RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 TBX22Q9Y458 520 aa13.04□□□□□ -0.32
SYNE2-208ENST00000553289 LDHBP07195 334 aaKnown RBP13.03□□□□□ -0.32
SYNE2-208ENST00000553289 PARP10Q53GL7 1025 aa13.03□□□□□ -0.32
SYNE2-208ENST00000553289 CCDC129Q6ZRS4 1044 aa13.03□□□□□ -0.32
SYNE2-208ENST00000553289 MAST1Q9Y2H9 1570 aa13.03□□□□□ -0.32
SYNE2-208ENST00000553289 DEXIO95424 95 aa13.03□□□□□ -0.32
SYNE2-208ENST00000553289 DHX37Q8IY37 1157 aaKnown RBP13.03□□□□□ -0.32
SYNE2-208ENST00000553289 PPP1R14CQ8TAE6 165 aa13.03□□□□□ -0.32
SYNE2-208ENST00000553289 METTL22Q9BUU2 404 aaPredicted RBP13.03□□□□□ -0.32
SYNE2-208ENST00000553289 PPP2R5BQ15173 497 aa13.03□□□□□ -0.32
SYNE2-208ENST00000553289 TTC6Q86TZ1 520 aa13.03□□□□□ -0.32
SYNE2-208ENST00000553289 EYA3Q99504 573 aa13.03□□□□□ -0.32
SYNE2-208ENST00000553289 IQCGQ9H095 443 aaKnown RBP13.03□□□□□ -0.32
SYNE2-208ENST00000553289 PTGS1P23219 599 aa13.03□□□□□ -0.32
SYNE2-208ENST00000553289 HSP90AA4PQ58FG1 418 aa13.03□□□□□ -0.32
SYNE2-208ENST00000553289 ADGRL2O95490 1459 aa13.02□□□□□ -0.32
SYNE2-208ENST00000553289 MCM6Q14566 821 aa13.02□□□□□ -0.32
SYNE2-208ENST00000553289 MSANTD4Q8NCY6 345 aa13.02□□□□□ -0.32
SYNE2-208ENST00000553289 ZC3H12CQ9C0D7 883 aaKnown RBP13.02□□□□□ -0.32
SYNE2-208ENST00000553289 KIF4AO95239 1232 aa13.02□□□□□ -0.33
SYNE2-208ENST00000553289 IL13P35225 146 aa13.02□□□□□ -0.33
SYNE2-208ENST00000553289 TNNI2P48788 182 aa13.02□□□□□ -0.33
SYNE2-208ENST00000553289 TNNC1P63316 161 aa13.02□□□□□ -0.33
SYNE2-208ENST00000553289 PZPP20742 1482 aa13.02□□□□□ -0.33
SYNE2-208ENST00000553289 MCM7P33993 719 aa13.02□□□□□ -0.33
SYNE2-208ENST00000553289 VAV2P52735 878 aa13.02□□□□□ -0.33
SYNE2-208ENST00000553289 PICALMQ13492 652 aa13.02□□□□□ -0.33
SYNE2-208ENST00000553289 TNNI3KQ59H18 835 aa13.02□□□□□ -0.33
SYNE2-208ENST00000553289 CDCA7Q9BWT1 371 aaPredicted RBP13.02□□□□□ -0.33
SYNE2-208ENST00000553289 GLT8D2Q9H1C3 349 aa13.02□□□□□ -0.33
SYNE2-208ENST00000553289 RTCBQ9Y3I0 505 aaKnown RBP13.02□□□□□ -0.33
SYNE2-208ENST00000553289 MRVI1Q9Y6F6 885 aa13.02□□□□□ -0.33
SYNE2-208ENST00000553289 FPGT-TNNI3KV9GXZ4 949 aa13.02□□□□□ -0.33
SYNE2-208ENST00000553289 AKR1B15C9JRZ8 316 aaPredicted RBP13.02□□□□□ -0.33
SYNE2-208ENST00000553289 CHL1O00533 1208 aa13.02□□□□□ -0.33
SYNE2-208ENST00000553289 KRT24Q2M2I5 525 aa13.02□□□□□ -0.33
SYNE2-208ENST00000553289 ANKS4BQ8N8V4 417 aa13.02□□□□□ -0.33
SYNE2-208ENST00000553289 SLC27A2O14975 620 aa13.01□□□□□ -0.33
SYNE2-208ENST00000553289 CCDC65Q8IXS2 484 aa13.01□□□□□ -0.33
SYNE2-208ENST00000553289 DRC1Q96MC2 740 aa13.01□□□□□ -0.33
SYNE2-208ENST00000553289 PARP1P09874 1014 aaKnown RBP13.01□□□□□ -0.33
SYNE2-208ENST00000553289 VWA3BQ502W6 1294 aa13.01□□□□□ -0.33
SYNE2-208ENST00000553289 SBNO2Q9Y2G9 1366 aa13.01□□□□□ -0.33
SYNE2-208ENST00000553289 KIF21AQ7Z4S6 1674 aa13.01□□□□□ -0.33
SYNE2-208ENST00000553289 SV2BQ7L1I2 683 aa13.01□□□□□ -0.33
SYNE2-208ENST00000553289 CHST3Q7LGC8 479 aa13.01□□□□□ -0.33
SYNE2-208ENST00000553289 TRMT1LQ7Z2T5 733 aaKnown RBP13.01□□□□□ -0.33
SYNE2-208ENST00000553289 APPBP2Q92624 585 aa13.01□□□□□ -0.33
SYNE2-208ENST00000553289 CEP63Q96MT8 703 aa13.01□□□□□ -0.33
SYNE2-208ENST00000553289 STK24Q9Y6E0 443 aa13.01□□□□□ -0.33
SYNE2-208ENST00000553289 TOM1O60784 492 aa13.01□□□□□ -0.33
SYNE2-208ENST00000553289 BAG1Q99933 345 aaPredicted RBP13.01□□□□□ -0.33
SYNE2-208ENST00000553289 COMMD10Q9Y6G5 202 aa13.01□□□□□ -0.33
SYNE2-208ENST00000553289 KDM2BQ8NHM5 1336 aa13.01□□□□□ -0.33
SYNE2-208ENST00000553289 SGSM2O43147 1006 aa13□□□□□ -0.33
SYNE2-208ENST00000553289 MBD4O95243 580 aa13□□□□□ -0.33
SYNE2-208ENST00000553289 PUM3Q15397 648 aaKnown RBP13□□□□□ -0.33
SYNE2-208ENST00000553289 ZNF569Q5MCW4 686 aa13□□□□□ -0.33
SYNE2-208ENST00000553289 MIGA1Q8NAN2 632 aa13□□□□□ -0.33
SYNE2-208ENST00000553289 RNF216Q9NWF9 866 aaPredicted RBP13□□□□□ -0.33
SYNE2-208ENST00000553289 MTRF1LQ9UGC7 380 aaKnown RBP13□□□□□ -0.33
SYNE2-208ENST00000553289 ANO1Q5XXA6 986 aa13□□□□□ -0.33
SYNE2-208ENST00000553289 CLSTN2Q9H4D0 955 aa13□□□□□ -0.33
SYNE2-208ENST00000553289 GUCA1BQ9UMX6 200 aa13□□□□□ -0.33
SYNE2-208ENST00000553289 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13□□□□□ -0.33
SYNE2-208ENST00000553289 ZMYM3Q14202 1370 aa13□□□□□ -0.33
SYNE2-208ENST00000553289 A0A1B0GUL7 405 aa13□□□□□ -0.33
SYNE2-208ENST00000553289 ZNF790Q6PG37 636 aa13□□□□□ -0.33
SYNE2-208ENST00000553289 FBF1Q8TES7 1133 aa13□□□□□ -0.33
SYNE2-208ENST00000553289 SH2D4AQ9H788 454 aa13□□□□□ -0.33
SYNE2-208ENST00000553289 PABPN1LA6NDY0 278 aaKnown RBP13□□□□□ -0.33
SYNE2-208ENST00000553289 CUTAO60888 179 aa13□□□□□ -0.33
SYNE2-208ENST00000553289 ACSBG1Q96GR2 724 aa13□□□□□ -0.33
SYNE2-208ENST00000553289 JAKMIP2Q96AA8 810 aa12.99□□□□□ -0.33
SYNE2-208ENST00000553289 ANGEL1Q9UNK9 670 aaKnown RBP12.99□□□□□ -0.33
SYNE2-208ENST00000553289 SNX14Q9Y5W7 946 aa12.99□□□□□ -0.33
SYNE2-208ENST00000553289 STX17P56962 302 aa12.99□□□□□ -0.33
SYNE2-208ENST00000553289 SYT10Q6XYQ8 523 aa12.99□□□□□ -0.33
SYNE2-208ENST00000553289 ERO1AQ96HE7 468 aa12.99□□□□□ -0.33
SYNE2-208ENST00000553289 SEC24BO95487 1268 aa12.99□□□□□ -0.33
SYNE2-208ENST00000553289 MTUS1Q9ULD2 1270 aa12.99□□□□□ -0.33
SYNE2-208ENST00000553289 TTF2Q9UNY4 1162 aaKnown RBP12.99□□□□□ -0.33
SYNE2-208ENST00000553289 CEP83Q9Y592 693 aa12.99□□□□□ -0.33
SYNE2-208ENST00000553289 KIAA0232Q92628 1395 aa12.99□□□□□ -0.33
SYNE2-208ENST00000553289 F8W031 263 aaPredicted RBP12.99□□□□□ -0.33
SYNE2-208ENST00000553289 CNNM4Q6P4Q7 775 aa12.99□□□□□ -0.33
SYNE2-208ENST00000553289 CCDC94Q9BW85 323 aaPredicted RBP12.99□□□□□ -0.33
SYNE2-208ENST00000553289 IMPACTQ9P2X3 320 aa12.99□□□□□ -0.33
SYNE2-208ENST00000553289 BLMP54132 1417 aaPredicted RBP12.99□□□□□ -0.33
SYNE2-208ENST00000553289 GRIPAP1Q4V328 841 aa12.98□□□□□ -0.33
SYNE2-208ENST00000553289 NBPF11Q86T75 865 aa12.98□□□□□ -0.33
SYNE2-208ENST00000553289 ZNF445P59923 1031 aa12.98□□□□□ -0.33
SYNE2-208ENST00000553289 NCBP1Q09161 790 aaKnown RBP12.98□□□□□ -0.33
SYNE2-208ENST00000553289 MLKLQ8NB16 471 aa12.98□□□□□ -0.33
SYNE2-208ENST00000553289 ATRIPQ8WXE1 791 aa12.98□□□□□ -0.33
SYNE2-208ENST00000553289 NAP1L3Q99457 506 aaPredicted RBP12.98□□□□□ -0.33
SYNE2-208ENST00000553289 LZTFL1Q9NQ48 299 aa12.98□□□□□ -0.33
SYNE2-208ENST00000553289 CEP128Q6ZU80 1094 aa12.98□□□□□ -0.33
SYNE2-208ENST00000553289 HDXQ7Z353 690 aa12.98□□□□□ -0.33
SYNE2-208ENST00000553289 PLXNC1O60486 1568 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms