RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 ZNRF3Q9ULT6 936 aa15.67■□□□□ 0.1
LIMCH1-220ENST00000514190 RAD50Q92878 1312 aa15.67■□□□□ 0.1
LIMCH1-220ENST00000514190 USP17L3A6NCW0 530 aa15.66■□□□□ 0.1
LIMCH1-220ENST00000514190 USP17L4A6NCW7 530 aa15.66■□□□□ 0.1
LIMCH1-220ENST00000514190 YDJCA8MPS7 323 aa15.66■□□□□ 0.1
LIMCH1-220ENST00000514190 LDHBP07195 334 aaKnown RBP15.66■□□□□ 0.1
LIMCH1-220ENST00000514190 MFSD14BQ5SR56 506 aa15.66■□□□□ 0.1
LIMCH1-220ENST00000514190 USP17L1Q7RTZ2 530 aa15.66■□□□□ 0.1
LIMCH1-220ENST00000514190 NIM1KQ8IY84 436 aa15.66■□□□□ 0.1
LIMCH1-220ENST00000514190 OSBP2Q969R2 916 aa15.66■□□□□ 0.1
LIMCH1-220ENST00000514190 IL25Q9H293 177 aa15.66■□□□□ 0.1
LIMCH1-220ENST00000514190 RRAGCQ9HB90 399 aa15.66■□□□□ 0.1
LIMCH1-220ENST00000514190 SUGT1Q9Y2Z0 365 aa15.66■□□□□ 0.1
LIMCH1-220ENST00000514190 ZNF532Q9HCE3 1301 aa15.66■□□□□ 0.1
LIMCH1-220ENST00000514190 REC8O95072 547 aa15.65■□□□□ 0.1
LIMCH1-220ENST00000514190 CYP7A1P22680 504 aa15.65■□□□□ 0.1
LIMCH1-220ENST00000514190 PRDX5P30044 214 aa15.65■□□□□ 0.1
LIMCH1-220ENST00000514190 MECOMQ03112 1051 aa15.65■□□□□ 0.1
LIMCH1-220ENST00000514190 GRIK5Q16478 980 aa15.65■□□□□ 0.1
LIMCH1-220ENST00000514190 DACT2Q5SW24 774 aa15.65■□□□□ 0.1
LIMCH1-220ENST00000514190 NAA16Q6N069 864 aaPredicted RBP15.65■□□□□ 0.1
LIMCH1-220ENST00000514190 DPY19L2Q6NUT2 758 aa15.65■□□□□ 0.1
LIMCH1-220ENST00000514190 ZNF384Q8TF68 577 aa15.65■□□□□ 0.1
LIMCH1-220ENST00000514190 JDP2Q8WYK2 163 aa15.65■□□□□ 0.1
LIMCH1-220ENST00000514190 NSUN4Q96CB9 384 aaKnown RBP15.65■□□□□ 0.1
LIMCH1-220ENST00000514190 SEC62Q99442 399 aaKnown RBP15.65■□□□□ 0.1
LIMCH1-220ENST00000514190 WDR90Q96KV7 1748 aa15.65■□□□□ 0.1
LIMCH1-220ENST00000514190 MFAP1P55081 439 aaKnown RBP15.64■□□□□ 0.09
LIMCH1-220ENST00000514190 CERS5Q8N5B7 392 aa15.64■□□□□ 0.09
LIMCH1-220ENST00000514190 RBM46Q8TBY0 533 aaKnown RBP15.64■□□□□ 0.09
LIMCH1-220ENST00000514190 FBXW7Q969H0 707 aa15.64■□□□□ 0.09
LIMCH1-220ENST00000514190 PUS7LQ9H0K6 701 aaKnown RBP15.64■□□□□ 0.09
LIMCH1-220ENST00000514190 M0R2C6 588 aa15.63■□□□□ 0.09
LIMCH1-220ENST00000514190 LDHCP07864 332 aa15.63■□□□□ 0.09
LIMCH1-220ENST00000514190 VIL1P09327 827 aaKnown RBP15.63■□□□□ 0.09
LIMCH1-220ENST00000514190 VEGFAP15692 232 aaPredicted RBP15.63■□□□□ 0.09
LIMCH1-220ENST00000514190 HSPA6P17066 643 aa15.63■□□□□ 0.09
LIMCH1-220ENST00000514190 GSTO1P78417 241 aa15.63■□□□□ 0.09
LIMCH1-220ENST00000514190 KIAA1211Q6ZU35 1233 aa15.63■□□□□ 0.09
LIMCH1-220ENST00000514190 DZIP1Q86YF9 867 aaKnown RBP15.63■□□□□ 0.09
LIMCH1-220ENST00000514190 MXD3Q9BW11 206 aa15.63■□□□□ 0.09
LIMCH1-220ENST00000514190 MAST3O60307 1309 aa15.63■□□□□ 0.09
LIMCH1-220ENST00000514190 AK9Q5TCS8 1911 aa15.62■□□□□ 0.09
LIMCH1-220ENST00000514190 EPB41L2O43491 1005 aaKnown RBP15.62■□□□□ 0.09
LIMCH1-220ENST00000514190 RAD17O75943 681 aa15.62■□□□□ 0.09
LIMCH1-220ENST00000514190 CXCL9Q07325 125 aa15.62■□□□□ 0.09
LIMCH1-220ENST00000514190 ZNF589Q86UQ0 364 aaPredicted RBP15.62■□□□□ 0.09
LIMCH1-220ENST00000514190 FAM163AQ96GL9 167 aaPredicted RBP15.62■□□□□ 0.09
LIMCH1-220ENST00000514190 USP26Q9BXU7 913 aa15.62■□□□□ 0.09
LIMCH1-220ENST00000514190 LSG1Q9H089 658 aaKnown RBP15.62■□□□□ 0.09
LIMCH1-220ENST00000514190 UPF2Q9HAU5 1272 aaKnown RBP15.62■□□□□ 0.09
LIMCH1-220ENST00000514190 ANO2Q9NQ90 1003 aa15.62■□□□□ 0.09
LIMCH1-220ENST00000514190 COL4A5P29400 1685 aa15.62■□□□□ 0.09
LIMCH1-220ENST00000514190 CCDC171Q6TFL3 1326 aa15.62■□□□□ 0.09
LIMCH1-220ENST00000514190 CCDC129Q6ZRS4 1044 aa15.61■□□□□ 0.09
LIMCH1-220ENST00000514190 ADGRA1Q86SQ6 560 aa15.61■□□□□ 0.09
LIMCH1-220ENST00000514190 SLF2Q8IX21 1173 aa15.61■□□□□ 0.09
LIMCH1-220ENST00000514190 MRIQ9BWK5 157 aa15.61■□□□□ 0.09
LIMCH1-220ENST00000514190 FZD9O00144 591 aa15.6■□□□□ 0.09
LIMCH1-220ENST00000514190 PSMD14O00487 310 aa15.6■□□□□ 0.09
LIMCH1-220ENST00000514190 GPAA1O43292 621 aa15.6■□□□□ 0.09
LIMCH1-220ENST00000514190 DDNO94850 711 aaPredicted RBP15.6■□□□□ 0.09
LIMCH1-220ENST00000514190 PTH1RQ03431 593 aa15.6■□□□□ 0.09
LIMCH1-220ENST00000514190 TNIP1Q15025 636 aa15.6■□□□□ 0.09
LIMCH1-220ENST00000514190 CIAPIN1Q6FI81 312 aa15.6■□□□□ 0.09
LIMCH1-220ENST00000514190 RSBN1LQ6PCB5 846 aaPredicted RBP15.6■□□□□ 0.09
LIMCH1-220ENST00000514190 AIDAQ96BJ3 306 aa15.6■□□□□ 0.09
LIMCH1-220ENST00000514190 STRBPQ96SI9 672 aaKnown RBP15.6■□□□□ 0.09
LIMCH1-220ENST00000514190 TTF2Q9UNY4 1162 aaKnown RBP15.6■□□□□ 0.09
LIMCH1-220ENST00000514190 DOCK2Q92608 1830 aa15.59■□□□□ 0.09
LIMCH1-220ENST00000514190 MAGEB6P1A0A0J9YX57 407 aa15.59■□□□□ 0.09
LIMCH1-220ENST00000514190 POTECB2RU33 542 aa15.59■□□□□ 0.09
LIMCH1-220ENST00000514190 MBD4O95243 580 aa15.59■□□□□ 0.09
LIMCH1-220ENST00000514190 PPP4CP60510 307 aa15.59■□□□□ 0.09
LIMCH1-220ENST00000514190 HDLBPQ00341 1268 aaKnown RBP15.59■□□□□ 0.09
LIMCH1-220ENST00000514190 FSTL1Q12841 308 aa15.59■□□□□ 0.09
LIMCH1-220ENST00000514190 DIXDC1Q155Q3 683 aa15.59■□□□□ 0.09
LIMCH1-220ENST00000514190 MIGA1Q8NAN2 632 aa15.59■□□□□ 0.09
LIMCH1-220ENST00000514190 MAP4K1Q92918 833 aa15.59■□□□□ 0.09
LIMCH1-220ENST00000514190 GMLQ99445 158 aa15.59■□□□□ 0.09
LIMCH1-220ENST00000514190 RIOK1Q9BRS2 568 aaKnown RBP15.59■□□□□ 0.09
LIMCH1-220ENST00000514190 TSHZ2Q9NRE2 1034 aa15.59■□□□□ 0.09
LIMCH1-220ENST00000514190 MYO3BQ8WXR4 1341 aa15.59■□□□□ 0.09
LIMCH1-220ENST00000514190 ZNF541Q9H0D2 1346 aa15.59■□□□□ 0.09
LIMCH1-220ENST00000514190 MYH13Q9UKX3 1938 aa15.58■□□□□ 0.09
LIMCH1-220ENST00000514190 GPR75-ASB3A0A0A6YYF3 556 aa15.58■□□□□ 0.08
LIMCH1-220ENST00000514190 EIF6P56537 245 aaKnown RBP15.58■□□□□ 0.08
LIMCH1-220ENST00000514190 HHIPL2Q6UWX4 724 aa15.58■□□□□ 0.08
LIMCH1-220ENST00000514190 SMC1BQ8NDV3 1235 aa15.58■□□□□ 0.08
LIMCH1-220ENST00000514190 L3MBTL3Q96JM7 780 aaPredicted RBP15.58■□□□□ 0.08
LIMCH1-220ENST00000514190 DSCC1Q9BVC3 393 aa15.58■□□□□ 0.08
LIMCH1-220ENST00000514190 C22orf23Q9BZE7 217 aa15.58■□□□□ 0.08
LIMCH1-220ENST00000514190 ARMT1Q9H993 441 aa15.58■□□□□ 0.08
LIMCH1-220ENST00000514190 MROH7-TTC4A0A0A0MT08 1334 aa15.58■□□□□ 0.08
LIMCH1-220ENST00000514190 GAKO14976 1311 aa15.58■□□□□ 0.08
LIMCH1-220ENST00000514190 MYO5AQ9Y4I1 1855 aaKnown RBP15.58■□□□□ 0.08
LIMCH1-220ENST00000514190 SCN9AQ15858 1988 aa15.58■□□□□ 0.08
LIMCH1-220ENST00000514190 SCN4AP35499 1836 aa15.57■□□□□ 0.08
LIMCH1-220ENST00000514190 F8W031 263 aaPredicted RBP15.57■□□□□ 0.08
LIMCH1-220ENST00000514190 BAG3O95817 575 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms