RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 NASPP49321 788 aaPredicted RBP16.97■□□□□ 0.31
VPS33A-209ENST00000544349 SLC15A2Q16348 729 aa16.97■□□□□ 0.31
VPS33A-209ENST00000544349 TTLL5Q6EMB2 1281 aa16.97■□□□□ 0.31
VPS33A-209ENST00000544349 STOX1Q6ZVD7 989 aa16.97■□□□□ 0.31
VPS33A-209ENST00000544349 MYH13Q9UKX3 1938 aa16.97■□□□□ 0.31
VPS33A-209ENST00000544349 LAMA4Q16363 1823 aa16.97■□□□□ 0.31
VPS33A-209ENST00000544349 ZBTB22O15209 634 aa16.97■□□□□ 0.31
VPS33A-209ENST00000544349 DTNBO60941 627 aa16.97■□□□□ 0.31
VPS33A-209ENST00000544349 TXNRD3Q86VQ6 643 aa16.97■□□□□ 0.31
VPS33A-209ENST00000544349 ABCF2Q9UG63 623 aa16.97■□□□□ 0.31
VPS33A-209ENST00000544349 PARP3Q9Y6F1 533 aa16.97■□□□□ 0.31
VPS33A-209ENST00000544349 PDS5AQ29RF7 1337 aaKnown RBP16.96■□□□□ 0.31
VPS33A-209ENST00000544349 AIDAQ96BJ3 306 aa16.96■□□□□ 0.31
VPS33A-209ENST00000544349 ZSCAN31Q96LW9 406 aaPredicted RBP16.96■□□□□ 0.31
VPS33A-209ENST00000544349 STRBPQ96SI9 672 aaKnown RBP16.96■□□□□ 0.31
VPS33A-209ENST00000544349 E7EWF7 191 aa16.96■□□□□ 0.3
VPS33A-209ENST00000544349 GPSM2P81274 684 aa16.96■□□□□ 0.3
VPS33A-209ENST00000544349 ANKRD1Q15327 319 aa16.96■□□□□ 0.3
VPS33A-209ENST00000544349 TCEANC2Q96MN5 208 aa16.96■□□□□ 0.3
VPS33A-209ENST00000544349 HMGB1P09429 215 aaKnown RBP16.95■□□□□ 0.3
VPS33A-209ENST00000544349 IMMTQ16891 758 aaKnown RBP16.95■□□□□ 0.3
VPS33A-209ENST00000544349 MSL1Q68DK7 614 aa16.95■□□□□ 0.3
VPS33A-209ENST00000544349 C15orf52Q6ZUT6 534 aaKnown RBP16.95■□□□□ 0.3
VPS33A-209ENST00000544349 RBSNQ9H1K0 784 aa16.95■□□□□ 0.3
VPS33A-209ENST00000544349 GDPD2Q9HCC8 539 aa16.95■□□□□ 0.3
VPS33A-209ENST00000544349 STK32BQ9NY57 414 aa16.95■□□□□ 0.3
VPS33A-209ENST00000544349 TOB2Q14106 344 aaPredicted RBP16.94■□□□□ 0.3
VPS33A-209ENST00000544349 SH2B1Q9NRF2 756 aaPredicted RBP16.94■□□□□ 0.3
VPS33A-209ENST00000544349 RAI14Q9P0K7 980 aa16.94■□□□□ 0.3
VPS33A-209ENST00000544349 QSER1Q2KHR3 1735 aa16.94■□□□□ 0.3
VPS33A-209ENST00000544349 MBD4O95243 580 aa16.94■□□□□ 0.3
VPS33A-209ENST00000544349 ATP2B4P23634 1241 aa16.94■□□□□ 0.3
VPS33A-209ENST00000544349 TMC4Q7Z404 712 aa16.94■□□□□ 0.3
VPS33A-209ENST00000544349 TPCN1Q9ULQ1 816 aa16.94■□□□□ 0.3
VPS33A-209ENST00000544349 SYCE3A1L190 88 aa16.93■□□□□ 0.3
VPS33A-209ENST00000544349 PATL2C9JE40 543 aaKnown RBP16.93■□□□□ 0.3
VPS33A-209ENST00000544349 SRGNP10124 158 aa16.93■□□□□ 0.3
VPS33A-209ENST00000544349 PDE6BP35913 854 aa16.93■□□□□ 0.3
VPS33A-209ENST00000544349 ST3GAL1Q11201 340 aa16.93■□□□□ 0.3
VPS33A-209ENST00000544349 CACNA1SQ13698 1873 aa16.93■□□□□ 0.3
VPS33A-209ENST00000544349 ME3Q16798 604 aa16.93■□□□□ 0.3
VPS33A-209ENST00000544349 DHX32Q7L7V1 743 aaKnown RBP16.93■□□□□ 0.3
VPS33A-209ENST00000544349 ARMT1Q9H993 441 aa16.93■□□□□ 0.3
VPS33A-209ENST00000544349 PODXL2Q9NZ53 605 aa16.93■□□□□ 0.3
VPS33A-209ENST00000544349 GADD45BO75293 160 aaPredicted RBP16.93■□□□□ 0.3
VPS33A-209ENST00000544349 APPP05067 770 aa16.93■□□□□ 0.3
VPS33A-209ENST00000544349 CYP7A1P22680 504 aa16.93■□□□□ 0.3
VPS33A-209ENST00000544349 HAND2P61296 217 aa16.93■□□□□ 0.3
VPS33A-209ENST00000544349 SF3B2Q13435 895 aaKnown RBP16.93■□□□□ 0.3
VPS33A-209ENST00000544349 LRRC37AA6NMS7 1700 aa16.92■□□□□ 0.3
VPS33A-209ENST00000544349 WDR33Q9C0J8 1336 aaKnown RBP16.92■□□□□ 0.3
VPS33A-209ENST00000544349 ZNF213O14771 459 aa16.92■□□□□ 0.3
VPS33A-209ENST00000544349 NPR1P16066 1061 aa16.92■□□□□ 0.3
VPS33A-209ENST00000544349 BAG6P46379 1132 aa16.92■□□□□ 0.3
VPS33A-209ENST00000544349 EXOSC10Q01780 885 aaKnown RBP16.92■□□□□ 0.3
VPS33A-209ENST00000544349 ALX1Q15699 326 aa16.92■□□□□ 0.3
VPS33A-209ENST00000544349 SP8Q8IXZ3 490 aa16.92■□□□□ 0.3
VPS33A-209ENST00000544349 PPP1R9BQ96SB3 815 aa16.92■□□□□ 0.3
VPS33A-209ENST00000544349 GGA1Q9UJY5 639 aa16.92■□□□□ 0.3
VPS33A-209ENST00000544349 PPEF1O14829 653 aaPredicted RBP16.91■□□□□ 0.3
VPS33A-209ENST00000544349 UFL1O94874 794 aa16.91■□□□□ 0.3
VPS33A-209ENST00000544349 CCDC173Q0VFZ6 552 aa16.91■□□□□ 0.3
VPS33A-209ENST00000544349 Q6ZUG5 572 aa16.91■□□□□ 0.3
VPS33A-209ENST00000544349 ADGRA1Q86SQ6 560 aa16.91■□□□□ 0.3
VPS33A-209ENST00000544349 LCORLQ8N3X6 602 aa16.91■□□□□ 0.3
VPS33A-209ENST00000544349 TDRD7Q8NHU6 1098 aaKnown RBP16.91■□□□□ 0.3
VPS33A-209ENST00000544349 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.91■□□□□ 0.3
VPS33A-209ENST00000544349 ZMYM6O95789 1325 aa16.91■□□□□ 0.3
VPS33A-209ENST00000544349 GNAT2P19087 354 aa16.91■□□□□ 0.3
VPS33A-209ENST00000544349 CLCN1P35523 988 aa16.91■□□□□ 0.3
VPS33A-209ENST00000544349 CHAF1AQ13111 956 aaPredicted RBP16.91■□□□□ 0.3
VPS33A-209ENST00000544349 ZNF804AQ7Z570 1209 aa16.91■□□□□ 0.3
VPS33A-209ENST00000544349 CCDC83Q8IWF9 413 aa16.91■□□□□ 0.3
VPS33A-209ENST00000544349 IFNL3Q8IZI9 196 aa16.91■□□□□ 0.3
VPS33A-209ENST00000544349 MIGA1Q8NAN2 632 aa16.91■□□□□ 0.3
VPS33A-209ENST00000544349 GPR101Q96P66 508 aaPredicted RBP16.91■□□□□ 0.3
VPS33A-209ENST00000544349 GSG1L2A8MUP6 293 aa16.9■□□□□ 0.3
VPS33A-209ENST00000544349 ESPNB1AK53 854 aa16.9■□□□□ 0.3
VPS33A-209ENST00000544349 MBD3O95983 291 aa16.9■□□□□ 0.3
VPS33A-209ENST00000544349 ALDH1B1P30837 517 aa16.9■□□□□ 0.3
VPS33A-209ENST00000544349 ZNF384Q8TF68 577 aa16.9■□□□□ 0.3
VPS33A-209ENST00000544349 EPB41L4AQ9HCS5 686 aaPredicted RBP16.9■□□□□ 0.3
VPS33A-209ENST00000544349 COL11A2P13942 1736 aaPredicted RBP16.9■□□□□ 0.3
VPS33A-209ENST00000544349 LTBP1Q14766 1721 aa16.9■□□□□ 0.3
VPS33A-209ENST00000544349 NAA16Q6N069 864 aaPredicted RBP16.9■□□□□ 0.3
VPS33A-209ENST00000544349 LRSAM1Q6UWE0 723 aa16.9■□□□□ 0.3
VPS33A-209ENST00000544349 DEFB132Q7Z7B7 95 aa16.9■□□□□ 0.3
VPS33A-209ENST00000544349 TBC1D16Q8TBP0 767 aa16.9■□□□□ 0.3
VPS33A-209ENST00000544349 NSUN4Q96CB9 384 aaKnown RBP16.9■□□□□ 0.3
VPS33A-209ENST00000544349 POLLQ9UGP5 575 aa16.9■□□□□ 0.3
VPS33A-209ENST00000544349 ATP6V0A2Q9Y487 856 aa16.9■□□□□ 0.3
VPS33A-209ENST00000544349 MAGEB6P1A0A0J9YX57 407 aa16.89■□□□□ 0.29
VPS33A-209ENST00000544349 PRKAB2O43741 272 aa16.89■□□□□ 0.29
VPS33A-209ENST00000544349 SYT1P21579 422 aa16.89■□□□□ 0.29
VPS33A-209ENST00000544349 MASTLQ96GX5 879 aa16.89■□□□□ 0.29
VPS33A-209ENST00000544349 LRRC2Q9BYS8 371 aa16.89■□□□□ 0.29
VPS33A-209ENST00000544349 AGXT2Q9BYV1 514 aa16.89■□□□□ 0.29
VPS33A-209ENST00000544349 SLC4A4Q9Y6R1 1079 aa16.89■□□□□ 0.29
VPS33A-209ENST00000544349 CCDC88AQ3V6T2 1871 aa16.89■□□□□ 0.29
VPS33A-209ENST00000544349 ZSCAN22P10073 491 aaPredicted RBP16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms