RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 FBXO3Q9UK99 471 aa14.16□□□□□ -0.14
CLSTN3-206ENST00000535668 RPAP1Q9BWH6 1393 aaPredicted RBP14.16□□□□□ -0.14
CLSTN3-206ENST00000535668 RBBP6Q7Z6E9 1792 aaKnown RBP14.16□□□□□ -0.14
CLSTN3-206ENST00000535668 CEP290O15078 2479 aa14.15□□□□□ -0.14
CLSTN3-206ENST00000535668 FGFR2P21802 821 aa14.15□□□□□ -0.14
CLSTN3-206ENST00000535668 HHIPL2Q6UWX4 724 aa14.15□□□□□ -0.14
CLSTN3-206ENST00000535668 ANKRD44Q8N8A2 993 aa14.15□□□□□ -0.14
CLSTN3-206ENST00000535668 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.15□□□□□ -0.14
CLSTN3-206ENST00000535668 ERO1AQ96HE7 468 aa14.15□□□□□ -0.14
CLSTN3-206ENST00000535668 ZDHHC15Q96MV8 337 aa14.15□□□□□ -0.14
CLSTN3-206ENST00000535668 TTF2Q9UNY4 1162 aaKnown RBP14.15□□□□□ -0.14
CLSTN3-206ENST00000535668 CLRN2A0PK11 232 aa14.14□□□□□ -0.15
CLSTN3-206ENST00000535668 TAF7LQ5H9L4 462 aa14.14□□□□□ -0.15
CLSTN3-206ENST00000535668 MRPL50Q8N5N7 158 aaKnown RBP14.14□□□□□ -0.15
CLSTN3-206ENST00000535668 PUS3Q9BZE2 481 aaKnown RBP14.14□□□□□ -0.15
CLSTN3-206ENST00000535668 USP44Q9H0E7 712 aa14.14□□□□□ -0.15
CLSTN3-206ENST00000535668 CRKP46108 304 aa14.13□□□□□ -0.15
CLSTN3-206ENST00000535668 GYG1P46976 350 aa14.13□□□□□ -0.15
CLSTN3-206ENST00000535668 TNNI2P48788 182 aa14.13□□□□□ -0.15
CLSTN3-206ENST00000535668 MAP3K9P80192 1104 aa14.13□□□□□ -0.15
CLSTN3-206ENST00000535668 CRHR2Q13324 411 aa14.13□□□□□ -0.15
CLSTN3-206ENST00000535668 HOOK2Q96ED9 719 aa14.13□□□□□ -0.15
CLSTN3-206ENST00000535668 BICC1Q9H694 974 aaKnown RBP14.13□□□□□ -0.15
CLSTN3-206ENST00000535668 PTPN22Q9Y2R2 807 aa14.13□□□□□ -0.15
CLSTN3-206ENST00000535668 CHMP3Q9Y3E7 222 aa14.13□□□□□ -0.15
CLSTN3-206ENST00000535668 OTOFQ9HC10 1997 aa14.13□□□□□ -0.15
CLSTN3-206ENST00000535668 ZNF316A6NFI3 1004 aaPredicted RBP14.12□□□□□ -0.15
CLSTN3-206ENST00000535668 SPDYE5A6NIY4 337 aa14.12□□□□□ -0.15
CLSTN3-206ENST00000535668 GTF2A2P52657 109 aa14.12□□□□□ -0.15
CLSTN3-206ENST00000535668 PRKG1Q13976 671 aa14.12□□□□□ -0.15
CLSTN3-206ENST00000535668 CAVIN4Q5BKX8 364 aa14.12□□□□□ -0.15
CLSTN3-206ENST00000535668 APOBEC3HQ6NTF7 200 aaKnown RBP14.12□□□□□ -0.15
CLSTN3-206ENST00000535668 TRMT2AQ8IZ69 625 aaKnown RBP14.12□□□□□ -0.15
CLSTN3-206ENST00000535668 FZD1Q9UP38 647 aa14.12□□□□□ -0.15
CLSTN3-206ENST00000535668 MAST3O60307 1309 aa14.12□□□□□ -0.15
CLSTN3-206ENST00000535668 E9PSI1 815 aa14.11□□□□□ -0.15
CLSTN3-206ENST00000535668 F8W031 263 aaPredicted RBP14.11□□□□□ -0.15
CLSTN3-206ENST00000535668 GNRH1P01148 92 aa14.11□□□□□ -0.15
CLSTN3-206ENST00000535668 CT47B1P0C2W7 299 aaPredicted RBP14.11□□□□□ -0.15
CLSTN3-206ENST00000535668 RFX5P48382 616 aaPredicted RBP14.11□□□□□ -0.15
CLSTN3-206ENST00000535668 SP3Q02447 781 aa14.11□□□□□ -0.15
CLSTN3-206ENST00000535668 MKRN3Q13064 507 aaKnown RBP14.11□□□□□ -0.15
CLSTN3-206ENST00000535668 ALDH1L2Q3SY69 923 aa14.11□□□□□ -0.15
CLSTN3-206ENST00000535668 TEKT1Q969V4 418 aa14.11□□□□□ -0.15
CLSTN3-206ENST00000535668 OPTNQ96CV9 577 aa14.11□□□□□ -0.15
CLSTN3-206ENST00000535668 TDRD3Q9H7E2 651 aaKnown RBP14.11□□□□□ -0.15
CLSTN3-206ENST00000535668 VEZTQ9HBM0 779 aa14.11□□□□□ -0.15
CLSTN3-206ENST00000535668 RBM5P52756 815 aaKnown RBP eCLIP14.1□□□□□ -0.15
CLSTN3-206ENST00000535668 VGLL4Q14135 290 aa14.1□□□□□ -0.15
CLSTN3-206ENST00000535668 ARHGEF6Q15052 776 aa14.1□□□□□ -0.15
CLSTN3-206ENST00000535668 PUM3Q15397 648 aaKnown RBP14.1□□□□□ -0.15
CLSTN3-206ENST00000535668 LRRC24Q50LG9 513 aa14.1□□□□□ -0.15
CLSTN3-206ENST00000535668 ERO1BQ86YB8 467 aa14.1□□□□□ -0.15
CLSTN3-206ENST00000535668 BRI3BPQ8WY22 251 aa14.1□□□□□ -0.15
CLSTN3-206ENST00000535668 ZNF112Q9UJU3 913 aa14.1□□□□□ -0.15
CLSTN3-206ENST00000535668 TRIM17Q9Y577 477 aa14.1□□□□□ -0.15
CLSTN3-206ENST00000535668 PLIN1O60240 522 aa14.09□□□□□ -0.15
CLSTN3-206ENST00000535668 GRIK5Q16478 980 aa14.09□□□□□ -0.15
CLSTN3-206ENST00000535668 SLC4A10Q6U841 1118 aa14.09□□□□□ -0.15
CLSTN3-206ENST00000535668 LPIN2Q92539 896 aa14.09□□□□□ -0.15
CLSTN3-206ENST00000535668 GCC1Q96CN9 775 aa14.09□□□□□ -0.15
CLSTN3-206ENST00000535668 TMEM39BQ9GZU3 492 aa14.09□□□□□ -0.15
CLSTN3-206ENST00000535668 EFCC1Q9HA90 598 aa14.09□□□□□ -0.15
CLSTN3-206ENST00000535668 SALL1Q9NSC2 1324 aa14.09□□□□□ -0.15
CLSTN3-206ENST00000535668 EYA2O00167 538 aa14.08□□□□□ -0.16
CLSTN3-206ENST00000535668 CIAO1O76071 339 aa14.08□□□□□ -0.16
CLSTN3-206ENST00000535668 CAP1Q01518 475 aa14.08□□□□□ -0.16
CLSTN3-206ENST00000535668 SLFN5Q08AF3 891 aa14.08□□□□□ -0.16
CLSTN3-206ENST00000535668 METTL24Q5JXM2 366 aa14.08□□□□□ -0.16
CLSTN3-206ENST00000535668 VPS37DQ86XT2 251 aa14.08□□□□□ -0.16
CLSTN3-206ENST00000535668 CDAN1Q8IWY9 1227 aa14.08□□□□□ -0.16
CLSTN3-206ENST00000535668 WDR66Q8TBY9 1149 aa14.08□□□□□ -0.16
CLSTN3-206ENST00000535668 SSH1Q8WYL5 1049 aa14.08□□□□□ -0.16
CLSTN3-206ENST00000535668 ZNF333Q96JL9 665 aa14.08□□□□□ -0.16
CLSTN3-206ENST00000535668 ZFYVE28Q9HCC9 887 aa14.08□□□□□ -0.16
CLSTN3-206ENST00000535668 SNCAIPQ9Y6H5 919 aa14.08□□□□□ -0.16
CLSTN3-206ENST00000535668 SEMA3EO15041 775 aa14.07□□□□□ -0.16
CLSTN3-206ENST00000535668 TLR2O60603 784 aa14.07□□□□□ -0.16
CLSTN3-206ENST00000535668 IFIT1P09914 478 aaKnown RBP14.07□□□□□ -0.16
CLSTN3-206ENST00000535668 CETPP11597 493 aa14.07□□□□□ -0.16
CLSTN3-206ENST00000535668 BCAMP50895 628 aa14.07□□□□□ -0.16
CLSTN3-206ENST00000535668 PRMT2P55345 433 aa14.07□□□□□ -0.16
CLSTN3-206ENST00000535668 MAP3K10Q02779 954 aa14.07□□□□□ -0.16
CLSTN3-206ENST00000535668 PPATQ06203 517 aa14.07□□□□□ -0.16
CLSTN3-206ENST00000535668 PPIL2Q13356 520 aa14.07□□□□□ -0.16
CLSTN3-206ENST00000535668 ATG9AQ7Z3C6 839 aa14.07□□□□□ -0.16
CLSTN3-206ENST00000535668 ELP3Q9H9T3 547 aa14.07□□□□□ -0.16
CLSTN3-206ENST00000535668 KCNH4Q9UQ05 1017 aa14.07□□□□□ -0.16
CLSTN3-206ENST00000535668 JAG2Q9Y219 1238 aa14.07□□□□□ -0.16
CLSTN3-206ENST00000535668 SALL2Q9Y467 1007 aaPredicted RBP14.07□□□□□ -0.16
CLSTN3-206ENST00000535668 CSADQ9Y600 493 aa14.07□□□□□ -0.16
CLSTN3-206ENST00000535668 PDS5AQ29RF7 1337 aaKnown RBP14.07□□□□□ -0.16
CLSTN3-206ENST00000535668 CCL15-CCL14A0A0B4J2E2 113 aa14.06□□□□□ -0.16
CLSTN3-206ENST00000535668 CCL15Q16663 113 aa14.06□□□□□ -0.16
CLSTN3-206ENST00000535668 DCAF15Q66K64 600 aa14.06□□□□□ -0.16
CLSTN3-206ENST00000535668 FAM43AQ8N2R8 423 aa14.06□□□□□ -0.16
CLSTN3-206ENST00000535668 FAM151AQ8WW52 585 aa14.06□□□□□ -0.16
CLSTN3-206ENST00000535668 HDAC5Q9UQL6 1122 aa14.06□□□□□ -0.16
CLSTN3-206ENST00000535668 TCP10L2B9ZVM9 353 aa14.05□□□□□ -0.16
CLSTN3-206ENST00000535668 SNAPC2Q13487 334 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms