RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 FAM89AQ96GI7 184 aa8.52□□□□□ -1.05
CD44-237ENST00000534082 DEFB129Q9H1M3 183 aa8.52□□□□□ -1.05
CD44-237ENST00000534082 PRUNE2Q8WUY3 3088 aa8.51□□□□□ -1.05
CD44-237ENST00000534082 CCL5P13501 91 aa8.51□□□□□ -1.05
CD44-237ENST00000534082 COL9A1P20849 921 aa8.51□□□□□ -1.05
CD44-237ENST00000534082 PRMT2P55345 433 aa8.51□□□□□ -1.05
CD44-237ENST00000534082 EIF4G2P78344 907 aaKnown RBP eCLIP8.51□□□□□ -1.05
CD44-237ENST00000534082 LACTBP83111 547 aaPredicted RBP8.51□□□□□ -1.05
CD44-237ENST00000534082 AIMP1Q12904 312 aaKnown RBP8.51□□□□□ -1.05
CD44-237ENST00000534082 KIF22Q14807 665 aa8.51□□□□□ -1.05
CD44-237ENST00000534082 BRI3BPQ8WY22 251 aa8.51□□□□□ -1.05
CD44-237ENST00000534082 OPTNQ96CV9 577 aa8.51□□□□□ -1.05
CD44-237ENST00000534082 PPP2R3BQ9Y5P8 575 aa8.51□□□□□ -1.05
CD44-237ENST00000534082 OTOFQ9HC10 1997 aa8.51□□□□□ -1.05
CD44-237ENST00000534082 XDHP47989 1333 aa8.51□□□□□ -1.05
CD44-237ENST00000534082 RPTORQ8N122 1335 aa8.51□□□□□ -1.05
CD44-237ENST00000534082 MED23Q9ULK4 1368 aa8.5□□□□□ -1.05
CD44-237ENST00000534082 CCL15-CCL14A0A0B4J2E2 113 aa8.5□□□□□ -1.05
CD44-237ENST00000534082 GNRH1P01148 92 aa8.5□□□□□ -1.05
CD44-237ENST00000534082 U2AF1L5P0DN76 240 aaPredicted RBP8.5□□□□□ -1.05
CD44-237ENST00000534082 EIF2S2P20042 333 aaKnown RBP8.5□□□□□ -1.05
CD44-237ENST00000534082 IREB2P48200 963 aaKnown RBP8.5□□□□□ -1.05
CD44-237ENST00000534082 U2AF1Q01081 240 aaKnown RBP eCLIP8.5□□□□□ -1.05
CD44-237ENST00000534082 CCL15Q16663 113 aa8.5□□□□□ -1.05
CD44-237ENST00000534082 LRIT3Q3SXY7 679 aa8.5□□□□□ -1.05
CD44-237ENST00000534082 RTL5Q5HYW3 569 aaPredicted RBP8.5□□□□□ -1.05
CD44-237ENST00000534082 COPS6Q7L5N1 327 aa8.5□□□□□ -1.05
CD44-237ENST00000534082 ANKRD13AQ8IZ07 590 aa8.5□□□□□ -1.05
CD44-237ENST00000534082 XAGE3Q8WTP9 111 aa8.5□□□□□ -1.05
CD44-237ENST00000534082 ZBED3Q96IU2 234 aaPredicted RBP8.5□□□□□ -1.05
CD44-237ENST00000534082 GDF15Q99988 308 aa8.5□□□□□ -1.05
CD44-237ENST00000534082 RNF208Q9H0X6 261 aa8.5□□□□□ -1.05
CD44-237ENST00000534082 ELP3Q9H9T3 547 aa8.5□□□□□ -1.05
CD44-237ENST00000534082 SEC31BQ9NQW1 1179 aa8.5□□□□□ -1.05
CD44-237ENST00000534082 CDH23Q9H251 3354 aa8.5□□□□□ -1.05
CD44-237ENST00000534082 LAMA2P24043 3122 aaKnown RBP8.49□□□□□ -1.05
CD44-237ENST00000534082 IRS4O14654 1257 aaPredicted RBP8.49□□□□□ -1.05
CD44-237ENST00000534082 TBC1D12O60347 775 aa8.49□□□□□ -1.05
CD44-237ENST00000534082 PDE4AP27815 886 aa8.49□□□□□ -1.05
CD44-237ENST00000534082 GRK4P32298 578 aa8.49□□□□□ -1.05
CD44-237ENST00000534082 BMP8BP34820 402 aa8.49□□□□□ -1.05
CD44-237ENST00000534082 MMP14P50281 582 aa8.49□□□□□ -1.05
CD44-237ENST00000534082 BCAMP50895 628 aa8.49□□□□□ -1.05
CD44-237ENST00000534082 SUPT20HL1Q3ZLR7 823 aa8.49□□□□□ -1.05
CD44-237ENST00000534082 PPP1R15BQ5SWA1 713 aa8.49□□□□□ -1.05
CD44-237ENST00000534082 STRIP1Q5VSL9 837 aa8.49□□□□□ -1.05
CD44-237ENST00000534082 KIAA0825Q8IV33 1275 aa8.49□□□□□ -1.05
CD44-237ENST00000534082 FAM43AQ8N2R8 423 aa8.49□□□□□ -1.05
CD44-237ENST00000534082 U2AF1L4Q8WU68 220 aaKnown RBP8.49□□□□□ -1.05
CD44-237ENST00000534082 RIPOR2Q9Y4F9 1068 aa8.49□□□□□ -1.05
CD44-237ENST00000534082 ZNF804BA4D1E1 1349 aa8.49□□□□□ -1.05
CD44-237ENST00000534082 TLR2O60603 784 aa8.48□□□□□ -1.05
CD44-237ENST00000534082 USP2O75604 605 aaPredicted RBP8.48□□□□□ -1.05
CD44-237ENST00000534082 WDHD1O75717 1129 aaPredicted RBP8.48□□□□□ -1.05
CD44-237ENST00000534082 ATP2B4P23634 1241 aa8.48□□□□□ -1.05
CD44-237ENST00000534082 CNGB1Q14028 1251 aaPredicted RBP8.48□□□□□ -1.05
CD44-237ENST00000534082 NBPF12Q5TAG4 269 aaPredicted RBP8.48□□□□□ -1.05
CD44-237ENST00000534082 TDHQ8IZJ6 230 aa8.48□□□□□ -1.05
CD44-237ENST00000534082 RAET1EQ8TD07 263 aa8.48□□□□□ -1.05
CD44-237ENST00000534082 PTCD2Q8WV60 388 aaKnown RBP8.48□□□□□ -1.05
CD44-237ENST00000534082 CFAP53Q96M91 514 aa8.48□□□□□ -1.05
CD44-237ENST00000534082 CRISPLD2Q9H0B8 497 aa8.48□□□□□ -1.05
CD44-237ENST00000534082 SRRDQ9UH36 339 aa8.48□□□□□ -1.05
CD44-237ENST00000534082 NUDCQ9Y266 331 aa8.48□□□□□ -1.05
CD44-237ENST00000534082 CLRN2A0PK11 232 aa8.47□□□□□ -1.05
CD44-237ENST00000534082 ATP5J2-PTCD1G3V325 749 aa8.47□□□□□ -1.05
CD44-237ENST00000534082 PER1O15534 1290 aaPredicted RBP8.47□□□□□ -1.05
CD44-237ENST00000534082 CTGFP29279 349 aa8.47□□□□□ -1.05
CD44-237ENST00000534082 PLA2G5P39877 138 aa8.47□□□□□ -1.05
CD44-237ENST00000534082 GTF2A2P52657 109 aa8.47□□□□□ -1.05
CD44-237ENST00000534082 UBXN2AP68543 259 aa8.47□□□□□ -1.05
CD44-237ENST00000534082 DLGAP5Q15398 846 aa8.47□□□□□ -1.05
CD44-237ENST00000534082 TRIM47Q96LD4 638 aa8.47□□□□□ -1.05
CD44-237ENST00000534082 GUCD1Q96NT3 240 aa8.47□□□□□ -1.05
CD44-237ENST00000534082 ISCA1Q9BUE6 129 aa8.47□□□□□ -1.05
CD44-237ENST00000534082 BIN2Q9UBW5 565 aaPredicted RBP8.47□□□□□ -1.05
CD44-237ENST00000534082 RAPGEFL1Q9UHV5 662 aa8.47□□□□□ -1.05
CD44-237ENST00000534082 ZMYND8Q9ULU4 1186 aaPredicted RBP8.47□□□□□ -1.05
CD44-237ENST00000534082 MYPNQ86TC9 1320 aa8.47□□□□□ -1.05
CD44-237ENST00000534082 IRS2Q9Y4H2 1338 aa8.47□□□□□ -1.05
CD44-237ENST00000534082 ALPK3Q96L96 1907 aa8.46□□□□□ -1.05
CD44-237ENST00000534082 ECM29Q5VYK3 1845 aa8.46□□□□□ -1.06
CD44-237ENST00000534082 SGPL1O95470 568 aa8.46□□□□□ -1.06
CD44-237ENST00000534082 OSBPP22059 807 aa8.46□□□□□ -1.06
CD44-237ENST00000534082 PSMC4P43686 418 aa8.46□□□□□ -1.06
CD44-237ENST00000534082 C7orf61Q8IZ16 206 aa8.46□□□□□ -1.06
CD44-237ENST00000534082 LARP6Q9BRS8 491 aaKnown RBP8.46□□□□□ -1.06
CD44-237ENST00000534082 COA1Q9GZY4 146 aa8.46□□□□□ -1.06
CD44-237ENST00000534082 UNC93B1Q9H1C4 597 aa8.46□□□□□ -1.06
CD44-237ENST00000534082 VEZTQ9HBM0 779 aa8.46□□□□□ -1.06
CD44-237ENST00000534082 RTN4Q9NQC3 1192 aaKnown RBP8.46□□□□□ -1.06
CD44-237ENST00000534082 TSPYL4Q9UJ04 414 aa8.46□□□□□ -1.06
CD44-237ENST00000534082 DLG5Q8TDM6 1919 aa8.46□□□□□ -1.06
CD44-237ENST00000534082 HOXD10P28358 340 aa8.45□□□□□ -1.06
CD44-237ENST00000534082 MAGEA10P43363 369 aaPredicted RBP8.45□□□□□ -1.06
CD44-237ENST00000534082 VGLL4Q14135 290 aa8.45□□□□□ -1.06
CD44-237ENST00000534082 CCDC152Q4G0S7 254 aa8.45□□□□□ -1.06
CD44-237ENST00000534082 TTLL5Q6EMB2 1281 aa8.45□□□□□ -1.06
CD44-237ENST00000534082 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.45□□□□□ -1.06
CD44-237ENST00000534082 ANKRD18AQ8IVF6 992 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms