RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 LRP2BPQ9P2M1 347 aa36.02■■■■□ 3.36
LIMCH1-211ENST00000509638 OGFOD1Q8N543 542 aa36.01■■■■□ 3.35
LIMCH1-211ENST00000509638 MAP4K4O95819 1239 aaPredicted RBP36■■■■□ 3.35
LIMCH1-211ENST00000509638 EPS15P42566 896 aa36■■■■□ 3.35
LIMCH1-211ENST00000509638 TTF1Q15361 905 aaPredicted RBP36■■■■□ 3.35
LIMCH1-211ENST00000509638 ERICH6Q7L0X2 663 aa36■■■■□ 3.35
LIMCH1-211ENST00000509638 HACL1Q9UJ83 578 aa36■■■■□ 3.35
LIMCH1-211ENST00000509638 MAST3O60307 1309 aa36■■■■□ 3.35
LIMCH1-211ENST00000509638 IQCA1LA6NCM1 817 aa35.99■■■■□ 3.35
LIMCH1-211ENST00000509638 DZIP1Q86YF9 867 aaKnown RBP35.99■■■■□ 3.35
LIMCH1-211ENST00000509638 HDAC9Q9UKV0 1011 aa35.99■■■■□ 3.35
LIMCH1-211ENST00000509638 ZNF280AP59817 542 aaPredicted RBP35.98■■■■□ 3.35
LIMCH1-211ENST00000509638 NMRK2Q9NPI5 230 aa35.98■■■■□ 3.35
LIMCH1-211ENST00000509638 RAI14Q9P0K7 980 aa35.98■■■■□ 3.35
LIMCH1-211ENST00000509638 POTECB2RU33 542 aa35.98■■■■□ 3.35
LIMCH1-211ENST00000509638 H7C1D1 291 aa35.98■■■■□ 3.35
LIMCH1-211ENST00000509638 IDH1O75874 414 aaKnown RBP35.98■■■■□ 3.35
LIMCH1-211ENST00000509638 MECOMQ03112 1051 aa35.96■■■■□ 3.35
LIMCH1-211ENST00000509638 RRAGCQ9HB90 399 aa35.96■■■■□ 3.35
LIMCH1-211ENST00000509638 ECM29Q5VYK3 1845 aa35.95■■■■□ 3.35
LIMCH1-211ENST00000509638 DIXDC1Q155Q3 683 aa35.95■■■■□ 3.35
LIMCH1-211ENST00000509638 GPBP1L1Q9HC44 474 aaPredicted RBP35.95■■■■□ 3.35
LIMCH1-211ENST00000509638 MYOZ2Q9NPC6 264 aa35.95■■■■□ 3.35
LIMCH1-211ENST00000509638 EGFRP00533 1210 aa35.94■■■■□ 3.34
LIMCH1-211ENST00000509638 EPHX2P34913 555 aa35.94■■■■□ 3.34
LIMCH1-211ENST00000509638 RGS3P49796 1198 aa35.94■■■■□ 3.34
LIMCH1-211ENST00000509638 SAMD7Q7Z3H4 446 aa35.94■■■■□ 3.34
LIMCH1-211ENST00000509638 ADARB2Q9NS39 739 aaKnown RBP35.94■■■■□ 3.34
LIMCH1-211ENST00000509638 MMP14P50281 582 aa35.93■■■■□ 3.34
LIMCH1-211ENST00000509638 TBC1D10BQ4KMP7 808 aaPredicted RBP35.93■■■■□ 3.34
LIMCH1-211ENST00000509638 TRPM4Q8TD43 1214 aa35.93■■■■□ 3.34
LIMCH1-211ENST00000509638 ZNF384Q8TF68 577 aa35.93■■■■□ 3.34
LIMCH1-211ENST00000509638 NSUN4Q96CB9 384 aaKnown RBP35.93■■■■□ 3.34
LIMCH1-211ENST00000509638 TAF1DQ9H5J8 278 aaPredicted RBP35.93■■■■□ 3.34
LIMCH1-211ENST00000509638 SERPINA10Q9UK55 444 aa35.93■■■■□ 3.34
LIMCH1-211ENST00000509638 VEGFAP15692 232 aaPredicted RBP35.93■■■■□ 3.34
LIMCH1-211ENST00000509638 MAP3K12Q12852 859 aa35.93■■■■□ 3.34
LIMCH1-211ENST00000509638 KIF4BQ2VIQ3 1234 aa35.93■■■■□ 3.34
LIMCH1-211ENST00000509638 TTC22Q5TAA0 569 aa35.93■■■■□ 3.34
LIMCH1-211ENST00000509638 TEKT1Q969V4 418 aa35.93■■■■□ 3.34
LIMCH1-211ENST00000509638 CRKP46108 304 aa35.92■■■■□ 3.34
LIMCH1-211ENST00000509638 KBTBD3Q8NAB2 608 aa35.91■■■■□ 3.34
LIMCH1-211ENST00000509638 PCDHAC2Q9Y5I4 1007 aa35.91■■■■□ 3.34
LIMCH1-211ENST00000509638 RBM5P52756 815 aaKnown RBP eCLIP35.9■■■■□ 3.34
LIMCH1-211ENST00000509638 HDLBPQ00341 1268 aaKnown RBP35.9■■■■□ 3.34
LIMCH1-211ENST00000509638 CFAP100Q494V2 611 aa35.9■■■■□ 3.34
LIMCH1-211ENST00000509638 RBM26Q5T8P6 1007 aaKnown RBP35.9■■■■□ 3.34
LIMCH1-211ENST00000509638 TRIM6-TRIM34B2RNG4 842 aa35.89■■■■□ 3.34
LIMCH1-211ENST00000509638 GSPT1P15170 499 aaKnown RBP35.89■■■■□ 3.34
LIMCH1-211ENST00000509638 NAA16Q6N069 864 aaPredicted RBP35.89■■■■□ 3.34
LIMCH1-211ENST00000509638 ZNF784Q8NCA9 323 aaPredicted RBP35.89■■■■□ 3.34
LIMCH1-211ENST00000509638 MAGEB6Q8N7X4 407 aa35.89■■■■□ 3.34
LIMCH1-211ENST00000509638 DDX24Q9GZR7 859 aaKnown RBP eCLIP35.89■■■■□ 3.34
LIMCH1-211ENST00000509638 IGSF3O75054 1194 aa35.88■■■■□ 3.33
LIMCH1-211ENST00000509638 GSTO1P78417 241 aa35.88■■■■□ 3.33
LIMCH1-211ENST00000509638 DLGAP5Q15398 846 aa35.88■■■■□ 3.33
LIMCH1-211ENST00000509638 EVI5LQ96CN4 794 aa35.88■■■■□ 3.33
LIMCH1-211ENST00000509638 FSD1Q9BTV5 496 aa35.88■■■■□ 3.33
LIMCH1-211ENST00000509638 DAGLAQ9Y4D2 1042 aa35.88■■■■□ 3.33
LIMCH1-211ENST00000509638 MROH7-TTC4A0A0A0MT08 1334 aa35.87■■■■□ 3.33
LIMCH1-211ENST00000509638 PDE6AP16499 860 aa35.87■■■■□ 3.33
LIMCH1-211ENST00000509638 SLC9C2Q5TAH2 1124 aa35.87■■■■□ 3.33
LIMCH1-211ENST00000509638 HHIPL2Q6UWX4 724 aa35.87■■■■□ 3.33
LIMCH1-211ENST00000509638 SLF2Q8IX21 1173 aa35.87■■■■□ 3.33
LIMCH1-211ENST00000509638 GAKO14976 1311 aa35.86■■■■□ 3.33
LIMCH1-211ENST00000509638 USP50Q70EL3 339 aaPredicted RBP35.86■■■■□ 3.33
LIMCH1-211ENST00000509638 CNTROBQ8N137 903 aa35.86■■■■□ 3.33
LIMCH1-211ENST00000509638 MTMR14Q8NCE2 650 aa35.86■■■■□ 3.33
LIMCH1-211ENST00000509638 ZDHHC15Q96MV8 337 aa35.86■■■■□ 3.33
LIMCH1-211ENST00000509638 MRIQ9BWK5 157 aa35.86■■■■□ 3.33
LIMCH1-211ENST00000509638 SPDYE2BA6NHP3 402 aa35.85■■■■□ 3.33
LIMCH1-211ENST00000509638 SPDYE6P0CI01 402 aa35.85■■■■□ 3.33
LIMCH1-211ENST00000509638 EAPPQ56P03 285 aaPredicted RBP35.85■■■■□ 3.33
LIMCH1-211ENST00000509638 RILPL2Q969X0 211 aa35.85■■■■□ 3.33
LIMCH1-211ENST00000509638 HIRAP54198 1017 aaPredicted RBP35.85■■■■□ 3.33
LIMCH1-211ENST00000509638 PNMA8AQ86V59 439 aaPredicted RBP35.85■■■■□ 3.33
LIMCH1-211ENST00000509638 ZBED3Q96IU2 234 aaPredicted RBP35.85■■■■□ 3.33
LIMCH1-211ENST00000509638 WNT10BO00744 389 aa35.84■■■■□ 3.33
LIMCH1-211ENST00000509638 NBPF9Q3BBW0 867 aa35.84■■■■□ 3.33
LIMCH1-211ENST00000509638 ADGRA1Q86SQ6 560 aa35.84■■■■□ 3.33
LIMCH1-211ENST00000509638 CYP7A1P22680 504 aa35.83■■■■□ 3.33
LIMCH1-211ENST00000509638 ZNF532Q9HCE3 1301 aa35.83■■■■□ 3.33
LIMCH1-211ENST00000509638 CHGBP05060 677 aa35.82■■■■□ 3.32
LIMCH1-211ENST00000509638 ADD2P35612 726 aa35.82■■■■□ 3.32
LIMCH1-211ENST00000509638 PRMT6Q96LA8 375 aaPredicted RBP35.82■■■■□ 3.32
LIMCH1-211ENST00000509638 LDHCP07864 332 aa35.81■■■■□ 3.32
LIMCH1-211ENST00000509638 ZSCAN25Q6NSZ9 544 aa35.81■■■■□ 3.32
LIMCH1-211ENST00000509638 TMED8Q6PL24 325 aaPredicted RBP35.81■■■■□ 3.32
LIMCH1-211ENST00000509638 FAM163AQ96GL9 167 aaPredicted RBP35.81■■■■□ 3.32
LIMCH1-211ENST00000509638 RFX7Q2KHR2 1363 aa35.81■■■■□ 3.32
LIMCH1-211ENST00000509638 TCRBV5S4A2TA0A5A2 114 aa35.81■■■■□ 3.32
LIMCH1-211ENST00000509638 SLFNL1Q499Z3 407 aa35.81■■■■□ 3.32
LIMCH1-211ENST00000509638 APOBEC3HQ6NTF7 200 aaKnown RBP35.81■■■■□ 3.32
LIMCH1-211ENST00000509638 ASTN2O75129 1339 aaPredicted RBP35.8■■■■□ 3.32
LIMCH1-211ENST00000509638 POTEIP0CG38 1075 aa35.8■■■■□ 3.32
LIMCH1-211ENST00000509638 POTEJP0CG39 1038 aa35.8■■■■□ 3.32
LIMCH1-211ENST00000509638 SDSP20132 328 aa35.8■■■■□ 3.32
LIMCH1-211ENST00000509638 BTDP43251 543 aa35.8■■■■□ 3.32
LIMCH1-211ENST00000509638 LRRFIP1Q32MZ4 808 aaKnown RBP35.79■■■■□ 3.32
LIMCH1-211ENST00000509638 CDK5RAP2Q96SN8 1893 aa35.79■■■■□ 3.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms