RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.53□□□□□ -0.08
COL6A3-213ENST00000493475 HPS5Q9UPZ3 1129 aa14.53□□□□□ -0.08
COL6A3-213ENST00000493475 IRS2Q9Y4H2 1338 aa14.52□□□□□ -0.08
COL6A3-213ENST00000493475 SNAP23O00161 211 aa14.52□□□□□ -0.09
COL6A3-213ENST00000493475 RASA3Q14644 834 aa14.52□□□□□ -0.09
COL6A3-213ENST00000493475 TDRD7Q8NHU6 1098 aaKnown RBP14.52□□□□□ -0.09
COL6A3-213ENST00000493475 WNK4Q96J92 1243 aa14.52□□□□□ -0.09
COL6A3-213ENST00000493475 PRMT6Q96LA8 375 aaPredicted RBP14.52□□□□□ -0.09
COL6A3-213ENST00000493475 IFIT1P09914 478 aaKnown RBP14.51□□□□□ -0.09
COL6A3-213ENST00000493475 GYG1P46976 350 aa14.51□□□□□ -0.09
COL6A3-213ENST00000493475 EPHA10Q5JZY3 1008 aa14.51□□□□□ -0.09
COL6A3-213ENST00000493475 IFNL1Q8IU54 200 aa14.51□□□□□ -0.09
COL6A3-213ENST00000493475 ERO1AQ96HE7 468 aa14.51□□□□□ -0.09
COL6A3-213ENST00000493475 SUCLG2Q96I99 432 aa14.51□□□□□ -0.09
COL6A3-213ENST00000493475 JAG2Q9Y219 1238 aa14.51□□□□□ -0.09
COL6A3-213ENST00000493475 CSADQ9Y600 493 aa14.51□□□□□ -0.09
COL6A3-213ENST00000493475 UTYO14607 1347 aa14.5□□□□□ -0.09
COL6A3-213ENST00000493475 HDLBPQ00341 1268 aaKnown RBP14.5□□□□□ -0.09
COL6A3-213ENST00000493475 TEKT1Q969V4 418 aa14.5□□□□□ -0.09
COL6A3-213ENST00000493475 BICC1Q9H694 974 aaKnown RBP14.5□□□□□ -0.09
COL6A3-213ENST00000493475 ZNF70Q9UC06 446 aaPredicted RBP14.5□□□□□ -0.09
COL6A3-213ENST00000493475 SUGT1Q9Y2Z0 365 aa14.5□□□□□ -0.09
COL6A3-213ENST00000493475 NBPF7P0C2Y1 421 aaPredicted RBP14.49□□□□□ -0.09
COL6A3-213ENST00000493475 PRR29P0C7W0 189 aa14.49□□□□□ -0.09
COL6A3-213ENST00000493475 CRKP46108 304 aa14.49□□□□□ -0.09
COL6A3-213ENST00000493475 PUM3Q15397 648 aaKnown RBP14.49□□□□□ -0.09
COL6A3-213ENST00000493475 RABL6Q3YEC7 729 aaPredicted RBP14.49□□□□□ -0.09
COL6A3-213ENST00000493475 NBPF12Q5TAG4 269 aaPredicted RBP14.49□□□□□ -0.09
COL6A3-213ENST00000493475 INTS3Q68E01 1043 aaKnown RBP14.49□□□□□ -0.09
COL6A3-213ENST00000493475 DZIP1LQ8IYY4 767 aaKnown RBP14.49□□□□□ -0.09
COL6A3-213ENST00000493475 FAM84BQ96KN1 310 aaPredicted RBP14.49□□□□□ -0.09
COL6A3-213ENST00000493475 KIF16BQ96L93 1317 aa14.48□□□□□ -0.09
COL6A3-213ENST00000493475 PDE8BO95263 885 aa14.48□□□□□ -0.09
COL6A3-213ENST00000493475 CHAF1AQ13111 956 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-213ENST00000493475 TDRD3Q9H7E2 651 aaKnown RBP14.48□□□□□ -0.09
COL6A3-213ENST00000493475 RIPOR2Q9Y4F9 1068 aa14.48□□□□□ -0.09
COL6A3-213ENST00000493475 TRIM17Q9Y577 477 aa14.48□□□□□ -0.09
COL6A3-213ENST00000493475 ZNF646O15015 1829 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-213ENST00000493475 TCP10L2B9ZVM9 353 aa14.47□□□□□ -0.09
COL6A3-213ENST00000493475 SLC5A1P13866 664 aa14.47□□□□□ -0.09
COL6A3-213ENST00000493475 GTF2A2P52657 109 aa14.47□□□□□ -0.09
COL6A3-213ENST00000493475 ALDH1L2Q3SY69 923 aa14.47□□□□□ -0.09
COL6A3-213ENST00000493475 MRPL50Q8N5N7 158 aaKnown RBP14.47□□□□□ -0.09
COL6A3-213ENST00000493475 CLMNQ96JQ2 1002 aa14.47□□□□□ -0.09
COL6A3-213ENST00000493475 GNL3LQ9NVN8 582 aaKnown RBP14.47□□□□□ -0.09
COL6A3-213ENST00000493475 ECM29Q5VYK3 1845 aa14.47□□□□□ -0.09
COL6A3-213ENST00000493475 USP2O75604 605 aaPredicted RBP14.46□□□□□ -0.09
COL6A3-213ENST00000493475 CT47B1P0C2W7 299 aaPredicted RBP14.46□□□□□ -0.09
COL6A3-213ENST00000493475 MAP3K9P80192 1104 aa14.46□□□□□ -0.09
COL6A3-213ENST00000493475 PRPF38BQ5VTL8 546 aaKnown RBP14.46□□□□□ -0.09
COL6A3-213ENST00000493475 DCAF15Q66K64 600 aa14.46□□□□□ -0.09
COL6A3-213ENST00000493475 FBXO33Q7Z6M2 555 aa14.46□□□□□ -0.09
COL6A3-213ENST00000493475 WDR66Q8TBY9 1149 aa14.46□□□□□ -0.09
COL6A3-213ENST00000493475 OPTNQ96CV9 577 aa14.46□□□□□ -0.09
COL6A3-213ENST00000493475 MRIQ9BWK5 157 aa14.46□□□□□ -0.09
COL6A3-213ENST00000493475 PUS3Q9BZE2 481 aaKnown RBP14.46□□□□□ -0.09
COL6A3-213ENST00000493475 SMC4Q9NTJ3 1288 aa14.46□□□□□ -0.09
COL6A3-213ENST00000493475 SLC34A2O95436 690 aa14.45□□□□□ -0.1
COL6A3-213ENST00000493475 LPIN2Q92539 896 aa14.45□□□□□ -0.1
COL6A3-213ENST00000493475 ELP3Q9H9T3 547 aa14.45□□□□□ -0.1
COL6A3-213ENST00000493475 ZFYVE28Q9HCC9 887 aa14.45□□□□□ -0.1
COL6A3-213ENST00000493475 FBXO3Q9UK99 471 aa14.45□□□□□ -0.1
COL6A3-213ENST00000493475 FZD1Q9UP38 647 aa14.45□□□□□ -0.1
COL6A3-213ENST00000493475 PCDHAC2Q9Y5I4 1007 aa14.45□□□□□ -0.1
COL6A3-213ENST00000493475 ZNF521Q96K83 1311 aa14.44□□□□□ -0.1
COL6A3-213ENST00000493475 SSC5DA1L4H1 1573 aa14.44□□□□□ -0.1
COL6A3-213ENST00000493475 UBTFL1P0CB47 393 aaPredicted RBP14.44□□□□□ -0.1
COL6A3-213ENST00000493475 SP3Q02447 781 aa14.44□□□□□ -0.1
COL6A3-213ENST00000493475 KIF22Q14807 665 aa14.44□□□□□ -0.1
COL6A3-213ENST00000493475 FKBP1CQ5VVH2 108 aa14.44□□□□□ -0.1
COL6A3-213ENST00000493475 FAM83AQ86UY5 434 aa14.44□□□□□ -0.1
COL6A3-213ENST00000493475 KAZALD1Q96I82 304 aa14.44□□□□□ -0.1
COL6A3-213ENST00000493475 ZDHHC15Q96MV8 337 aa14.44□□□□□ -0.1
COL6A3-213ENST00000493475 EFCC1Q9HA90 598 aa14.44□□□□□ -0.1
COL6A3-213ENST00000493475 IQSEC3Q9UPP2 1182 aaPredicted RBP14.44□□□□□ -0.1
COL6A3-213ENST00000493475 PDE4DIPQ5VU43 2346 aa14.44□□□□□ -0.1
COL6A3-213ENST00000493475 A0A1B0GUL6 1792 aa14.44□□□□□ -0.1
COL6A3-213ENST00000493475 TESPA1A2RU30 521 aaPredicted RBP14.43□□□□□ -0.1
COL6A3-213ENST00000493475 EYA2O00167 538 aa14.43□□□□□ -0.1
COL6A3-213ENST00000493475 IGF2BP3O00425 579 aaKnown RBP eCLIP14.43□□□□□ -0.1
COL6A3-213ENST00000493475 CETPP11597 493 aa14.43□□□□□ -0.1
COL6A3-213ENST00000493475 CRHR2Q13324 411 aa14.43□□□□□ -0.1
COL6A3-213ENST00000493475 TAF1CQ15572 869 aaPredicted RBP14.43□□□□□ -0.1
COL6A3-213ENST00000493475 LRRC24Q50LG9 513 aa14.43□□□□□ -0.1
COL6A3-213ENST00000493475 NBPF11Q86T75 865 aa14.43□□□□□ -0.1
COL6A3-213ENST00000493475 ANKRD44Q8N8A2 993 aa14.43□□□□□ -0.1
COL6A3-213ENST00000493475 SSH1Q8WYL5 1049 aa14.43□□□□□ -0.1
COL6A3-213ENST00000493475 API5Q9BZZ5 524 aaKnown RBP14.43□□□□□ -0.1
COL6A3-213ENST00000493475 TMEM39BQ9GZU3 492 aa14.43□□□□□ -0.1
COL6A3-213ENST00000493475 CCL15-CCL14A0A0B4J2E2 113 aa14.42□□□□□ -0.1
COL6A3-213ENST00000493475 BCAMP50895 628 aa14.42□□□□□ -0.1
COL6A3-213ENST00000493475 VGLL4Q14135 290 aa14.42□□□□□ -0.1
COL6A3-213ENST00000493475 CCL15Q16663 113 aa14.42□□□□□ -0.1
COL6A3-213ENST00000493475 HHIPL2Q6UWX4 724 aa14.42□□□□□ -0.1
COL6A3-213ENST00000493475 OTOP1Q7RTM1 612 aa14.42□□□□□ -0.1
COL6A3-213ENST00000493475 ERO1BQ86YB8 467 aa14.42□□□□□ -0.1
COL6A3-213ENST00000493475 ZGPATQ8N5A5 531 aaKnown RBP14.42□□□□□ -0.1
COL6A3-213ENST00000493475 GCC1Q96CN9 775 aa14.42□□□□□ -0.1
COL6A3-213ENST00000493475 OTUD5Q96G74 571 aa14.42□□□□□ -0.1
COL6A3-213ENST00000493475 USP44Q9H0E7 712 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms