RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 NETO1Q8TDF5 533 aa4.13□□□□□ -1.75
LIMA1-209ENST00000552008 PIK3R5Q8WYR1 880 aa4.13□□□□□ -1.75
LIMA1-209ENST00000552008 C20orf173Q96LM9 149 aa4.13□□□□□ -1.75
LIMA1-209ENST00000552008 SEMA6CQ9H3T2 930 aa4.13□□□□□ -1.75
LIMA1-209ENST00000552008 ABI2Q9NYB9 513 aaPredicted RBP4.13□□□□□ -1.75
LIMA1-209ENST00000552008 VAV3Q9UKW4 847 aa4.13□□□□□ -1.75
LIMA1-209ENST00000552008 SOX13Q9UN79 622 aa4.13□□□□□ -1.75
LIMA1-209ENST00000552008 ACTL7BQ9Y614 415 aa4.13□□□□□ -1.75
LIMA1-209ENST00000552008 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.12□□□□□ -1.75
LIMA1-209ENST00000552008 NPIPB6E9PJ23 425 aa4.12□□□□□ -1.75
LIMA1-209ENST00000552008 SOX1O00570 391 aaPredicted RBP4.12□□□□□ -1.75
LIMA1-209ENST00000552008 KRT1P04264 644 aa4.12□□□□□ -1.75
LIMA1-209ENST00000552008 ADH5P11766 374 aa4.12□□□□□ -1.75
LIMA1-209ENST00000552008 WEE1P30291 646 aa4.12□□□□□ -1.75
LIMA1-209ENST00000552008 PRKCQQ04759 706 aa4.12□□□□□ -1.75
LIMA1-209ENST00000552008 IKBKEQ14164 716 aa4.12□□□□□ -1.75
LIMA1-209ENST00000552008 COX20Q5RI15 118 aa4.12□□□□□ -1.75
LIMA1-209ENST00000552008 LARP1Q6PKG0 1096 aaKnown RBP4.12□□□□□ -1.75
LIMA1-209ENST00000552008 ADAMTS19Q8TE59 1207 aa4.12□□□□□ -1.75
LIMA1-209ENST00000552008 FNDC3AQ9Y2H6 1198 aaKnown RBP4.12□□□□□ -1.75
LIMA1-209ENST00000552008 ACIN1Q9UKV3 1341 aaKnown RBP4.12□□□□□ -1.75
LIMA1-209ENST00000552008 PDE2AO00408 941 aaPredicted RBP4.11□□□□□ -1.75
LIMA1-209ENST00000552008 RFX1P22670 979 aa4.11□□□□□ -1.75
LIMA1-209ENST00000552008 CYP27C1Q4G0S4 372 aa4.11□□□□□ -1.75
LIMA1-209ENST00000552008 SLC23A3Q6PIS1 610 aa4.11□□□□□ -1.75
LIMA1-209ENST00000552008 PRR23BQ6ZRT6 265 aa4.11□□□□□ -1.75
LIMA1-209ENST00000552008 FAM181AQ8N9Y4 354 aa4.11□□□□□ -1.75
LIMA1-209ENST00000552008 ACSS3Q9H6R3 686 aa4.11□□□□□ -1.75
LIMA1-209ENST00000552008 C1GALT1Q9NS00 363 aa4.11□□□□□ -1.75
LIMA1-209ENST00000552008 FAM13BQ9NYF5 915 aa4.11□□□□□ -1.75
LIMA1-209ENST00000552008 KANSL3Q9P2N6 904 aa4.11□□□□□ -1.75
LIMA1-209ENST00000552008 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.1□□□□□ -1.75
LIMA1-209ENST00000552008 NFKBIEO00221 500 aa4.1□□□□□ -1.75
LIMA1-209ENST00000552008 DYNC1LI2O43237 492 aaPredicted RBP4.1□□□□□ -1.75
LIMA1-209ENST00000552008 PSPNO60542 156 aa4.1□□□□□ -1.75
LIMA1-209ENST00000552008 ACPPP15309 386 aa4.1□□□□□ -1.75
LIMA1-209ENST00000552008 AOC3Q16853 763 aa4.1□□□□□ -1.75
LIMA1-209ENST00000552008 ANGEL2Q5VTE6 544 aaKnown RBP4.1□□□□□ -1.75
LIMA1-209ENST00000552008 SEZ6L2Q6UXD5 910 aa4.1□□□□□ -1.75
LIMA1-209ENST00000552008 BRD2P25440 801 aaKnown RBP4.09□□□□□ -1.75
LIMA1-209ENST00000552008 PTK7Q13308 1070 aa4.09□□□□□ -1.75
LIMA1-209ENST00000552008 CIAPIN1Q6FI81 312 aa4.09□□□□□ -1.75
LIMA1-209ENST00000552008 MPZL3Q6UWV2 235 aa4.09□□□□□ -1.75
LIMA1-209ENST00000552008 DYMQ7RTS9 669 aa4.09□□□□□ -1.75
LIMA1-209ENST00000552008 VN1R5Q7Z5H4 357 aa4.09□□□□□ -1.75
LIMA1-209ENST00000552008 HRASLS5Q96KN8 279 aa4.09□□□□□ -1.75
LIMA1-209ENST00000552008 HHIPQ96QV1 700 aa4.09□□□□□ -1.75
LIMA1-209ENST00000552008 SOX17Q9H6I2 414 aaPredicted RBP4.09□□□□□ -1.75
LIMA1-209ENST00000552008 FAM105AQ9NUU6 356 aa4.09□□□□□ -1.75
LIMA1-209ENST00000552008 DZANK1Q9NVP4 752 aa4.09□□□□□ -1.75
LIMA1-209ENST00000552008 FOXD2O60548 495 aaPredicted RBP4.08□□□□□ -1.76
LIMA1-209ENST00000552008 TRPA1O75762 1119 aa4.08□□□□□ -1.76
LIMA1-209ENST00000552008 PDIA4P13667 645 aaKnown RBP4.08□□□□□ -1.76
LIMA1-209ENST00000552008 LMOD1P29536 600 aaPredicted RBP4.08□□□□□ -1.76
LIMA1-209ENST00000552008 KCNA10Q16322 511 aa4.08□□□□□ -1.76
LIMA1-209ENST00000552008 IFI16Q16666 785 aaKnown RBP4.08□□□□□ -1.76
LIMA1-209ENST00000552008 ANKMY2Q8IV38 441 aa4.08□□□□□ -1.76
LIMA1-209ENST00000552008 FBXO15Q8NCQ5 510 aaPredicted RBP4.08□□□□□ -1.76
LIMA1-209ENST00000552008 BSNDQ8WZ55 320 aa4.08□□□□□ -1.76
LIMA1-209ENST00000552008 LGR6Q9HBX8 967 aa4.08□□□□□ -1.76
LIMA1-209ENST00000552008 PRDM7Q9NQW5 492 aa4.08□□□□□ -1.76
LIMA1-209ENST00000552008 SALL4Q9UJQ4 1053 aa4.08□□□□□ -1.76
LIMA1-209ENST00000552008 DAGLAQ9Y4D2 1042 aa4.08□□□□□ -1.76
LIMA1-209ENST00000552008 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.08□□□□□ -1.76
LIMA1-209ENST00000552008 PPP1R15AO75807 674 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-209ENST00000552008 GLI1P08151 1106 aa4.07□□□□□ -1.76
LIMA1-209ENST00000552008 TMEM253P0C7T8 217 aa4.07□□□□□ -1.76
LIMA1-209ENST00000552008 GSTM4Q03013 218 aa4.07□□□□□ -1.76
LIMA1-209ENST00000552008 KRTAP1-1Q07627 177 aa4.07□□□□□ -1.76
LIMA1-209ENST00000552008 PDE4CQ08493 712 aa4.07□□□□□ -1.76
LIMA1-209ENST00000552008 FAM26DQ5JW98 314 aa4.07□□□□□ -1.76
LIMA1-209ENST00000552008 FYB2Q5VWT5 728 aa4.07□□□□□ -1.76
LIMA1-209ENST00000552008 TMEM102Q8N9M5 508 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-209ENST00000552008 PPP1R12CQ9BZL4 782 aa4.07□□□□□ -1.76
LIMA1-209ENST00000552008 CD320Q9NPF0 282 aa4.07□□□□□ -1.76
LIMA1-209ENST00000552008 TFIP11Q9UBB9 837 aaKnown RBP4.07□□□□□ -1.76
LIMA1-209ENST00000552008 CTNND2Q9UQB3 1225 aa4.07□□□□□ -1.76
LIMA1-209ENST00000552008 USP17L15C9J2P7 530 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 USP17L10C9JJH3 530 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 USP17L13C9JLJ4 530 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 USP17L12C9JPN9 530 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 USP17L11C9JVI0 530 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 USP17L21D6R901 530 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 USP17L18D6R9N7 530 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 USP17L22D6RA61 530 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 USP17L17D6RBQ6 530 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 USP17L19D6RCP7 530 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 USP17L20D6RJB6 530 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 FAM87AP0C7U9 286 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 AFMP43652 599 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 ASPAP45381 313 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 USP17L24Q0WX57 530 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 AKAP4Q5JQC9 854 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 GGNQ86UU5 652 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 GPR152Q8TDT2 470 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 PBXIP1Q96AQ6 731 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 ELP3Q9H9T3 547 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 PARD6AQ9NPB6 346 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 TMEM63CQ9P1W3 806 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 AP4E1Q9UPM8 1137 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms