RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 MAST3O60307 1309 aa16.4■□□□□ 0.22
RTN3-207ENST00000536011 MANSC4A6NHS7 340 aaPredicted RBP16.39■□□□□ 0.21
RTN3-207ENST00000536011 EYA2O00167 538 aa16.39■□□□□ 0.21
RTN3-207ENST00000536011 ALDH1A1P00352 501 aa16.39■□□□□ 0.21
RTN3-207ENST00000536011 SLC5A1P13866 664 aa16.39■□□□□ 0.21
RTN3-207ENST00000536011 HDLBPQ00341 1268 aaKnown RBP16.39■□□□□ 0.21
RTN3-207ENST00000536011 MKRN3Q13064 507 aaKnown RBP16.39■□□□□ 0.21
RTN3-207ENST00000536011 CHAF1AQ13111 956 aaPredicted RBP16.39■□□□□ 0.21
RTN3-207ENST00000536011 NOM1Q5C9Z4 860 aaKnown RBP16.39■□□□□ 0.21
RTN3-207ENST00000536011 SPRYD7Q5W111 196 aa16.39■□□□□ 0.21
RTN3-207ENST00000536011 CTU1Q7Z7A3 348 aaKnown RBP16.39■□□□□ 0.21
RTN3-207ENST00000536011 DZIP1LQ8IYY4 767 aaKnown RBP16.39■□□□□ 0.21
RTN3-207ENST00000536011 KLHDC4Q8TBB5 520 aa16.39■□□□□ 0.21
RTN3-207ENST00000536011 SUGT1Q9Y2Z0 365 aa16.39■□□□□ 0.21
RTN3-207ENST00000536011 PCDHAC2Q9Y5I4 1007 aa16.39■□□□□ 0.21
RTN3-207ENST00000536011 SSC5DA1L4H1 1573 aa16.38■□□□□ 0.21
RTN3-207ENST00000536011 CRKP46108 304 aa16.38■□□□□ 0.21
RTN3-207ENST00000536011 LPIN2Q92539 896 aa16.38■□□□□ 0.21
RTN3-207ENST00000536011 TEKT1Q969V4 418 aa16.38■□□□□ 0.21
RTN3-207ENST00000536011 ZNF70Q9UC06 446 aaPredicted RBP16.38■□□□□ 0.21
RTN3-207ENST00000536011 NOB1Q9ULX3 412 aaKnown RBP16.38■□□□□ 0.21
RTN3-207ENST00000536011 IQSEC3Q9UPP2 1182 aaPredicted RBP16.38■□□□□ 0.21
RTN3-207ENST00000536011 PKN2Q16513 984 aaKnown RBP16.37■□□□□ 0.21
RTN3-207ENST00000536011 NBPF12Q5TAG4 269 aaPredicted RBP16.37■□□□□ 0.21
RTN3-207ENST00000536011 ANKRD13AQ8IZ07 590 aa16.37■□□□□ 0.21
RTN3-207ENST00000536011 CFHR5Q9BXR6 569 aa16.37■□□□□ 0.21
RTN3-207ENST00000536011 TDRD3Q9H7E2 651 aaKnown RBP16.37■□□□□ 0.21
RTN3-207ENST00000536011 TMOD2Q9NZR1 351 aa16.37■□□□□ 0.21
RTN3-207ENST00000536011 CIAO1O76071 339 aa16.36■□□□□ 0.21
RTN3-207ENST00000536011 FGFR2P21802 821 aa16.36■□□□□ 0.21
RTN3-207ENST00000536011 BCAMP50895 628 aa16.36■□□□□ 0.21
RTN3-207ENST00000536011 MRIQ9BWK5 157 aa16.36■□□□□ 0.21
RTN3-207ENST00000536011 TBC1D8O95759 1140 aa16.35■□□□□ 0.21
RTN3-207ENST00000536011 RFX5P48382 616 aaPredicted RBP16.35■□□□□ 0.21
RTN3-207ENST00000536011 RGS19P49795 217 aa16.35■□□□□ 0.21
RTN3-207ENST00000536011 MLLT1Q03111 559 aaPredicted RBP16.35■□□□□ 0.21
RTN3-207ENST00000536011 OTUD7BQ6GQQ9 843 aa16.35■□□□□ 0.21
RTN3-207ENST00000536011 WDR66Q8TBY9 1149 aa16.35■□□□□ 0.21
RTN3-207ENST00000536011 ARHGAP45Q92619 1136 aa16.35■□□□□ 0.21
RTN3-207ENST00000536011 HOOK2Q96ED9 719 aa16.35■□□□□ 0.21
RTN3-207ENST00000536011 WNK4Q96J92 1243 aa16.35■□□□□ 0.21
RTN3-207ENST00000536011 ZDHHC15Q96MV8 337 aa16.35■□□□□ 0.21
RTN3-207ENST00000536011 GNL3LQ9NVN8 582 aaKnown RBP16.35■□□□□ 0.21
RTN3-207ENST00000536011 CEP126Q9P2H0 1117 aa16.35■□□□□ 0.21
RTN3-207ENST00000536011 TCP10L2B9ZVM9 353 aa16.34■□□□□ 0.21
RTN3-207ENST00000536011 GPR25O00155 361 aa16.34■□□□□ 0.21
RTN3-207ENST00000536011 IPO8O15397 1037 aaKnown RBP16.34■□□□□ 0.21
RTN3-207ENST00000536011 IL15P40933 162 aaPredicted RBP16.34■□□□□ 0.21
RTN3-207ENST00000536011 RARSP54136 660 aaKnown RBP16.34■□□□□ 0.21
RTN3-207ENST00000536011 ZNF296Q8WUU4 475 aaPredicted RBP16.34■□□□□ 0.21
RTN3-207ENST00000536011 CLMNQ96JQ2 1002 aa16.34■□□□□ 0.21
RTN3-207ENST00000536011 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.34■□□□□ 0.21
RTN3-207ENST00000536011 FZD1Q9UP38 647 aa16.34■□□□□ 0.21
RTN3-207ENST00000536011 AOX1Q06278 1338 aa16.34■□□□□ 0.21
RTN3-207ENST00000536011 LAMB1P07942 1786 aa16.33■□□□□ 0.21
RTN3-207ENST00000536011 MYH13Q9UKX3 1938 aa16.33■□□□□ 0.21
RTN3-207ENST00000536011 USP2O75604 605 aaPredicted RBP16.33■□□□□ 0.2
RTN3-207ENST00000536011 GNAI3P08754 354 aa16.33■□□□□ 0.2
RTN3-207ENST00000536011 ATP2B3Q16720 1220 aa16.33■□□□□ 0.2
RTN3-207ENST00000536011 FKBP1CQ5VVH2 108 aa16.33■□□□□ 0.2
RTN3-207ENST00000536011 ATG9AQ7Z3C6 839 aa16.33■□□□□ 0.2
RTN3-207ENST00000536011 IFNL1Q8IU54 200 aa16.33■□□□□ 0.2
RTN3-207ENST00000536011 SIL1Q9H173 461 aa16.33■□□□□ 0.2
RTN3-207ENST00000536011 LRRFIP2Q9Y608 721 aaKnown RBP16.33■□□□□ 0.2
RTN3-207ENST00000536011 FKTNO75072 461 aa16.32■□□□□ 0.2
RTN3-207ENST00000536011 HHIPL2Q6UWX4 724 aa16.32■□□□□ 0.2
RTN3-207ENST00000536011 FAM83AQ86UY5 434 aa16.32■□□□□ 0.2
RTN3-207ENST00000536011 TMEM39BQ9GZU3 492 aa16.32■□□□□ 0.2
RTN3-207ENST00000536011 CSADQ9Y600 493 aa16.32■□□□□ 0.2
RTN3-207ENST00000536011 SEMA3EO15041 775 aa16.31■□□□□ 0.2
RTN3-207ENST00000536011 GRIK5Q16478 980 aa16.31■□□□□ 0.2
RTN3-207ENST00000536011 INTS3Q68E01 1043 aaKnown RBP16.31■□□□□ 0.2
RTN3-207ENST00000536011 TEPSINQ96N21 525 aa16.31■□□□□ 0.2
RTN3-207ENST00000536011 RPAP1Q9BWH6 1393 aaPredicted RBP16.3■□□□□ 0.2
RTN3-207ENST00000536011 OTOFQ9HC10 1997 aa16.3■□□□□ 0.2
RTN3-207ENST00000536011 ZGPATQ8N5A5 531 aaKnown RBP16.3■□□□□ 0.2
RTN3-207ENST00000536011 OPTNQ96CV9 577 aa16.3■□□□□ 0.2
RTN3-207ENST00000536011 MEIS3Q99687 375 aa16.3■□□□□ 0.2
RTN3-207ENST00000536011 ELP3Q9H9T3 547 aa16.3■□□□□ 0.2
RTN3-207ENST00000536011 COPRSQ9NQ92 184 aa16.3■□□□□ 0.2
RTN3-207ENST00000536011 DENND2AQ9ULE3 1009 aa16.3■□□□□ 0.2
RTN3-207ENST00000536011 MAP3K9P80192 1104 aa16.29■□□□□ 0.2
RTN3-207ENST00000536011 DCAF15Q66K64 600 aa16.29■□□□□ 0.2
RTN3-207ENST00000536011 APOBEC3HQ6NTF7 200 aaKnown RBP16.29■□□□□ 0.2
RTN3-207ENST00000536011 SALL1Q9NSC2 1324 aa16.28■□□□□ 0.2
RTN3-207ENST00000536011 IGF2BP3O00425 579 aaKnown RBP eCLIP16.28■□□□□ 0.2
RTN3-207ENST00000536011 SRGAP3O43295 1099 aa16.28■□□□□ 0.2
RTN3-207ENST00000536011 WDHD1O75717 1129 aaPredicted RBP16.28■□□□□ 0.2
RTN3-207ENST00000536011 LDHBP07195 334 aaKnown RBP16.28■□□□□ 0.2
RTN3-207ENST00000536011 CACNB3P54284 484 aa16.28■□□□□ 0.2
RTN3-207ENST00000536011 VGLL4Q14135 290 aa16.28■□□□□ 0.2
RTN3-207ENST00000536011 FBXO46Q6PJ61 603 aaPredicted RBP16.28■□□□□ 0.2
RTN3-207ENST00000536011 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.28■□□□□ 0.2
RTN3-207ENST00000536011 HPS5Q9UPZ3 1129 aa16.28■□□□□ 0.2
RTN3-207ENST00000536011 AKAP2Q9Y2D5 859 aa16.28■□□□□ 0.2
RTN3-207ENST00000536011 TESPA1A2RU30 521 aaPredicted RBP16.27■□□□□ 0.2
RTN3-207ENST00000536011 GTF2A2P52657 109 aa16.27■□□□□ 0.2
RTN3-207ENST00000536011 MTX1Q13505 466 aa16.27■□□□□ 0.2
RTN3-207ENST00000536011 ATF7IPQ6VMQ6 1270 aa16.27■□□□□ 0.2
RTN3-207ENST00000536011 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms