RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 NME2P22392 152 aa9.09□□□□□ -0.95
LIMA1-210ENST00000552045 FOXR1Q6PIV2 292 aa9.09□□□□□ -0.95
LIMA1-210ENST00000552045 CCDC81Q6ZN84 652 aa9.09□□□□□ -0.95
LIMA1-210ENST00000552045 PPT2Q9UMR5 302 aa9.09□□□□□ -0.95
LIMA1-210ENST00000552045 SBNO2Q9Y2G9 1366 aa9.09□□□□□ -0.95
LIMA1-210ENST00000552045 GPR25O00155 361 aa9.08□□□□□ -0.96
LIMA1-210ENST00000552045 U2SURPO15042 1029 aaKnown RBP9.08□□□□□ -0.96
LIMA1-210ENST00000552045 CPB1P15086 417 aa9.08□□□□□ -0.96
LIMA1-210ENST00000552045 MPP2Q14168 576 aa9.08□□□□□ -0.96
LIMA1-210ENST00000552045 ZNF423Q2M1K9 1284 aa9.08□□□□□ -0.96
LIMA1-210ENST00000552045 ADAMTSL4Q6UY14 1074 aa9.08□□□□□ -0.96
LIMA1-210ENST00000552045 VN1R5Q7Z5H4 357 aa9.08□□□□□ -0.96
LIMA1-210ENST00000552045 FAM35AQ86V20 835 aa9.08□□□□□ -0.96
LIMA1-210ENST00000552045 JARID2Q92833 1246 aaPredicted RBP9.08□□□□□ -0.96
LIMA1-210ENST00000552045 PLD4Q96BZ4 506 aa9.08□□□□□ -0.96
LIMA1-210ENST00000552045 SOX13Q9UN79 622 aa9.08□□□□□ -0.96
LIMA1-210ENST00000552045 R3HCC1Q9Y3T6 440 aaKnown RBP9.08□□□□□ -0.96
LIMA1-210ENST00000552045 MRPL42Q9Y6G3 142 aaKnown RBP9.08□□□□□ -0.96
LIMA1-210ENST00000552045 C2CD2LO14523 706 aa9.07□□□□□ -0.96
LIMA1-210ENST00000552045 SEPT6Q14141 434 aa9.07□□□□□ -0.96
LIMA1-210ENST00000552045 LRRC14Q15048 493 aa9.07□□□□□ -0.96
LIMA1-210ENST00000552045 TCEAL1Q15170 157 aa9.07□□□□□ -0.96
LIMA1-210ENST00000552045 CWF19L2Q2TBE0 894 aaKnown RBP9.07□□□□□ -0.96
LIMA1-210ENST00000552045 SULF2Q8IWU5 870 aa9.07□□□□□ -0.96
LIMA1-210ENST00000552045 MICALL1Q8N3F8 863 aa9.07□□□□□ -0.96
LIMA1-210ENST00000552045 TNFRSF25Q93038 417 aa9.07□□□□□ -0.96
LIMA1-210ENST00000552045 SRPK1Q96SB4 655 aaKnown RBP9.07□□□□□ -0.96
LIMA1-210ENST00000552045 ADAM19Q9H013 955 aa9.07□□□□□ -0.96
LIMA1-210ENST00000552045 SLC6A14Q9UN76 642 aa9.07□□□□□ -0.96
LIMA1-210ENST00000552045 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.07□□□□□ -0.96
LIMA1-210ENST00000552045 SMAD7O15105 426 aaKnown RBP9.06□□□□□ -0.96
LIMA1-210ENST00000552045 CILPO75339 1184 aa9.06□□□□□ -0.96
LIMA1-210ENST00000552045 PTPRAP18433 802 aa9.06□□□□□ -0.96
LIMA1-210ENST00000552045 MCM4P33991 863 aa9.06□□□□□ -0.96
LIMA1-210ENST00000552045 ZNF165P49910 485 aa9.06□□□□□ -0.96
LIMA1-210ENST00000552045 EIF6P56537 245 aaKnown RBP9.06□□□□□ -0.96
LIMA1-210ENST00000552045 PCBP4P57723 403 aaKnown RBP9.06□□□□□ -0.96
LIMA1-210ENST00000552045 TNNI3KQ59H18 835 aa9.06□□□□□ -0.96
LIMA1-210ENST00000552045 PERM1Q5SV97 790 aa9.06□□□□□ -0.96
LIMA1-210ENST00000552045 STK35Q8TDR2 534 aa9.06□□□□□ -0.96
LIMA1-210ENST00000552045 AVENQ9NQS1 362 aaPredicted RBP9.06□□□□□ -0.96
LIMA1-210ENST00000552045 CDC14CA4D256 554 aa9.05□□□□□ -0.96
LIMA1-210ENST00000552045 BMP4P12644 408 aa9.05□□□□□ -0.96
LIMA1-210ENST00000552045 ARNTP27540 789 aa9.05□□□□□ -0.96
LIMA1-210ENST00000552045 GIPRP48546 466 aa9.05□□□□□ -0.96
LIMA1-210ENST00000552045 DIEXFQ68CQ4 756 aaKnown RBP9.05□□□□□ -0.96
LIMA1-210ENST00000552045 LLGL2Q6P1M3 1020 aa9.05□□□□□ -0.96
LIMA1-210ENST00000552045 REC114Q7Z4M0 266 aa9.05□□□□□ -0.96
LIMA1-210ENST00000552045 ANKRD13AQ8IZ07 590 aa9.05□□□□□ -0.96
LIMA1-210ENST00000552045 REXO1Q8N1G1 1221 aaKnown RBP9.05□□□□□ -0.96
LIMA1-210ENST00000552045 FAM169BQ8N8A8 192 aa9.05□□□□□ -0.96
LIMA1-210ENST00000552045 FERD3LQ96RJ6 166 aa9.05□□□□□ -0.96
LIMA1-210ENST00000552045 EMILIN2Q9BXX0 1053 aa9.05□□□□□ -0.96
LIMA1-210ENST00000552045 SMG9Q9H0W8 520 aaKnown RBP9.05□□□□□ -0.96
LIMA1-210ENST00000552045 SNTG2Q9NY99 539 aa9.05□□□□□ -0.96
LIMA1-210ENST00000552045 PPFIA3O75145 1194 aa9.04□□□□□ -0.96
LIMA1-210ENST00000552045 HSD3B2P26439 372 aa9.04□□□□□ -0.96
LIMA1-210ENST00000552045 RASA3Q14644 834 aa9.04□□□□□ -0.96
LIMA1-210ENST00000552045 ELMSAN1Q6PJG2 1045 aa9.04□□□□□ -0.96
LIMA1-210ENST00000552045 LRP10Q7Z4F1 713 aa9.04□□□□□ -0.96
LIMA1-210ENST00000552045 NPAS3Q8IXF0 933 aa9.04□□□□□ -0.96
LIMA1-210ENST00000552045 VWA5B2Q8N398 1253 aa9.04□□□□□ -0.96
LIMA1-210ENST00000552045 GRIN3AQ8TCU5 1115 aa9.04□□□□□ -0.96
LIMA1-210ENST00000552045 DEPDC7Q96QD5 511 aa9.04□□□□□ -0.96
LIMA1-210ENST00000552045 CBX8Q9HC52 389 aa9.04□□□□□ -0.96
LIMA1-210ENST00000552045 BRMS1Q9HCU9 246 aa9.04□□□□□ -0.96
LIMA1-210ENST00000552045 NAGPAQ9UK23 515 aa9.04□□□□□ -0.96
LIMA1-210ENST00000552045 TRIM33Q9UPN9 1127 aa9.04□□□□□ -0.96
LIMA1-210ENST00000552045 BPNT1O95861 308 aa9.03□□□□□ -0.96
LIMA1-210ENST00000552045 ESRRAP11474 423 aaPredicted RBP9.03□□□□□ -0.96
LIMA1-210ENST00000552045 FBXW10Q5XX13 1052 aa9.03□□□□□ -0.96
LIMA1-210ENST00000552045 SV2AQ7L0J3 742 aa9.03□□□□□ -0.96
LIMA1-210ENST00000552045 GAL3ST3Q96A11 431 aa9.03□□□□□ -0.96
LIMA1-210ENST00000552045 CRBNQ96SW2 442 aa9.03□□□□□ -0.96
LIMA1-210ENST00000552045 LPIN3Q9BQK8 851 aa9.03□□□□□ -0.96
LIMA1-210ENST00000552045 LACRTQ9GZZ8 138 aa9.03□□□□□ -0.96
LIMA1-210ENST00000552045 NXF1Q9UBU9 619 aaKnown RBP9.03□□□□□ -0.96
LIMA1-210ENST00000552045 KLF15Q9UIH9 416 aa9.03□□□□□ -0.96
LIMA1-210ENST00000552045 ADARB2-AS1A8MUL3 147 aa9.02□□□□□ -0.97
LIMA1-210ENST00000552045 ADH7P40394 386 aa9.02□□□□□ -0.97
LIMA1-210ENST00000552045 ZNF252P-AS1Q0IIN9 211 aa9.02□□□□□ -0.97
LIMA1-210ENST00000552045 SCARA3Q6AZY7 606 aa9.02□□□□□ -0.97
LIMA1-210ENST00000552045 KANK3Q6NY19 840 aa9.02□□□□□ -0.97
LIMA1-210ENST00000552045 GK5Q6ZS86 529 aa9.02□□□□□ -0.97
LIMA1-210ENST00000552045 OR6P1Q8NGX9 317 aa9.02□□□□□ -0.97
LIMA1-210ENST00000552045 FRRS1LQ9P0K9 344 aa9.02□□□□□ -0.97
LIMA1-210ENST00000552045 ZNRF3Q9ULT6 936 aa9.02□□□□□ -0.97
LIMA1-210ENST00000552045 FAM221BA6H8Z2 402 aa9.01□□□□□ -0.97
LIMA1-210ENST00000552045 FAM177BA6PVY3 158 aa9.01□□□□□ -0.97
LIMA1-210ENST00000552045 IMPDH2P12268 514 aa9.01□□□□□ -0.97
LIMA1-210ENST00000552045 CLCQ05315 142 aa9.01□□□□□ -0.97
LIMA1-210ENST00000552045 IKBKEQ14164 716 aa9.01□□□□□ -0.97
LIMA1-210ENST00000552045 CELF2-AS1Q8N7Q2 184 aa9.01□□□□□ -0.97
LIMA1-210ENST00000552045 DDX54Q8TDD1 881 aaKnown RBP9.01□□□□□ -0.97
LIMA1-210ENST00000552045 NANOS1Q8WY41 292 aaKnown RBP9.01□□□□□ -0.97
LIMA1-210ENST00000552045 RNPC3Q96LT9 517 aaKnown RBP9.01□□□□□ -0.97
LIMA1-210ENST00000552045 MDFIQ99750 246 aa9.01□□□□□ -0.97
LIMA1-210ENST00000552045 SH2B1Q9NRF2 756 aaPredicted RBP9.01□□□□□ -0.97
LIMA1-210ENST00000552045 MSRB2Q9Y3D2 182 aa9.01□□□□□ -0.97
LIMA1-210ENST00000552045 ENPP3O14638 875 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms