RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 VEGFBP49765 207 aa12.01□□□□□ -0.49
YBX3-212ENST00000542002 RBM5P52756 815 aaKnown RBP eCLIP12.01□□□□□ -0.49
YBX3-212ENST00000542002 APOBEC3HQ6NTF7 200 aaKnown RBP12.01□□□□□ -0.49
YBX3-212ENST00000542002 SAPCD2Q86UD0 394 aa12.01□□□□□ -0.49
YBX3-212ENST00000542002 WDR66Q8TBY9 1149 aa12.01□□□□□ -0.49
YBX3-212ENST00000542002 MRIQ9BWK5 157 aa12.01□□□□□ -0.49
YBX3-212ENST00000542002 CCDC8Q9H0W5 538 aaPredicted RBP12.01□□□□□ -0.49
YBX3-212ENST00000542002 TDRD3Q9H7E2 651 aaKnown RBP12.01□□□□□ -0.49
YBX3-212ENST00000542002 GNL3LQ9NVN8 582 aaKnown RBP12.01□□□□□ -0.49
YBX3-212ENST00000542002 HMG20BQ9P0W2 317 aa12.01□□□□□ -0.49
YBX3-212ENST00000542002 DENND2AQ9ULE3 1009 aa12.01□□□□□ -0.49
YBX3-212ENST00000542002 ABT1Q9ULW3 272 aaKnown RBP12.01□□□□□ -0.49
YBX3-212ENST00000542002 PCDHB15Q9Y5E8 787 aa12.01□□□□□ -0.49
YBX3-212ENST00000542002 TLL2Q9Y6L7 1015 aa12.01□□□□□ -0.49
YBX3-212ENST00000542002 PITPNM2Q9BZ72 1349 aa12.01□□□□□ -0.49
YBX3-212ENST00000542002 RASSF10A6NK89 507 aa12□□□□□ -0.49
YBX3-212ENST00000542002 SEMA3EO15041 775 aa12□□□□□ -0.49
YBX3-212ENST00000542002 MCAMP43121 646 aa12□□□□□ -0.49
YBX3-212ENST00000542002 DIXDC1Q155Q3 683 aa12□□□□□ -0.49
YBX3-212ENST00000542002 DEFB115Q30KQ5 88 aa12□□□□□ -0.49
YBX3-212ENST00000542002 TBC1D9Q6ZT07 1266 aa12□□□□□ -0.49
YBX3-212ENST00000542002 MOB2Q70IA6 237 aa12□□□□□ -0.49
YBX3-212ENST00000542002 JMYQ8N9B5 988 aa12□□□□□ -0.49
YBX3-212ENST00000542002 RHPN1Q8TCX5 695 aa12□□□□□ -0.49
YBX3-212ENST00000542002 ZNF384Q8TF68 577 aa12□□□□□ -0.49
YBX3-212ENST00000542002 CRBNQ96SW2 442 aa12□□□□□ -0.49
YBX3-212ENST00000542002 DBNLQ9UJU6 430 aaKnown RBP12□□□□□ -0.49
YBX3-212ENST00000542002 CNTNAP1P78357 1384 aa12□□□□□ -0.49
YBX3-212ENST00000542002 APBB1O00213 710 aa11.99□□□□□ -0.49
YBX3-212ENST00000542002 ARID4AP29374 1257 aaPredicted RBP11.99□□□□□ -0.49
YBX3-212ENST00000542002 HDLBPQ00341 1268 aaKnown RBP11.99□□□□□ -0.49
YBX3-212ENST00000542002 GORABQ5T7V8 394 aa11.99□□□□□ -0.49
YBX3-212ENST00000542002 SPATA5Q8NB90 893 aa11.99□□□□□ -0.49
YBX3-212ENST00000542002 ZDHHC15Q96MV8 337 aa11.99□□□□□ -0.49
YBX3-212ENST00000542002 DEFB129Q9H1M3 183 aa11.99□□□□□ -0.49
YBX3-212ENST00000542002 CHMP4BQ9H444 224 aaKnown RBP11.99□□□□□ -0.49
YBX3-212ENST00000542002 IL1RAPL2Q9NP60 686 aa11.99□□□□□ -0.49
YBX3-212ENST00000542002 SNRKQ9NRH2 765 aa11.99□□□□□ -0.49
YBX3-212ENST00000542002 ZNF70Q9UC06 446 aaPredicted RBP11.99□□□□□ -0.49
YBX3-212ENST00000542002 FZD1Q9UP38 647 aa11.99□□□□□ -0.49
YBX3-212ENST00000542002 SUGT1Q9Y2Z0 365 aa11.99□□□□□ -0.49
YBX3-212ENST00000542002 SALL1Q9NSC2 1324 aa11.99□□□□□ -0.49
YBX3-212ENST00000542002 CACNB3P54284 484 aa11.98□□□□□ -0.49
YBX3-212ENST00000542002 SPDYE2Q495Y8 402 aa11.98□□□□□ -0.49
YBX3-212ENST00000542002 CYP4F22Q6NT55 531 aa11.98□□□□□ -0.49
YBX3-212ENST00000542002 HHIPL2Q6UWX4 724 aa11.98□□□□□ -0.49
YBX3-212ENST00000542002 CDAN1Q8IWY9 1227 aa11.98□□□□□ -0.49
YBX3-212ENST00000542002 TEKT1Q969V4 418 aa11.98□□□□□ -0.49
YBX3-212ENST00000542002 GBA2Q9HCG7 927 aaPredicted RBP11.98□□□□□ -0.49
YBX3-212ENST00000542002 POLR2AP24928 1970 aaKnown RBP11.98□□□□□ -0.49
YBX3-212ENST00000542002 PDS5AQ29RF7 1337 aaKnown RBP11.97□□□□□ -0.49
YBX3-212ENST00000542002 HMMRO75330 724 aa11.97□□□□□ -0.49
YBX3-212ENST00000542002 LDHBP07195 334 aaKnown RBP11.97□□□□□ -0.49
YBX3-212ENST00000542002 RASA3Q14644 834 aa11.97□□□□□ -0.49
YBX3-212ENST00000542002 APOBEC3FQ8IUX4 373 aaKnown RBP11.97□□□□□ -0.49
YBX3-212ENST00000542002 ZIC5Q96T25 663 aa11.97□□□□□ -0.49
YBX3-212ENST00000542002 VEZTQ9HBM0 779 aa11.97□□□□□ -0.49
YBX3-212ENST00000542002 ABCF2Q9UG63 623 aa11.97□□□□□ -0.49
YBX3-212ENST00000542002 DAGLAQ9Y4D2 1042 aa11.97□□□□□ -0.49
YBX3-212ENST00000542002 SUPT16HQ9Y5B9 1047 aaKnown RBP11.97□□□□□ -0.49
YBX3-212ENST00000542002 NDUFB9Q9Y6M9 179 aa11.97□□□□□ -0.49
YBX3-212ENST00000542002 WDR33Q9C0J8 1336 aaKnown RBP11.96□□□□□ -0.49
YBX3-212ENST00000542002 TCP10L2B9ZVM9 353 aa11.96□□□□□ -0.49
YBX3-212ENST00000542002 UBE2Q2LH0YL09 131 aa11.96□□□□□ -0.49
YBX3-212ENST00000542002 SMARCA5O60264 1052 aaPredicted RBP11.96□□□□□ -0.49
YBX3-212ENST00000542002 CYP2E1P05181 493 aaPredicted RBP11.96□□□□□ -0.49
YBX3-212ENST00000542002 HUNKP57058 714 aa11.96□□□□□ -0.49
YBX3-212ENST00000542002 MECOMQ03112 1051 aa11.96□□□□□ -0.49
YBX3-212ENST00000542002 NBPF12Q5TAG4 269 aaPredicted RBP11.96□□□□□ -0.49
YBX3-212ENST00000542002 AACSQ86V21 672 aa11.96□□□□□ -0.49
YBX3-212ENST00000542002 ERC1Q8IUD2 1116 aa11.96□□□□□ -0.49
YBX3-212ENST00000542002 C2orf69Q8N8R5 385 aa11.96□□□□□ -0.49
YBX3-212ENST00000542002 ZNF512BQ96KM6 892 aaPredicted RBP11.96□□□□□ -0.49
YBX3-212ENST00000542002 TEPSINQ96N21 525 aa11.96□□□□□ -0.49
YBX3-212ENST00000542002 DCTPP1Q9H773 170 aa11.96□□□□□ -0.49
YBX3-212ENST00000542002 FAM155AB1AL88 458 aaPredicted RBP11.95□□□□□ -0.5
YBX3-212ENST00000542002 MYO1BO43795 1136 aa11.95□□□□□ -0.5
YBX3-212ENST00000542002 AOC2O75106 756 aa11.95□□□□□ -0.5
YBX3-212ENST00000542002 RAB11FIP3O75154 756 aa11.95□□□□□ -0.5
YBX3-212ENST00000542002 UQCRFS1P1P0C7P4 283 aa11.95□□□□□ -0.5
YBX3-212ENST00000542002 ZAP70P43403 619 aa11.95□□□□□ -0.5
YBX3-212ENST00000542002 GRM1Q13255 1194 aa11.95□□□□□ -0.5
YBX3-212ENST00000542002 PRKG1Q13976 671 aa11.95□□□□□ -0.5
YBX3-212ENST00000542002 HSP90AB4PQ58FF6 505 aa11.95□□□□□ -0.5
YBX3-212ENST00000542002 CCDC158Q5M9N0 1113 aa11.95□□□□□ -0.5
YBX3-212ENST00000542002 TTC39AQ5SRH9 613 aa11.95□□□□□ -0.5
YBX3-212ENST00000542002 CDC42EP5Q6NZY7 148 aa11.95□□□□□ -0.5
YBX3-212ENST00000542002 KIF1BPQ96EK5 621 aa11.95□□□□□ -0.5
YBX3-212ENST00000542002 HHIPL1Q96JK4 782 aa11.95□□□□□ -0.5
YBX3-212ENST00000542002 CAPNS2Q96L46 248 aa11.95□□□□□ -0.5
YBX3-212ENST00000542002 TMEM39BQ9GZU3 492 aa11.95□□□□□ -0.5
YBX3-212ENST00000542002 BCL11AQ9H165 835 aa11.95□□□□□ -0.5
YBX3-212ENST00000542002 PIH1D3Q9NQM4 214 aaKnown RBP11.95□□□□□ -0.5
YBX3-212ENST00000542002 NFIAQ12857 509 aa11.94□□□□□ -0.5
YBX3-212ENST00000542002 ERICH6Q7L0X2 663 aa11.94□□□□□ -0.5
YBX3-212ENST00000542002 ZFPM1Q8IX07 1006 aa11.94□□□□□ -0.5
YBX3-212ENST00000542002 NSUN4Q96CB9 384 aaKnown RBP11.94□□□□□ -0.5
YBX3-212ENST00000542002 FAM163AQ96GL9 167 aaPredicted RBP11.94□□□□□ -0.5
YBX3-212ENST00000542002 ANTXR1Q9H6X2 564 aa11.94□□□□□ -0.5
YBX3-212ENST00000542002 USP40Q9NVE5 1235 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms