ENST00000553437 NOGQ13253 232 aa12.72□□□□□ -0.37
CCDC88C-206ENST00000553437 G3BP1Q13283 466 aaKnown RBP eCLIP12.72□□□□□ -0.37
CCDC88C-206ENST00000553437 APOBEC3HQ6NTF7 200 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-206ENST00000553437 CEP85Q6P2H3 762 aa12.72□□□□□ -0.37
CCDC88C-206ENST00000553437 CCDC102AQ96A19 550 aa12.72□□□□□ -0.37
CCDC88C-206ENST00000553437 PLSCR2Q9NRY7 297 aa12.72□□□□□ -0.37
CCDC88C-206ENST00000553437 NOP58Q9Y2X3 529 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-206ENST00000553437 PPP2R3BQ9Y5P8 575 aa12.72□□□□□ -0.37
CCDC88C-206ENST00000553437 SALL1Q9NSC2 1324 aa12.71□□□□□ -0.37
CCDC88C-206ENST00000553437 ABCB7O75027 752 aa12.71□□□□□ -0.37
CCDC88C-206ENST00000553437 SLC10A3P09131 477 aa12.71□□□□□ -0.37
CCDC88C-206ENST00000553437 RASGRF1Q13972 1273 aa12.71□□□□□ -0.37
CCDC88C-206ENST00000553437 RASA3Q14644 834 aa12.71□□□□□ -0.37
CCDC88C-206ENST00000553437 MVPQ14764 893 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-206ENST00000553437 HHIPL2Q6UWX4 724 aa12.71□□□□□ -0.37
CCDC88C-206ENST00000553437 TEKT1Q969V4 418 aa12.71□□□□□ -0.37
CCDC88C-206ENST00000553437 ZDHHC15Q96MV8 337 aa12.71□□□□□ -0.37
CCDC88C-206ENST00000553437 VEZTQ9HBM0 779 aa12.71□□□□□ -0.37
CCDC88C-206ENST00000553437 DENND2AQ9ULE3 1009 aa12.71□□□□□ -0.37
CCDC88C-206ENST00000553437 THSD7BQ9C0I4 1608 aa12.7□□□□□ -0.38
CCDC88C-206ENST00000553437 SURF6O75683 361 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-206ENST00000553437 HSPA8P11142 646 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-206ENST00000553437 PRDX5P30044 214 aa12.7□□□□□ -0.38
CCDC88C-206ENST00000553437 NF2P35240 595 aa12.7□□□□□ -0.38
CCDC88C-206ENST00000553437 CTCFP49711 727 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-206ENST00000553437 LDLRAD1Q5T700 205 aa12.7□□□□□ -0.38
CCDC88C-206ENST00000553437 NBPF12Q5TAG4 269 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-206ENST00000553437 RASAL3Q86YV0 1011 aa12.7□□□□□ -0.38
CCDC88C-206ENST00000553437 AIDAQ96BJ3 306 aa12.7□□□□□ -0.38
CCDC88C-206ENST00000553437 NEUROD6Q96NK8 337 aa12.7□□□□□ -0.38
CCDC88C-206ENST00000553437 GPR108Q9NPR9 543 aa12.7□□□□□ -0.38
CCDC88C-206ENST00000553437 FZD1Q9UP38 647 aa12.7□□□□□ -0.38
CCDC88C-206ENST00000553437 COG6Q9Y2V7 657 aa12.7□□□□□ -0.38
CCDC88C-206ENST00000553437 POLR2AP24928 1970 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-206ENST00000553437 SSC5DA1L4H1 1573 aa12.69□□□□□ -0.38
CCDC88C-206ENST00000553437 MAST3O60307 1309 aa12.69□□□□□ -0.38
CCDC88C-206ENST00000553437 PDS5AQ29RF7 1337 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-206ENST00000553437 KIF23Q02241 960 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-206ENST00000553437 TTLL12Q14166 644 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-206ENST00000553437 MAP3K11Q16584 847 aa12.69□□□□□ -0.38
CCDC88C-206ENST00000553437 C20orf194Q5TEA3 1177 aa12.69□□□□□ -0.38
CCDC88C-206ENST00000553437 TEPSINQ96N21 525 aa12.69□□□□□ -0.38
CCDC88C-206ENST00000553437 PRDM10Q9NQV6 1147 aa12.69□□□□□ -0.38
CCDC88C-206ENST00000553437 ZBTB40Q9NUA8 1239 aa12.69□□□□□ -0.38
CCDC88C-206ENST00000553437 TCP10L2B9ZVM9 353 aa12.68□□□□□ -0.38
CCDC88C-206ENST00000553437 LDHBP07195 334 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-206ENST00000553437 LBX1P52954 281 aa12.68□□□□□ -0.38
CCDC88C-206ENST00000553437 TNFAIP1Q13829 316 aa12.68□□□□□ -0.38
CCDC88C-206ENST00000553437 PRKG1Q13976 671 aa12.68□□□□□ -0.38
CCDC88C-206ENST00000553437 DIXDC1Q155Q3 683 aa12.68□□□□□ -0.38
CCDC88C-206ENST00000553437 SUPT20HL1Q3ZLR7 823 aa12.68□□□□□ -0.38
CCDC88C-206ENST00000553437 TNNI3KQ59H18 835 aa12.68□□□□□ -0.38
CCDC88C-206ENST00000553437 ARMC9Q7Z3E5 817 aa12.68□□□□□ -0.38
CCDC88C-206ENST00000553437 CDAN1Q8IWY9 1227 aa12.68□□□□□ -0.38
CCDC88C-206ENST00000553437 HMG20BQ9P0W2 317 aa12.68□□□□□ -0.38
CCDC88C-206ENST00000553437 DDX19BQ9UMR2 479 aa12.68□□□□□ -0.38
CCDC88C-206ENST00000553437 DAGLAQ9Y4D2 1042 aa12.68□□□□□ -0.38
CCDC88C-206ENST00000553437 FPGT-TNNI3KV9GXZ4 949 aa12.68□□□□□ -0.38
CCDC88C-206ENST00000553437 PAPPA2Q9BXP8 1791 aa12.68□□□□□ -0.38
CCDC88C-206ENST00000553437 USP2O75604 605 aaPredicted RBP12.67□□□□□ -0.38
CCDC88C-206ENST00000553437 ARID4AP29374 1257 aaPredicted RBP12.67□□□□□ -0.38
CCDC88C-206ENST00000553437 CACNB3P54284 484 aa12.67□□□□□ -0.38
CCDC88C-206ENST00000553437 PDE3AQ14432 1141 aa12.67□□□□□ -0.38
CCDC88C-206ENST00000553437 FKBP1CQ5VVH2 108 aa12.67□□□□□ -0.38
CCDC88C-206ENST00000553437 SIRT2Q8IXJ6 389 aa12.67□□□□□ -0.38
CCDC88C-206ENST00000553437 CSRNP1Q96S65 589 aa12.67□□□□□ -0.38
CCDC88C-206ENST00000553437 TMEM39BQ9GZU3 492 aa12.67□□□□□ -0.38
CCDC88C-206ENST00000553437 ANGEL1Q9UNK9 670 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-206ENST00000553437 PPP1R12BO60237 982 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-206ENST00000553437 OS9Q13438 667 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-206ENST00000553437 GORABQ5T7V8 394 aa12.66□□□□□ -0.38
CCDC88C-206ENST00000553437 CDC42EP5Q6NZY7 148 aa12.66□□□□□ -0.38
CCDC88C-206ENST00000553437 PI16Q6UXB8 463 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms