RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 ZNF777Q9ULD5 760 aaPredicted RBP7.16□□□□□ -1.26
NUP54-206ENST00000508465 ARID4BQ4LE39 1312 aaPredicted RBP7.16□□□□□ -1.26
NUP54-206ENST00000508465 TROQ12816 1431 aaPredicted RBP7.16□□□□□ -1.26
NUP54-206ENST00000508465 WDR64B1ANS9 1081 aa7.15□□□□□ -1.26
NUP54-206ENST00000508465 TNFRSF10BO14763 440 aa7.15□□□□□ -1.26
NUP54-206ENST00000508465 GAS2O43903 313 aaKnown RBP7.15□□□□□ -1.26
NUP54-206ENST00000508465 ADAM11O75078 769 aa7.15□□□□□ -1.26
NUP54-206ENST00000508465 ELOAQ14241 798 aaKnown RBP7.15□□□□□ -1.26
NUP54-206ENST00000508465 FAM26DQ5JW98 314 aa7.15□□□□□ -1.26
NUP54-206ENST00000508465 PDE12Q6L8Q7 609 aaKnown RBP7.15□□□□□ -1.26
NUP54-206ENST00000508465 MKNK1Q9BUB5 465 aa7.15□□□□□ -1.26
NUP54-206ENST00000508465 RUSC1Q9BVN2 902 aa7.15□□□□□ -1.26
NUP54-206ENST00000508465 ATG3Q9NT62 314 aa7.15□□□□□ -1.26
NUP54-206ENST00000508465 PHLDB1Q86UU1 1377 aa7.15□□□□□ -1.26
NUP54-206ENST00000508465 PLCH2O75038 1416 aa7.15□□□□□ -1.27
NUP54-206ENST00000508465 FANCAO15360 1455 aa7.15□□□□□ -1.27
NUP54-206ENST00000508465 ARAP3Q8WWN8 1544 aa7.15□□□□□ -1.27
NUP54-206ENST00000508465 TTC37Q6PGP7 1564 aa7.15□□□□□ -1.27
NUP54-206ENST00000508465 HECW1Q76N89 1606 aa7.15□□□□□ -1.27
NUP54-206ENST00000508465 PCF11O94913 1555 aaKnown RBP7.14□□□□□ -1.27
NUP54-206ENST00000508465 CYP2E1P05181 493 aaPredicted RBP7.14□□□□□ -1.27
NUP54-206ENST00000508465 RPLP1P05386 114 aaKnown RBP7.14□□□□□ -1.27
NUP54-206ENST00000508465 HNRNPMP52272 730 aaKnown RBP eCLIP7.14□□□□□ -1.27
NUP54-206ENST00000508465 FZD5Q13467 585 aa7.14□□□□□ -1.27
NUP54-206ENST00000508465 NEO1Q92859 1461 aa7.14□□□□□ -1.27
NUP54-206ENST00000508465 LRRIQ1Q96JM4 1722 aa7.14□□□□□ -1.27
NUP54-206ENST00000508465 SCAPERQ9BY12 1400 aa7.14□□□□□ -1.27
NUP54-206ENST00000508465 ELP3Q9H9T3 547 aa7.14□□□□□ -1.27
NUP54-206ENST00000508465 CXXC1Q9P0U4 656 aaPredicted RBP7.14□□□□□ -1.27
NUP54-206ENST00000508465 PIM2Q9P1W9 311 aa7.14□□□□□ -1.27
NUP54-206ENST00000508465 KIF14Q15058 1648 aa7.13□□□□□ -1.27
NUP54-206ENST00000508465 DENND4BO75064 1496 aaPredicted RBP7.13□□□□□ -1.27
NUP54-206ENST00000508465 PREPP48147 710 aa7.13□□□□□ -1.27
NUP54-206ENST00000508465 NLRP12P59046 1061 aa7.13□□□□□ -1.27
NUP54-206ENST00000508465 MLECQ14165 292 aa7.13□□□□□ -1.27
NUP54-206ENST00000508465 ADAMTSL4Q6UY14 1074 aa7.13□□□□□ -1.27
NUP54-206ENST00000508465 ZNF438Q7Z4V0 828 aa7.13□□□□□ -1.27
NUP54-206ENST00000508465 ADGRE2Q9UHX3 823 aa7.13□□□□□ -1.27
NUP54-206ENST00000508465 ANGEL1Q9UNK9 670 aaKnown RBP7.13□□□□□ -1.27
NUP54-206ENST00000508465 LEMD3Q9Y2U8 911 aa7.13□□□□□ -1.27
NUP54-206ENST00000508465 FYCO1Q9BQS8 1478 aa7.12□□□□□ -1.27
NUP54-206ENST00000508465 MTUS2Q5JR59 1369 aa7.12□□□□□ -1.27
NUP54-206ENST00000508465 ZNF644Q9H582 1327 aaPredicted RBP7.12□□□□□ -1.27
NUP54-206ENST00000508465 MEGF11A6BM72 1044 aa7.12□□□□□ -1.27
NUP54-206ENST00000508465 MAP4P27816 1152 aaKnown RBP7.12□□□□□ -1.27
NUP54-206ENST00000508465 RXRBP28702 533 aa7.12□□□□□ -1.27
NUP54-206ENST00000508465 TTC16Q8NEE8 873 aa7.12□□□□□ -1.27
NUP54-206ENST00000508465 SLC7A3Q8WY07 619 aa7.12□□□□□ -1.27
NUP54-206ENST00000508465 MFSD14AQ96MC6 490 aa7.12□□□□□ -1.27
NUP54-206ENST00000508465 ZMYND15Q9H091 742 aa7.12□□□□□ -1.27
NUP54-206ENST00000508465 ADGRL1O94910 1474 aa7.11□□□□□ -1.27
NUP54-206ENST00000508465 PCSK2P16519 638 aa7.11□□□□□ -1.27
NUP54-206ENST00000508465 CES1P23141 567 aa7.11□□□□□ -1.27
NUP54-206ENST00000508465 NUTM2GQ5VZR2 741 aa7.11□□□□□ -1.27
NUP54-206ENST00000508465 CAPN12Q6ZSI9 719 aa7.11□□□□□ -1.27
NUP54-206ENST00000508465 C12orf50Q8NA57 414 aaPredicted RBP7.11□□□□□ -1.27
NUP54-206ENST00000508465 PMEPA1Q969W9 287 aa7.11□□□□□ -1.27
NUP54-206ENST00000508465 CFDP1Q9UEE9 299 aaPredicted RBP7.11□□□□□ -1.27
NUP54-206ENST00000508465 SALL4Q9UJQ4 1053 aa7.11□□□□□ -1.27
NUP54-206ENST00000508465 ZMIZ1Q9ULJ6 1067 aa7.11□□□□□ -1.27
NUP54-206ENST00000508465 ARHGAP5Q13017 1502 aa7.11□□□□□ -1.27
NUP54-206ENST00000508465 CCDC18Q5T9S5 1454 aa7.11□□□□□ -1.27
NUP54-206ENST00000508465 PDE2AO00408 941 aaPredicted RBP7.1□□□□□ -1.27
NUP54-206ENST00000508465 ZBTB39O15060 712 aa7.1□□□□□ -1.27
NUP54-206ENST00000508465 C19orf57Q0VDD7 668 aa7.1□□□□□ -1.27
NUP54-206ENST00000508465 CPSF6Q16630 551 aaKnown RBP eCLIP7.1□□□□□ -1.27
NUP54-206ENST00000508465 NUDT16Q96DE0 195 aaKnown RBP7.1□□□□□ -1.27
NUP54-206ENST00000508465 OSBPL1AQ9BXW6 950 aa7.1□□□□□ -1.27
NUP54-206ENST00000508465 CYP4F12Q9HCS2 524 aa7.1□□□□□ -1.27
NUP54-206ENST00000508465 TMEM63CQ9P1W3 806 aa7.1□□□□□ -1.27
NUP54-206ENST00000508465 KANSL3Q9P2N6 904 aa7.1□□□□□ -1.27
NUP54-206ENST00000508465 YEATS2Q9ULM3 1422 aa7.1□□□□□ -1.27
NUP54-206ENST00000508465 CCNB3Q8WWL7 1395 aa7.09□□□□□ -1.27
NUP54-206ENST00000508465 HOXA10P31260 410 aaPredicted RBP7.09□□□□□ -1.27
NUP54-206ENST00000508465 TMEM132AQ24JP5 1023 aa7.09□□□□□ -1.27
NUP54-206ENST00000508465 FBXL6Q8N531 539 aa7.09□□□□□ -1.27
NUP54-206ENST00000508465 STK32AQ8WU08 396 aa7.09□□□□□ -1.27
NUP54-206ENST00000508465 CNTN3Q9P232 1028 aa7.09□□□□□ -1.27
NUP54-206ENST00000508465 FRMPD1Q5SYB0 1578 aa7.08□□□□□ -1.28
NUP54-206ENST00000508465 ARID1BQ8NFD5 2236 aaPredicted RBP7.08□□□□□ -1.28
NUP54-206ENST00000508465 ARHGEF12Q9NZN5 1544 aa7.08□□□□□ -1.28
NUP54-206ENST00000508465 GPATCH8Q9UKJ3 1502 aaKnown RBP7.08□□□□□ -1.28
NUP54-206ENST00000508465 FOSL1P15407 271 aa7.08□□□□□ -1.28
NUP54-206ENST00000508465 XKR5Q6UX68 686 aa7.08□□□□□ -1.28
NUP54-206ENST00000508465 ABI1Q8IZP0 508 aa7.08□□□□□ -1.28
NUP54-206ENST00000508465 FBXL18Q96ME1 805 aa7.08□□□□□ -1.28
NUP54-206ENST00000508465 METTL22Q9BUU2 404 aaPredicted RBP7.08□□□□□ -1.28
NUP54-206ENST00000508465 DZANK1Q9NVP4 752 aa7.08□□□□□ -1.28
NUP54-206ENST00000508465 TRAPPC8Q9Y2L5 1435 aa7.08□□□□□ -1.28
NUP54-206ENST00000508465 NFKBIEO00221 500 aa7.07□□□□□ -1.28
NUP54-206ENST00000508465 NFKBIBQ15653 356 aa7.07□□□□□ -1.28
NUP54-206ENST00000508465 SGO2Q562F6 1265 aa7.07□□□□□ -1.28
NUP54-206ENST00000508465 PAOXQ6QHF9 649 aa7.07□□□□□ -1.28
NUP54-206ENST00000508465 C1orf127Q8N9H9 656 aa7.07□□□□□ -1.28
NUP54-206ENST00000508465 ASIC4Q96FT7 647 aa7.07□□□□□ -1.28
NUP54-206ENST00000508465 POGZQ7Z3K3 1410 aa7.07□□□□□ -1.28
NUP54-206ENST00000508465 VPS8Q8N3P4 1428 aa7.07□□□□□ -1.28
NUP54-206ENST00000508465 MYO5CQ9NQX4 1742 aa7.07□□□□□ -1.28
NUP54-206ENST00000508465 FAM95CA0A1B0GW59 222 aa7.06□□□□□ -1.28
NUP54-206ENST00000508465 F13BP05160 661 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms