RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 MBIPQ9NS73 344 aa15.84■□□□□ 0.13
CLSTN3-208ENST00000538933 ARAP2Q8WZ64 1704 aa15.83■□□□□ 0.13
CLSTN3-208ENST00000538933 F8W031 263 aaPredicted RBP15.83■□□□□ 0.12
CLSTN3-208ENST00000538933 ZNF853P0CG23 659 aa15.83■□□□□ 0.12
CLSTN3-208ENST00000538933 IL1R1P14778 569 aa15.83■□□□□ 0.12
CLSTN3-208ENST00000538933 FKBP1AP62942 108 aaKnown RBP15.83■□□□□ 0.12
CLSTN3-208ENST00000538933 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.83■□□□□ 0.12
CLSTN3-208ENST00000538933 GJB1P08034 283 aa15.82■□□□□ 0.12
CLSTN3-208ENST00000538933 MAP3K9P80192 1104 aa15.82■□□□□ 0.12
CLSTN3-208ENST00000538933 SPDYE2Q495Y8 402 aa15.82■□□□□ 0.12
CLSTN3-208ENST00000538933 NKX2-3Q8TAU0 364 aa15.82■□□□□ 0.12
CLSTN3-208ENST00000538933 HTATIP2Q9BUP3 242 aa15.82■□□□□ 0.12
CLSTN3-208ENST00000538933 ZCCHC17Q9NP64 241 aaKnown RBP15.82■□□□□ 0.12
CLSTN3-208ENST00000538933 SPINK5Q9NQ38 1064 aaPredicted RBP15.82■□□□□ 0.12
CLSTN3-208ENST00000538933 MAP3K2Q9Y2U5 619 aa15.82■□□□□ 0.12
CLSTN3-208ENST00000538933 FANCIQ9NVI1 1328 aa15.82■□□□□ 0.12
CLSTN3-208ENST00000538933 SPTBN5Q9NRC6 3674 aaKnown RBP15.82■□□□□ 0.12
CLSTN3-208ENST00000538933 ALPK3Q96L96 1907 aa15.82■□□□□ 0.12
CLSTN3-208ENST00000538933 BTBD19C9JJ37 291 aa15.81■□□□□ 0.12
CLSTN3-208ENST00000538933 H7C1W4 665 aa15.81■□□□□ 0.12
CLSTN3-208ENST00000538933 IGHMBP2P38935 993 aaKnown RBP15.81■□□□□ 0.12
CLSTN3-208ENST00000538933 CHRNDQ07001 517 aa15.81■□□□□ 0.12
CLSTN3-208ENST00000538933 KIF22Q14807 665 aa15.81■□□□□ 0.12
CLSTN3-208ENST00000538933 EYSQ5T1H1 3165 aa15.81■□□□□ 0.12
CLSTN3-208ENST00000538933 C17orf99Q6UX52 265 aa15.81■□□□□ 0.12
CLSTN3-208ENST00000538933 TRIM47Q96LD4 638 aa15.81■□□□□ 0.12
CLSTN3-208ENST00000538933 ZNF70Q9UC06 446 aaPredicted RBP15.81■□□□□ 0.12
CLSTN3-208ENST00000538933 SRRDQ9UH36 339 aa15.81■□□□□ 0.12
CLSTN3-208ENST00000538933 NR2E3Q9Y5X4 410 aa15.81■□□□□ 0.12
CLSTN3-208ENST00000538933 SPDYE5A6NIY4 337 aa15.8■□□□□ 0.12
CLSTN3-208ENST00000538933 CSF1RP07333 972 aa15.8■□□□□ 0.12
CLSTN3-208ENST00000538933 CCL5P13501 91 aa15.8■□□□□ 0.12
CLSTN3-208ENST00000538933 ITGA6P23229 1130 aa15.8■□□□□ 0.12
CLSTN3-208ENST00000538933 ELL2O00472 640 aaPredicted RBP15.79■□□□□ 0.12
CLSTN3-208ENST00000538933 GRK4P32298 578 aa15.79■□□□□ 0.12
CLSTN3-208ENST00000538933 CWF19L2Q2TBE0 894 aaKnown RBP15.79■□□□□ 0.12
CLSTN3-208ENST00000538933 KSR2Q6VAB6 950 aa15.79■□□□□ 0.12
CLSTN3-208ENST00000538933 PLA2G12BQ9BX93 195 aa15.79■□□□□ 0.12
CLSTN3-208ENST00000538933 TDRD3Q9H7E2 651 aaKnown RBP15.79■□□□□ 0.12
CLSTN3-208ENST00000538933 RIPOR2Q9Y4F9 1068 aa15.79■□□□□ 0.12
CLSTN3-208ENST00000538933 MGAMO43451 1857 aa15.79■□□□□ 0.12
CLSTN3-208ENST00000538933 PRUNE2Q8WUY3 3088 aa15.79■□□□□ 0.12
CLSTN3-208ENST00000538933 PI4KAP2A4QPH2 592 aa15.78■□□□□ 0.12
CLSTN3-208ENST00000538933 NEURL1BA8MQ27 555 aa15.78■□□□□ 0.12
CLSTN3-208ENST00000538933 TAF5LO75529 589 aa15.78■□□□□ 0.12
CLSTN3-208ENST00000538933 DDX58O95786 925 aaKnown RBP15.78■□□□□ 0.12
CLSTN3-208ENST00000538933 CETPP11597 493 aa15.78■□□□□ 0.12
CLSTN3-208ENST00000538933 OSBPP22059 807 aa15.78■□□□□ 0.12
CLSTN3-208ENST00000538933 PSMC4P43686 418 aa15.78■□□□□ 0.12
CLSTN3-208ENST00000538933 CASP7P55210 303 aa15.78■□□□□ 0.12
CLSTN3-208ENST00000538933 EXOSC9Q06265 439 aaKnown RBP15.78■□□□□ 0.12
CLSTN3-208ENST00000538933 TNFAIP1Q13829 316 aa15.78■□□□□ 0.12
CLSTN3-208ENST00000538933 PI4KAP1Q8N8J0 262 aa15.78■□□□□ 0.12
CLSTN3-208ENST00000538933 C8orf58Q8NAV2 365 aa15.78■□□□□ 0.12
CLSTN3-208ENST00000538933 MPHOSPH8Q99549 860 aa15.78■□□□□ 0.12
CLSTN3-208ENST00000538933 TMEM39BQ9GZU3 492 aa15.78■□□□□ 0.12
CLSTN3-208ENST00000538933 STAP2Q9UGK3 403 aa15.78■□□□□ 0.12
CLSTN3-208ENST00000538933 JAG2Q9Y219 1238 aa15.78■□□□□ 0.12
CLSTN3-208ENST00000538933 SNCAIPQ9Y6H5 919 aa15.78■□□□□ 0.12
CLSTN3-208ENST00000538933 ADGRA2Q96PE1 1338 aa15.77■□□□□ 0.12
CLSTN3-208ENST00000538933 IRF6O14896 467 aa15.77■□□□□ 0.12
CLSTN3-208ENST00000538933 KCNJ4P48050 445 aa15.77■□□□□ 0.12
CLSTN3-208ENST00000538933 RBM5P52756 815 aaKnown RBP eCLIP15.77■□□□□ 0.12
CLSTN3-208ENST00000538933 GPR153Q6NV75 609 aa15.77■□□□□ 0.12
CLSTN3-208ENST00000538933 UBE3BQ7Z3V4 1068 aa15.77■□□□□ 0.12
CLSTN3-208ENST00000538933 TRMT2AQ8IZ69 625 aaKnown RBP15.77■□□□□ 0.12
CLSTN3-208ENST00000538933 HELBQ8NG08 1087 aaPredicted RBP15.77■□□□□ 0.12
CLSTN3-208ENST00000538933 RNF208Q9H0X6 261 aa15.77■□□□□ 0.12
CLSTN3-208ENST00000538933 CSADQ9Y600 493 aa15.77■□□□□ 0.12
CLSTN3-208ENST00000538933 DNAH12Q6ZR08 3092 aa15.76■□□□□ 0.11
CLSTN3-208ENST00000538933 FAM205AQ6ZU69 1335 aa15.76■□□□□ 0.11
CLSTN3-208ENST00000538933 WDHD1O75717 1129 aaPredicted RBP15.76■□□□□ 0.11
CLSTN3-208ENST00000538933 ECM2O94769 699 aaPredicted RBP15.76■□□□□ 0.11
CLSTN3-208ENST00000538933 FARP2O94887 1054 aaPredicted RBP15.76■□□□□ 0.11
CLSTN3-208ENST00000538933 ERO1BQ86YB8 467 aa15.76■□□□□ 0.11
CLSTN3-208ENST00000538933 DZIP1LQ8IYY4 767 aaKnown RBP15.76■□□□□ 0.11
CLSTN3-208ENST00000538933 U2AF1L4Q8WU68 220 aaKnown RBP15.76■□□□□ 0.11
CLSTN3-208ENST00000538933 CPA4Q9UI42 421 aa15.76■□□□□ 0.11
CLSTN3-208ENST00000538933 SERPINA10Q9UK55 444 aa15.76■□□□□ 0.11
CLSTN3-208ENST00000538933 TCP10L2B9ZVM9 353 aa15.75■□□□□ 0.11
CLSTN3-208ENST00000538933 SNAPC2Q13487 334 aa15.75■□□□□ 0.11
CLSTN3-208ENST00000538933 TWISTNBQ3B726 338 aaPredicted RBP15.75■□□□□ 0.11
CLSTN3-208ENST00000538933 ZNF804AQ7Z570 1209 aa15.75■□□□□ 0.11
CLSTN3-208ENST00000538933 COL25A1Q9BXS0 654 aaPredicted RBP15.75■□□□□ 0.11
CLSTN3-208ENST00000538933 SGPL1O95470 568 aa15.74■□□□□ 0.11
CLSTN3-208ENST00000538933 CT47B1P0C2W7 299 aaPredicted RBP15.74■□□□□ 0.11
CLSTN3-208ENST00000538933 BMP8BP34820 402 aa15.74■□□□□ 0.11
CLSTN3-208ENST00000538933 PPIL2Q13356 520 aa15.74■□□□□ 0.11
CLSTN3-208ENST00000538933 RAET1EQ8TD07 263 aa15.74■□□□□ 0.11
CLSTN3-208ENST00000538933 ZKSCAN4Q969J2 545 aaPredicted RBP15.74■□□□□ 0.11
CLSTN3-208ENST00000538933 GDF15Q99988 308 aa15.74■□□□□ 0.11
CLSTN3-208ENST00000538933 UNC93B1Q9H1C4 597 aa15.74■□□□□ 0.11
CLSTN3-208ENST00000538933 STXBP5LQ9Y2K9 1186 aa15.74■□□□□ 0.11
CLSTN3-208ENST00000538933 MYPNQ86TC9 1320 aa15.73■□□□□ 0.11
CLSTN3-208ENST00000538933 EVI5O60447 810 aa15.73■□□□□ 0.11
CLSTN3-208ENST00000538933 HOXD10P28358 340 aa15.73■□□□□ 0.11
CLSTN3-208ENST00000538933 MOGSQ13724 837 aa15.73■□□□□ 0.11
CLSTN3-208ENST00000538933 GCKRQ14397 625 aa15.73■□□□□ 0.11
CLSTN3-208ENST00000538933 Q7L0L9 218 aa15.73■□□□□ 0.11
CLSTN3-208ENST00000538933 DEFB123Q8N688 67 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms