RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 NOM1Q5C9Z4 860 aaKnown RBP10.63□□□□□ -0.71
USP28-203ENST00000537490 VPS37DQ86XT2 251 aa10.63□□□□□ -0.71
USP28-203ENST00000537490 CDAN1Q8IWY9 1227 aa10.63□□□□□ -0.71
USP28-203ENST00000537490 CFHR5Q9BXR6 569 aa10.63□□□□□ -0.71
USP28-203ENST00000537490 HPS5Q9UPZ3 1129 aa10.63□□□□□ -0.71
USP28-203ENST00000537490 UNCXA6NJT0 531 aa10.62□□□□□ -0.71
USP28-203ENST00000537490 TCP10L2B9ZVM9 353 aa10.62□□□□□ -0.71
USP28-203ENST00000537490 IGF2BP3O00425 579 aaKnown RBP eCLIP10.62□□□□□ -0.71
USP28-203ENST00000537490 FKTNO75072 461 aa10.62□□□□□ -0.71
USP28-203ENST00000537490 ZBTB48P10074 688 aaPredicted RBP10.62□□□□□ -0.71
USP28-203ENST00000537490 FGFR2P21802 821 aa10.62□□□□□ -0.71
USP28-203ENST00000537490 IREB2P48200 963 aaKnown RBP10.62□□□□□ -0.71
USP28-203ENST00000537490 RFX5P48382 616 aaPredicted RBP10.62□□□□□ -0.71
USP28-203ENST00000537490 INHBEP58166 350 aa10.62□□□□□ -0.71
USP28-203ENST00000537490 PKN2Q16513 984 aaKnown RBP10.62□□□□□ -0.71
USP28-203ENST00000537490 CAVIN4Q5BKX8 364 aa10.62□□□□□ -0.71
USP28-203ENST00000537490 IFNL1Q8IU54 200 aa10.62□□□□□ -0.71
USP28-203ENST00000537490 TRMT2AQ8IZ69 625 aaKnown RBP10.62□□□□□ -0.71
USP28-203ENST00000537490 TEPSINQ96N21 525 aa10.62□□□□□ -0.71
USP28-203ENST00000537490 FRAT2O75474 233 aaPredicted RBP10.61□□□□□ -0.71
USP28-203ENST00000537490 ALDH1A1P00352 501 aa10.61□□□□□ -0.71
USP28-203ENST00000537490 TNFAIP1Q13829 316 aa10.61□□□□□ -0.71
USP28-203ENST00000537490 ALDH1L2Q3SY69 923 aa10.61□□□□□ -0.71
USP28-203ENST00000537490 ANKRD13AQ8IZ07 590 aa10.61□□□□□ -0.71
USP28-203ENST00000537490 TMEM39BQ9GZU3 492 aa10.61□□□□□ -0.71
USP28-203ENST00000537490 EYA2O00167 538 aa10.6□□□□□ -0.71
USP28-203ENST00000537490 IFIT1P09914 478 aaKnown RBP10.6□□□□□ -0.71
USP28-203ENST00000537490 CACNB3P54284 484 aa10.6□□□□□ -0.71
USP28-203ENST00000537490 HDLBPQ00341 1268 aaKnown RBP10.6□□□□□ -0.71
USP28-203ENST00000537490 PUM3Q15397 648 aaKnown RBP10.6□□□□□ -0.71
USP28-203ENST00000537490 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.6□□□□□ -0.71
USP28-203ENST00000537490 TBC1D22AQ8WUA7 517 aa10.6□□□□□ -0.71
USP28-203ENST00000537490 PTPN18Q99952 460 aa10.6□□□□□ -0.71
USP28-203ENST00000537490 ELP3Q9H9T3 547 aa10.6□□□□□ -0.71
USP28-203ENST00000537490 SMC4Q9NTJ3 1288 aa10.6□□□□□ -0.71
USP28-203ENST00000537490 TESPA1A2RU30 521 aaPredicted RBP10.59□□□□□ -0.71
USP28-203ENST00000537490 TNNI2P48788 182 aa10.59□□□□□ -0.71
USP28-203ENST00000537490 MAP3K9P80192 1104 aa10.59□□□□□ -0.71
USP28-203ENST00000537490 APOBEC3HQ6NTF7 200 aaKnown RBP10.59□□□□□ -0.71
USP28-203ENST00000537490 FBXO46Q6PJ61 603 aaPredicted RBP10.59□□□□□ -0.71
USP28-203ENST00000537490 ATG9AQ7Z3C6 839 aa10.59□□□□□ -0.71
USP28-203ENST00000537490 TEKT1Q969V4 418 aa10.59□□□□□ -0.71
USP28-203ENST00000537490 OPTNQ96CV9 577 aa10.59□□□□□ -0.71
USP28-203ENST00000537490 MS4A4AQ96JQ5 239 aa10.59□□□□□ -0.71
USP28-203ENST00000537490 MRIQ9BWK5 157 aa10.59□□□□□ -0.71
USP28-203ENST00000537490 RNF39Q9H2S5 420 aa10.59□□□□□ -0.71
USP28-203ENST00000537490 NOB1Q9ULX3 412 aaKnown RBP10.59□□□□□ -0.71
USP28-203ENST00000537490 CRHR2Q13324 411 aa10.58□□□□□ -0.72
USP28-203ENST00000537490 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.58□□□□□ -0.72
USP28-203ENST00000537490 LPIN2Q92539 896 aa10.58□□□□□ -0.72
USP28-203ENST00000537490 ZDHHC15Q96MV8 337 aa10.58□□□□□ -0.72
USP28-203ENST00000537490 SUGT1Q9Y2Z0 365 aa10.58□□□□□ -0.72
USP28-203ENST00000537490 TRIM17Q9Y577 477 aa10.58□□□□□ -0.72
USP28-203ENST00000537490 KIF16BQ96L93 1317 aa10.58□□□□□ -0.72
USP28-203ENST00000537490 UBTFL1P0CB47 393 aaPredicted RBP10.57□□□□□ -0.72
USP28-203ENST00000537490 SLC5A1P13866 664 aa10.57□□□□□ -0.72
USP28-203ENST00000537490 VGLL4Q14135 290 aa10.57□□□□□ -0.72
USP28-203ENST00000537490 OTUD7BQ6GQQ9 843 aa10.57□□□□□ -0.72
USP28-203ENST00000537490 HHIPL2Q6UWX4 724 aa10.57□□□□□ -0.72
USP28-203ENST00000537490 OTOP1Q7RTM1 612 aa10.57□□□□□ -0.72
USP28-203ENST00000537490 BRI3BPQ8WY22 251 aa10.57□□□□□ -0.72
USP28-203ENST00000537490 SIL1Q9H173 461 aa10.57□□□□□ -0.72
USP28-203ENST00000537490 ECM29Q5VYK3 1845 aa10.56□□□□□ -0.72
USP28-203ENST00000537490 CIAO1O76071 339 aa10.56□□□□□ -0.72
USP28-203ENST00000537490 CT47B1P0C2W7 299 aaPredicted RBP10.56□□□□□ -0.72
USP28-203ENST00000537490 CAP1Q01518 475 aa10.56□□□□□ -0.72
USP28-203ENST00000537490 FAM83AQ86UY5 434 aa10.56□□□□□ -0.72
USP28-203ENST00000537490 WDR66Q8TBY9 1149 aa10.56□□□□□ -0.72
USP28-203ENST00000537490 CD99L2Q8TCZ2 262 aa10.56□□□□□ -0.72
USP28-203ENST00000537490 API5Q9BZZ5 524 aaKnown RBP10.56□□□□□ -0.72
USP28-203ENST00000537490 TMOD2Q9NZR1 351 aa10.56□□□□□ -0.72
USP28-203ENST00000537490 CEP126Q9P2H0 1117 aa10.56□□□□□ -0.72
USP28-203ENST00000537490 FBXO3Q9UK99 471 aa10.56□□□□□ -0.72
USP28-203ENST00000537490 PA2G4Q9UQ80 394 aaKnown RBP10.56□□□□□ -0.72
USP28-203ENST00000537490 LRRFIP2Q9Y608 721 aaKnown RBP10.56□□□□□ -0.72
USP28-203ENST00000537490 MAST3O60307 1309 aa10.56□□□□□ -0.72
USP28-203ENST00000537490 CCL15-CCL14A0A0B4J2E2 113 aa10.55□□□□□ -0.72
USP28-203ENST00000537490 GTF2A2P52657 109 aa10.55□□□□□ -0.72
USP28-203ENST00000537490 RARSP54136 660 aaKnown RBP10.55□□□□□ -0.72
USP28-203ENST00000537490 DIXDC1Q155Q3 683 aa10.55□□□□□ -0.72
USP28-203ENST00000537490 CCL15Q16663 113 aa10.55□□□□□ -0.72
USP28-203ENST00000537490 ATP2B3Q16720 1220 aa10.55□□□□□ -0.72
USP28-203ENST00000537490 FKBP1CQ5VVH2 108 aa10.55□□□□□ -0.72
USP28-203ENST00000537490 FAM43AQ8N2R8 423 aa10.55□□□□□ -0.72
USP28-203ENST00000537490 OTUD5Q96G74 571 aa10.55□□□□□ -0.72
USP28-203ENST00000537490 ERO1AQ96HE7 468 aa10.55□□□□□ -0.72
USP28-203ENST00000537490 MEIS3Q99687 375 aa10.55□□□□□ -0.72
USP28-203ENST00000537490 CSADQ9Y600 493 aa10.55□□□□□ -0.72
USP28-203ENST00000537490 SNCAIPQ9Y6H5 919 aa10.55□□□□□ -0.72
USP28-203ENST00000537490 SPDYE5A6NIY4 337 aa10.54□□□□□ -0.72
USP28-203ENST00000537490 SLC34A2O95436 690 aa10.54□□□□□ -0.72
USP28-203ENST00000537490 PRDX5P30044 214 aa10.54□□□□□ -0.72
USP28-203ENST00000537490 IL15P40933 162 aaPredicted RBP10.54□□□□□ -0.72
USP28-203ENST00000537490 PHKA1P46020 1223 aa10.54□□□□□ -0.72
USP28-203ENST00000537490 SP3Q02447 781 aa10.54□□□□□ -0.72
USP28-203ENST00000537490 CDC42EP5Q6NZY7 148 aa10.54□□□□□ -0.72
USP28-203ENST00000537490 MIGA2Q7L4E1 593 aa10.54□□□□□ -0.72
USP28-203ENST00000537490 ZKSCAN4Q969J2 545 aaPredicted RBP10.54□□□□□ -0.72
USP28-203ENST00000537490 WRNIP1Q96S55 665 aa10.54□□□□□ -0.72
USP28-203ENST00000537490 COPRSQ9NQ92 184 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms