RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 ZNF384Q8TF68 577 aa13.26□□□□□ -0.29
CD44-227ENST00000528086 CASP8AP2Q9UKL3 1982 aa13.25□□□□□ -0.29
CD44-227ENST00000528086 MYH2Q9UKX2 1941 aa13.25□□□□□ -0.29
CD44-227ENST00000528086 A0A1B0GUL7 405 aa13.25□□□□□ -0.29
CD44-227ENST00000528086 SLC10A3P09131 477 aa13.25□□□□□ -0.29
CD44-227ENST00000528086 PRDX5P30044 214 aa13.25□□□□□ -0.29
CD44-227ENST00000528086 LDLRAD1Q5T700 205 aa13.25□□□□□ -0.29
CD44-227ENST00000528086 NBPF12Q5TAG4 269 aaPredicted RBP13.25□□□□□ -0.29
CD44-227ENST00000528086 VPS37DQ86XT2 251 aa13.25□□□□□ -0.29
CD44-227ENST00000528086 APOBEC3FQ8IUX4 373 aaKnown RBP13.25□□□□□ -0.29
CD44-227ENST00000528086 ITPRIPQ8IWB1 547 aa13.25□□□□□ -0.29
CD44-227ENST00000528086 XAGE2Q96GT9 111 aa13.25□□□□□ -0.29
CD44-227ENST00000528086 TSKSQ9UJT2 592 aa13.25□□□□□ -0.29
CD44-227ENST00000528086 HDAC5Q9UQL6 1122 aa13.25□□□□□ -0.29
CD44-227ENST00000528086 LAMB1P07942 1786 aa13.25□□□□□ -0.29
CD44-227ENST00000528086 LBX1P52954 281 aa13.24□□□□□ -0.29
CD44-227ENST00000528086 CACNB3P54284 484 aa13.24□□□□□ -0.29
CD44-227ENST00000528086 HDLBPQ00341 1268 aaKnown RBP13.24□□□□□ -0.29
CD44-227ENST00000528086 RASGRF1Q13972 1273 aa13.24□□□□□ -0.29
CD44-227ENST00000528086 RASA3Q14644 834 aa13.24□□□□□ -0.29
CD44-227ENST00000528086 CEP85Q6P2H3 762 aa13.24□□□□□ -0.29
CD44-227ENST00000528086 PI16Q6UXB8 463 aa13.24□□□□□ -0.29
CD44-227ENST00000528086 SIRT2Q8IXJ6 389 aa13.24□□□□□ -0.29
CD44-227ENST00000528086 ZDHHC15Q96MV8 337 aa13.24□□□□□ -0.29
CD44-227ENST00000528086 MRIQ9BWK5 157 aa13.24□□□□□ -0.29
CD44-227ENST00000528086 RCAN3Q9UKA8 241 aa13.24□□□□□ -0.29
CD44-227ENST00000528086 NOP58Q9Y2X3 529 aaKnown RBP13.24□□□□□ -0.29
CD44-227ENST00000528086 ZNF157P51786 506 aaPredicted RBP13.23□□□□□ -0.29
CD44-227ENST00000528086 FKBP1BP68106 108 aa13.23□□□□□ -0.29
CD44-227ENST00000528086 KIF23Q02241 960 aaPredicted RBP13.23□□□□□ -0.29
CD44-227ENST00000528086 PRKG1Q13976 671 aa13.23□□□□□ -0.29
CD44-227ENST00000528086 DIXDC1Q155Q3 683 aa13.23□□□□□ -0.29
CD44-227ENST00000528086 MAP3K11Q16584 847 aa13.23□□□□□ -0.29
CD44-227ENST00000528086 TBC1D22AQ8WUA7 517 aa13.23□□□□□ -0.29
CD44-227ENST00000528086 CSRNP1Q96S65 589 aa13.23□□□□□ -0.29
CD44-227ENST00000528086 VEZTQ9HBM0 779 aa13.23□□□□□ -0.29
CD44-227ENST00000528086 SALL1Q9NSC2 1324 aa13.22□□□□□ -0.29
CD44-227ENST00000528086 USP2O75604 605 aaPredicted RBP13.22□□□□□ -0.29
CD44-227ENST00000528086 CTCFP49711 727 aaPredicted RBP13.22□□□□□ -0.29
CD44-227ENST00000528086 RBM5P52756 815 aaKnown RBP eCLIP13.22□□□□□ -0.29
CD44-227ENST00000528086 MAP2K1Q02750 393 aaPredicted RBP13.22□□□□□ -0.29
CD44-227ENST00000528086 NOGQ13253 232 aa13.22□□□□□ -0.29
CD44-227ENST00000528086 FTSJ3Q8IY81 847 aaKnown RBP13.22□□□□□ -0.29
CD44-227ENST00000528086 CLMNQ96JQ2 1002 aa13.22□□□□□ -0.29
CD44-227ENST00000528086 TMEM39BQ9GZU3 492 aa13.22□□□□□ -0.29
CD44-227ENST00000528086 ZBTB40Q9NUA8 1239 aa13.22□□□□□ -0.29
CD44-227ENST00000528086 COG6Q9Y2V7 657 aa13.22□□□□□ -0.29
CD44-227ENST00000528086 SUGT1Q9Y2Z0 365 aa13.22□□□□□ -0.29
CD44-227ENST00000528086 DAGLAQ9Y4D2 1042 aa13.22□□□□□ -0.29
CD44-227ENST00000528086 TCP10L2B9ZVM9 353 aa13.21□□□□□ -0.29
CD44-227ENST00000528086 FRAT2O75474 233 aaPredicted RBP13.21□□□□□ -0.29
CD44-227ENST00000528086 GJA5P36382 358 aa13.21□□□□□ -0.29
CD44-227ENST00000528086 IFFO2Q5TF58 517 aa13.21□□□□□ -0.29
CD44-227ENST00000528086 HHIPL2Q6UWX4 724 aa13.21□□□□□ -0.29
CD44-227ENST00000528086 WDR66Q8TBY9 1149 aa13.21□□□□□ -0.29
CD44-227ENST00000528086 PRDM10Q9NQV6 1147 aa13.21□□□□□ -0.29
CD44-227ENST00000528086 HMG20BQ9P0W2 317 aa13.21□□□□□ -0.29
CD44-227ENST00000528086 PDS5AQ29RF7 1337 aaKnown RBP13.2□□□□□ -0.3
CD44-227ENST00000528086 SEMA3EO15041 775 aa13.2□□□□□ -0.3
CD44-227ENST00000528086 ARID4AP29374 1257 aaPredicted RBP13.2□□□□□ -0.3
CD44-227ENST00000528086 MCAMP43121 646 aa13.2□□□□□ -0.3
CD44-227ENST00000528086 MVPQ14764 893 aaKnown RBP13.2□□□□□ -0.3
CD44-227ENST00000528086 CDC42EP5Q6NZY7 148 aa13.2□□□□□ -0.3
CD44-227ENST00000528086 ZFPM1Q8IX07 1006 aa13.2□□□□□ -0.3
CD44-227ENST00000528086 TEKT1Q969V4 418 aa13.2□□□□□ -0.3
CD44-227ENST00000528086 CCDC102AQ96A19 550 aa13.2□□□□□ -0.3
CD44-227ENST00000528086 DBNDD2Q9BQY9 259 aa13.2□□□□□ -0.3
CD44-227ENST00000528086 TLR7Q9NYK1 1049 aaKnown RBP13.2□□□□□ -0.3
CD44-227ENST00000528086 DENND2AQ9ULE3 1009 aa13.2□□□□□ -0.3
CD44-227ENST00000528086 ANGEL1Q9UNK9 670 aaKnown RBP13.2□□□□□ -0.3
CD44-227ENST00000528086 PPP2R3BQ9Y5P8 575 aa13.2□□□□□ -0.3
CD44-227ENST00000528086 RFX7Q2KHR2 1363 aa13.2□□□□□ -0.3
CD44-227ENST00000528086 GAKO14976 1311 aa13.19□□□□□ -0.3
CD44-227ENST00000528086 SURF6O75683 361 aaKnown RBP13.19□□□□□ -0.3
CD44-227ENST00000528086 NFIAQ12857 509 aa13.19□□□□□ -0.3
CD44-227ENST00000528086 G3BP1Q13283 466 aaKnown RBP eCLIP13.19□□□□□ -0.3
CD44-227ENST00000528086 TNNI3KQ59H18 835 aa13.19□□□□□ -0.3
CD44-227ENST00000528086 TBC1D9Q6ZT07 1266 aa13.19□□□□□ -0.3
CD44-227ENST00000528086 EAF2Q96CJ1 260 aaPredicted RBP13.19□□□□□ -0.3
CD44-227ENST00000528086 NEUROD6Q96NK8 337 aa13.19□□□□□ -0.3
CD44-227ENST00000528086 GPR108Q9NPR9 543 aa13.19□□□□□ -0.3
CD44-227ENST00000528086 FAM198AQ9UFP1 575 aa13.19□□□□□ -0.3
CD44-227ENST00000528086 DBNLQ9UJU6 430 aaKnown RBP13.19□□□□□ -0.3
CD44-227ENST00000528086 AKAP2Q9Y2D5 859 aa13.19□□□□□ -0.3
CD44-227ENST00000528086 FPGT-TNNI3KV9GXZ4 949 aa13.19□□□□□ -0.3
CD44-227ENST00000528086 MYO1BO43795 1136 aa13.18□□□□□ -0.3
CD44-227ENST00000528086 SLURP2P0DP57 97 aa13.18□□□□□ -0.3
CD44-227ENST00000528086 MKRN3Q13064 507 aaKnown RBP13.18□□□□□ -0.3
CD44-227ENST00000528086 FKBP1CQ5VVH2 108 aa13.18□□□□□ -0.3
CD44-227ENST00000528086 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.18□□□□□ -0.3
CD44-227ENST00000528086 CNKSR2Q8WXI2 1034 aa13.18□□□□□ -0.3
CD44-227ENST00000528086 R3HDMLQ9H3Y0 253 aa13.18□□□□□ -0.3
CD44-227ENST00000528086 RNF186Q9NXI6 227 aa13.18□□□□□ -0.3
CD44-227ENST00000528086 CDK5RAP2Q96SN8 1893 aa13.18□□□□□ -0.3
CD44-227ENST00000528086 LDHBP07195 334 aaKnown RBP13.17□□□□□ -0.3
CD44-227ENST00000528086 TTLL12Q14166 644 aaPredicted RBP13.17□□□□□ -0.3
CD44-227ENST00000528086 SPRYD7Q5W111 196 aa13.17□□□□□ -0.3
CD44-227ENST00000528086 SH3BP5LQ7L8J4 393 aa13.17□□□□□ -0.3
CD44-227ENST00000528086 AIDAQ96BJ3 306 aa13.17□□□□□ -0.3
CD44-227ENST00000528086 FAM163AQ96GL9 167 aaPredicted RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms