RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 RDXP35241 583 aaKnown RBP11.53□□□□□ -0.56
PDGFRB-207ENST00000520579 CCDC93Q567U6 631 aa11.53□□□□□ -0.56
PDGFRB-207ENST00000520579 SMARCC1Q92922 1105 aaPredicted RBP11.53□□□□□ -0.56
PDGFRB-207ENST00000520579 MAGEA9P43362 315 aa11.53□□□□□ -0.56
PDGFRB-207ENST00000520579 PROSER3Q2NL68 480 aa11.53□□□□□ -0.56
PDGFRB-207ENST00000520579 BORCS6Q96GS4 357 aa11.53□□□□□ -0.56
PDGFRB-207ENST00000520579 MRPL44Q9H9J2 332 aaKnown RBP11.53□□□□□ -0.56
PDGFRB-207ENST00000520579 TFR2Q9UP52 801 aa11.53□□□□□ -0.56
PDGFRB-207ENST00000520579 ZNF330Q9Y3S2 320 aaPredicted RBP11.53□□□□□ -0.56
PDGFRB-207ENST00000520579 PSDA5PKW4 1024 aaPredicted RBP11.52□□□□□ -0.56
PDGFRB-207ENST00000520579 SYKP43405 635 aa11.52□□□□□ -0.56
PDGFRB-207ENST00000520579 WASHC4Q2M389 1173 aa11.52□□□□□ -0.56
PDGFRB-207ENST00000520579 MAP9Q49MG5 647 aa11.52□□□□□ -0.56
PDGFRB-207ENST00000520579 HSP90AB4PQ58FF6 505 aa11.52□□□□□ -0.56
PDGFRB-207ENST00000520579 NCAPH2Q6IBW4 605 aa11.52□□□□□ -0.56
PDGFRB-207ENST00000520579 GPR161Q8N6U8 529 aaKnown RBP11.52□□□□□ -0.56
PDGFRB-207ENST00000520579 THOC1Q96FV9 657 aaKnown RBP11.52□□□□□ -0.56
PDGFRB-207ENST00000520579 LGR6Q9HBX8 967 aa11.52□□□□□ -0.56
PDGFRB-207ENST00000520579 FAM53CQ9NYF3 392 aa11.52□□□□□ -0.56
PDGFRB-207ENST00000520579 NPATQ14207 1427 aa11.52□□□□□ -0.57
PDGFRB-207ENST00000520579 MMS22LQ6ZRQ5 1243 aa11.52□□□□□ -0.57
PDGFRB-207ENST00000520579 STAMQ92783 540 aa11.52□□□□□ -0.57
PDGFRB-207ENST00000520579 ZSCAN16Q9H4T2 348 aaPredicted RBP11.52□□□□□ -0.57
PDGFRB-207ENST00000520579 GNAT3A8MTJ3 354 aa11.52□□□□□ -0.57
PDGFRB-207ENST00000520579 WASLO00401 505 aaPredicted RBP11.52□□□□□ -0.57
PDGFRB-207ENST00000520579 EIF3JO75822 258 aaKnown RBP11.52□□□□□ -0.57
PDGFRB-207ENST00000520579 PFKFB1P16118 471 aa11.52□□□□□ -0.57
PDGFRB-207ENST00000520579 VSNL1P62760 191 aa11.52□□□□□ -0.57
PDGFRB-207ENST00000520579 NSUN7Q8NE18 718 aaKnown RBP11.52□□□□□ -0.57
PDGFRB-207ENST00000520579 IL17REQ8NFR9 667 aa11.52□□□□□ -0.57
PDGFRB-207ENST00000520579 PICK1Q9NRD5 415 aa11.52□□□□□ -0.57
PDGFRB-207ENST00000520579 AKAP2Q9Y2D5 859 aa11.52□□□□□ -0.57
PDGFRB-207ENST00000520579 CCDC61Q9Y6R9 512 aa11.52□□□□□ -0.57
PDGFRB-207ENST00000520579 KIF24Q5T7B8 1368 aa11.51□□□□□ -0.57
PDGFRB-207ENST00000520579 NLRP6P59044 892 aa11.51□□□□□ -0.57
PDGFRB-207ENST00000520579 PLEKHO1Q53GL0 409 aaPredicted RBP11.51□□□□□ -0.57
PDGFRB-207ENST00000520579 TMTC2Q8N394 836 aa11.51□□□□□ -0.57
PDGFRB-207ENST00000520579 EEF2KMTQ96G04 330 aa11.51□□□□□ -0.57
PDGFRB-207ENST00000520579 PSMB7Q99436 277 aa11.51□□□□□ -0.57
PDGFRB-207ENST00000520579 TM6SF1Q9BZW5 370 aa11.51□□□□□ -0.57
PDGFRB-207ENST00000520579 OSBPL5Q9H0X9 879 aaPredicted RBP11.51□□□□□ -0.57
PDGFRB-207ENST00000520579 KAT6BQ8WYB5 2073 aa11.51□□□□□ -0.57
PDGFRB-207ENST00000520579 ABCC1P33527 1531 aa11.51□□□□□ -0.57
PDGFRB-207ENST00000520579 CASP1P29466 404 aa11.51□□□□□ -0.57
PDGFRB-207ENST00000520579 PEX19P40855 299 aa11.51□□□□□ -0.57
PDGFRB-207ENST00000520579 KIRREL3Q8IZU9 778 aa11.51□□□□□ -0.57
PDGFRB-207ENST00000520579 ACRBPQ8NEB7 543 aa11.51□□□□□ -0.57
PDGFRB-207ENST00000520579 GOLGA8BA8MQT2 603 aa11.51□□□□□ -0.57
PDGFRB-207ENST00000520579 HDXQ7Z353 690 aa11.51□□□□□ -0.57
PDGFRB-207ENST00000520579 CAGE1Q8TC20 777 aa11.51□□□□□ -0.57
PDGFRB-207ENST00000520579 EXOC4Q96A65 974 aa11.51□□□□□ -0.57
PDGFRB-207ENST00000520579 RCOR1Q9UKL0 485 aa11.51□□□□□ -0.57
PDGFRB-207ENST00000520579 TTC21BQ7Z4L5 1316 aa11.51□□□□□ -0.57
PDGFRB-207ENST00000520579 ECEL1O95672 775 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 CAVIN2O95810 425 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 ABL1P00519 1130 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 IVLP07476 585 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 PAX7P23759 505 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 ZC3H12AQ5D1E8 599 aaKnown RBP11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 MUM1L1Q5H9M0 696 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 STOX1Q6ZVD7 989 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 RBM33Q96EV2 1170 aaKnown RBP11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 SUCLG2Q96I99 432 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 ABCC3O15438 1527 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 KIF3CO14782 793 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 KIF5CO60282 957 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 ZEB2O60315 1214 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 ERLIN1O75477 346 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 TXLNAP40222 546 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 CCT6AP40227 531 aaKnown RBP11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 AFMP43652 599 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 RBM43Q6ZSC3 357 aaKnown RBP11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 RIC3Q7Z5B4 369 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 JPH2Q9BR39 696 aaPredicted RBP11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 SRGAP2O75044 1071 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 TAF5LO75529 589 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 SASH1O94885 1247 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 FKBP4Q02790 459 aaKnown RBP eCLIP11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 RNF187Q5TA31 235 aaPredicted RBP11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 FMR1NBQ8N0W7 255 aaPredicted RBP11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 SAMSN1Q9NSI8 373 aaKnown RBP11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 GUCA1BQ9UMX6 200 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 NFE2L3Q9Y4A8 694 aa11.5□□□□□ -0.57
PDGFRB-207ENST00000520579 ATP5J2-PTCD1G3V325 749 aa11.49□□□□□ -0.57
PDGFRB-207ENST00000520579 CCP110O43303 1012 aa11.49□□□□□ -0.57
PDGFRB-207ENST00000520579 PTCD1O75127 700 aaKnown RBP11.49□□□□□ -0.57
PDGFRB-207ENST00000520579 NLRP12P59046 1061 aa11.49□□□□□ -0.57
PDGFRB-207ENST00000520579 MYL5Q02045 173 aa11.49□□□□□ -0.57
PDGFRB-207ENST00000520579 CASP8Q14790 479 aa11.49□□□□□ -0.57
PDGFRB-207ENST00000520579 LRRC31Q6UY01 552 aa11.49□□□□□ -0.57
PDGFRB-207ENST00000520579 SMYD4Q8IYR2 804 aaPredicted RBP11.49□□□□□ -0.57
PDGFRB-207ENST00000520579 SLC35F6Q8N357 371 aa11.49□□□□□ -0.57
PDGFRB-207ENST00000520579 DBNDD2Q9BQY9 259 aa11.49□□□□□ -0.57
PDGFRB-207ENST00000520579 MYL10Q9BUA6 226 aa11.49□□□□□ -0.57
PDGFRB-207ENST00000520579 IMPACTQ9P2X3 320 aa11.49□□□□□ -0.57
PDGFRB-207ENST00000520579 MYOM2P54296 1465 aa11.49□□□□□ -0.57
PDGFRB-207ENST00000520579 KLF18A0A0U1RQI7 1052 aa11.49□□□□□ -0.57
PDGFRB-207ENST00000520579 CTDNEP1O95476 244 aa11.49□□□□□ -0.57
PDGFRB-207ENST00000520579 ADD1P35611 737 aaKnown RBP11.49□□□□□ -0.57
PDGFRB-207ENST00000520579 USP8P40818 1118 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms