RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 TBC1D22AQ8WUA7 517 aa16.28■□□□□ 0.2
HMGCS1-205ENST00000508319 CLMNQ96JQ2 1002 aa16.28■□□□□ 0.2
HMGCS1-205ENST00000508319 TDRD3Q9H7E2 651 aaKnown RBP16.28■□□□□ 0.2
HMGCS1-205ENST00000508319 PPP1R12BO60237 982 aaPredicted RBP16.27■□□□□ 0.2
HMGCS1-205ENST00000508319 TBC1D8O95759 1140 aa16.27■□□□□ 0.2
HMGCS1-205ENST00000508319 IFIT1P09914 478 aaKnown RBP16.27■□□□□ 0.2
HMGCS1-205ENST00000508319 RARSP54136 660 aaKnown RBP16.27■□□□□ 0.2
HMGCS1-205ENST00000508319 SREBF2Q12772 1141 aa16.27■□□□□ 0.2
HMGCS1-205ENST00000508319 TEPSINQ96N21 525 aa16.27■□□□□ 0.2
HMGCS1-205ENST00000508319 API5Q9BZZ5 524 aaKnown RBP16.27■□□□□ 0.2
HMGCS1-205ENST00000508319 UNCXA6NJT0 531 aa16.26■□□□□ 0.19
HMGCS1-205ENST00000508319 FRAT2O75474 233 aaPredicted RBP16.26■□□□□ 0.19
HMGCS1-205ENST00000508319 ZBTB48P10074 688 aaPredicted RBP16.26■□□□□ 0.19
HMGCS1-205ENST00000508319 HDLBPQ00341 1268 aaKnown RBP16.26■□□□□ 0.19
HMGCS1-205ENST00000508319 CTU1Q7Z7A3 348 aaKnown RBP16.26■□□□□ 0.19
HMGCS1-205ENST00000508319 WNK4Q96J92 1243 aa16.26■□□□□ 0.19
HMGCS1-205ENST00000508319 CFHR5Q9BXR6 569 aa16.26■□□□□ 0.19
HMGCS1-205ENST00000508319 HTTP42858 3142 aa16.25■□□□□ 0.19
HMGCS1-205ENST00000508319 USP2O75604 605 aaPredicted RBP16.25■□□□□ 0.19
HMGCS1-205ENST00000508319 CIAO1O76071 339 aa16.25■□□□□ 0.19
HMGCS1-205ENST00000508319 SLC5A1P13866 664 aa16.25■□□□□ 0.19
HMGCS1-205ENST00000508319 HOXD11P31277 338 aaPredicted RBP16.25■□□□□ 0.19
HMGCS1-205ENST00000508319 RGS19P49795 217 aa16.25■□□□□ 0.19
HMGCS1-205ENST00000508319 NOM1Q5C9Z4 860 aaKnown RBP16.25■□□□□ 0.19
HMGCS1-205ENST00000508319 ZNF296Q8WUU4 475 aaPredicted RBP16.25■□□□□ 0.19
HMGCS1-205ENST00000508319 LPIN2Q92539 896 aa16.25■□□□□ 0.19
HMGCS1-205ENST00000508319 SLC10A4Q96EP9 437 aa16.25■□□□□ 0.19
HMGCS1-205ENST00000508319 MEIS3Q99687 375 aa16.25■□□□□ 0.19
HMGCS1-205ENST00000508319 TMEM39BQ9GZU3 492 aa16.25■□□□□ 0.19
HMGCS1-205ENST00000508319 SIL1Q9H173 461 aa16.25■□□□□ 0.19
HMGCS1-205ENST00000508319 FBXO3Q9UK99 471 aa16.25■□□□□ 0.19
HMGCS1-205ENST00000508319 LRRFIP2Q9Y608 721 aaKnown RBP16.25■□□□□ 0.19
HMGCS1-205ENST00000508319 MANSC4A6NHS7 340 aaPredicted RBP16.24■□□□□ 0.19
HMGCS1-205ENST00000508319 TCP10L2B9ZVM9 353 aa16.24■□□□□ 0.19
HMGCS1-205ENST00000508319 GJA5P36382 358 aa16.24■□□□□ 0.19
HMGCS1-205ENST00000508319 IREB2P48200 963 aaKnown RBP16.24■□□□□ 0.19
HMGCS1-205ENST00000508319 TEKT1Q969V4 418 aa16.24■□□□□ 0.19
HMGCS1-205ENST00000508319 ZDHHC15Q96MV8 337 aa16.24■□□□□ 0.19
HMGCS1-205ENST00000508319 R3HDMLQ9H3Y0 253 aa16.24■□□□□ 0.19
HMGCS1-205ENST00000508319 TNRC18O15417 2968 aaPredicted RBP16.23■□□□□ 0.19
HMGCS1-205ENST00000508319 GPR25O00155 361 aa16.23■□□□□ 0.19
HMGCS1-205ENST00000508319 APOBEC3HQ6NTF7 200 aaKnown RBP16.23■□□□□ 0.19
HMGCS1-205ENST00000508319 ANKRD13AQ8IZ07 590 aa16.23■□□□□ 0.19
HMGCS1-205ENST00000508319 ARHGAP45Q92619 1136 aa16.23■□□□□ 0.19
HMGCS1-205ENST00000508319 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.23■□□□□ 0.19
HMGCS1-205ENST00000508319 SUGT1Q9Y2Z0 365 aa16.23■□□□□ 0.19
HMGCS1-205ENST00000508319 MAST3O60307 1309 aa16.22■□□□□ 0.19
HMGCS1-205ENST00000508319 IGF2BP3O00425 579 aaKnown RBP eCLIP16.22■□□□□ 0.19
HMGCS1-205ENST00000508319 TNNI2P48788 182 aa16.22■□□□□ 0.19
HMGCS1-205ENST00000508319 CACNB3P54284 484 aa16.22■□□□□ 0.19
HMGCS1-205ENST00000508319 INTS3Q68E01 1043 aaKnown RBP16.22■□□□□ 0.19
HMGCS1-205ENST00000508319 IFNL1Q8IU54 200 aa16.22■□□□□ 0.19
HMGCS1-205ENST00000508319 MRIQ9BWK5 157 aa16.22■□□□□ 0.19
HMGCS1-205ENST00000508319 PA2G4Q9UQ80 394 aaKnown RBP16.22■□□□□ 0.19
HMGCS1-205ENST00000508319 ALDH1A1P00352 501 aa16.21■□□□□ 0.19
HMGCS1-205ENST00000508319 IL15P40933 162 aaPredicted RBP16.21■□□□□ 0.19
HMGCS1-205ENST00000508319 INHBEP58166 350 aa16.21■□□□□ 0.19
HMGCS1-205ENST00000508319 ATP2B3Q16720 1220 aa16.21■□□□□ 0.19
HMGCS1-205ENST00000508319 COPRSQ9NQ92 184 aa16.21■□□□□ 0.19
HMGCS1-205ENST00000508319 RPAP1Q9BWH6 1393 aaPredicted RBP16.21■□□□□ 0.19
HMGCS1-205ENST00000508319 TRIM27P14373 513 aa16.2■□□□□ 0.18
HMGCS1-205ENST00000508319 MLLT1Q03111 559 aaPredicted RBP16.2■□□□□ 0.18
HMGCS1-205ENST00000508319 FKBP1CQ5VVH2 108 aa16.2■□□□□ 0.18
HMGCS1-205ENST00000508319 HHIPL2Q6UWX4 724 aa16.2■□□□□ 0.18
HMGCS1-205ENST00000508319 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.2■□□□□ 0.18
HMGCS1-205ENST00000508319 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.2■□□□□ 0.18
HMGCS1-205ENST00000508319 WDR66Q8TBY9 1149 aa16.2■□□□□ 0.18
HMGCS1-205ENST00000508319 ELP3Q9H9T3 547 aa16.2■□□□□ 0.18
HMGCS1-205ENST00000508319 CEP126Q9P2H0 1117 aa16.2■□□□□ 0.18
HMGCS1-205ENST00000508319 HDAC5Q9UQL6 1122 aa16.2■□□□□ 0.18
HMGCS1-205ENST00000508319 FKTNO75072 461 aa16.19■□□□□ 0.18
HMGCS1-205ENST00000508319 PHKA1P46020 1223 aa16.19■□□□□ 0.18
HMGCS1-205ENST00000508319 MTX1Q13505 466 aa16.19■□□□□ 0.18
HMGCS1-205ENST00000508319 VGLL4Q14135 290 aa16.19■□□□□ 0.18
HMGCS1-205ENST00000508319 FAM83AQ86UY5 434 aa16.19■□□□□ 0.18
HMGCS1-205ENST00000508319 CNKSR2Q8WXI2 1034 aa16.19■□□□□ 0.18
HMGCS1-205ENST00000508319 OPTNQ96CV9 577 aa16.19■□□□□ 0.18
HMGCS1-205ENST00000508319 TMOD2Q9NZR1 351 aa16.19■□□□□ 0.18
HMGCS1-205ENST00000508319 HPS5Q9UPZ3 1129 aa16.19■□□□□ 0.18
HMGCS1-205ENST00000508319 TNNQ9UQP3 1299 aa16.19■□□□□ 0.18
HMGCS1-205ENST00000508319 DAGLAQ9Y4D2 1042 aa16.19■□□□□ 0.18
HMGCS1-205ENST00000508319 GNAI3P08754 354 aa16.18■□□□□ 0.18
HMGCS1-205ENST00000508319 PRDX5P30044 214 aa16.18■□□□□ 0.18
HMGCS1-205ENST00000508319 ADORA1P30542 326 aa16.18■□□□□ 0.18
HMGCS1-205ENST00000508319 DIXDC1Q155Q3 683 aa16.18■□□□□ 0.18
HMGCS1-205ENST00000508319 PKN2Q16513 984 aaKnown RBP16.18■□□□□ 0.18
HMGCS1-205ENST00000508319 PTPN18Q99952 460 aa16.18■□□□□ 0.18
HMGCS1-205ENST00000508319 CENPFP49454 3210 aa16.18■□□□□ 0.18
HMGCS1-205ENST00000508319 PDE4DIPQ5VU43 2346 aa16.18■□□□□ 0.18
HMGCS1-205ENST00000508319 SALL1Q9NSC2 1324 aa16.18■□□□□ 0.18
HMGCS1-205ENST00000508319 TESPA1A2RU30 521 aaPredicted RBP16.17■□□□□ 0.18
HMGCS1-205ENST00000508319 ZBTB22O15209 634 aa16.17■□□□□ 0.18
HMGCS1-205ENST00000508319 SRGAP3O43295 1099 aa16.17■□□□□ 0.18
HMGCS1-205ENST00000508319 BCAR3O75815 825 aa16.17■□□□□ 0.18
HMGCS1-205ENST00000508319 SOX10P56693 466 aa16.17■□□□□ 0.18
HMGCS1-205ENST00000508319 ATF7IPQ6VMQ6 1270 aa16.17■□□□□ 0.18
HMGCS1-205ENST00000508319 MS4A4AQ96JQ5 239 aa16.17■□□□□ 0.18
HMGCS1-205ENST00000508319 GNL3LQ9NVN8 582 aaKnown RBP16.17■□□□□ 0.18
HMGCS1-205ENST00000508319 MYH2Q9UKX2 1941 aa16.17■□□□□ 0.18
HMGCS1-205ENST00000508319 SEMA3EO15041 775 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms