RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 DZIP1LQ8IYY4 767 aaKnown RBP11.47□□□□□ -0.57
HDAC3-212ENST00000492407 HOOK2Q96ED9 719 aa11.47□□□□□ -0.57
HDAC3-212ENST00000492407 FBXO3Q9UK99 471 aa11.47□□□□□ -0.57
HDAC3-212ENST00000492407 MAST3O60307 1309 aa11.46□□□□□ -0.57
HDAC3-212ENST00000492407 ZBTB22O15209 634 aa11.46□□□□□ -0.57
HDAC3-212ENST00000492407 CRKP46108 304 aa11.46□□□□□ -0.57
HDAC3-212ENST00000492407 SOX10P56693 466 aa11.46□□□□□ -0.57
HDAC3-212ENST00000492407 ARHGEF6Q15052 776 aa11.46□□□□□ -0.57
HDAC3-212ENST00000492407 METTL24Q5JXM2 366 aa11.46□□□□□ -0.57
HDAC3-212ENST00000492407 ANKRD44Q8N8A2 993 aa11.46□□□□□ -0.57
HDAC3-212ENST00000492407 VGLL2Q8N8G2 317 aa11.46□□□□□ -0.57
HDAC3-212ENST00000492407 ERO1AQ96HE7 468 aa11.46□□□□□ -0.57
HDAC3-212ENST00000492407 CLMNQ96JQ2 1002 aa11.46□□□□□ -0.57
HDAC3-212ENST00000492407 TEPSINQ96N21 525 aa11.46□□□□□ -0.57
HDAC3-212ENST00000492407 PUS3Q9BZE2 481 aaKnown RBP11.46□□□□□ -0.57
HDAC3-212ENST00000492407 BICC1Q9H694 974 aaKnown RBP11.46□□□□□ -0.57
HDAC3-212ENST00000492407 HDAC5Q9UQL6 1122 aa11.46□□□□□ -0.57
HDAC3-212ENST00000492407 PCDHAC2Q9Y5I4 1007 aa11.46□□□□□ -0.57
HDAC3-212ENST00000492407 IGF2BP3O00425 579 aaKnown RBP eCLIP11.45□□□□□ -0.58
HDAC3-212ENST00000492407 CT47B1P0C2W7 299 aaPredicted RBP11.45□□□□□ -0.58
HDAC3-212ENST00000492407 MAP3K9P80192 1104 aa11.45□□□□□ -0.58
HDAC3-212ENST00000492407 HHIPL2Q6UWX4 724 aa11.45□□□□□ -0.58
HDAC3-212ENST00000492407 FAM83AQ86UY5 434 aa11.45□□□□□ -0.58
HDAC3-212ENST00000492407 TEKT1Q969V4 418 aa11.45□□□□□ -0.58
HDAC3-212ENST00000492407 ZDHHC15Q96MV8 337 aa11.45□□□□□ -0.58
HDAC3-212ENST00000492407 USP44Q9H0E7 712 aa11.45□□□□□ -0.58
HDAC3-212ENST00000492407 TDRD3Q9H7E2 651 aaKnown RBP11.45□□□□□ -0.58
HDAC3-212ENST00000492407 ZCCHC17Q9NP64 241 aaKnown RBP11.45□□□□□ -0.58
HDAC3-212ENST00000492407 FRAT2O75474 233 aaPredicted RBP11.44□□□□□ -0.58
HDAC3-212ENST00000492407 IFIT1P09914 478 aaKnown RBP11.44□□□□□ -0.58
HDAC3-212ENST00000492407 FGFR2P21802 821 aa11.44□□□□□ -0.58
HDAC3-212ENST00000492407 GTF2A2P52657 109 aa11.44□□□□□ -0.58
HDAC3-212ENST00000492407 SLFN5Q08AF3 891 aa11.44□□□□□ -0.58
HDAC3-212ENST00000492407 PUM3Q15397 648 aaKnown RBP11.44□□□□□ -0.58
HDAC3-212ENST00000492407 PRPF38BQ5VTL8 546 aaKnown RBP11.44□□□□□ -0.58
HDAC3-212ENST00000492407 SSH1Q8WYL5 1049 aa11.44□□□□□ -0.58
HDAC3-212ENST00000492407 R3HDMLQ9H3Y0 253 aa11.44□□□□□ -0.58
HDAC3-212ENST00000492407 JAG2Q9Y219 1238 aa11.44□□□□□ -0.58
HDAC3-212ENST00000492407 AOX1Q06278 1338 aa11.43□□□□□ -0.58
HDAC3-212ENST00000492407 EYA2O00167 538 aa11.43□□□□□ -0.58
HDAC3-212ENST00000492407 WDHD1O75717 1129 aaPredicted RBP11.43□□□□□ -0.58
HDAC3-212ENST00000492407 LRRC24Q50LG9 513 aa11.43□□□□□ -0.58
HDAC3-212ENST00000492407 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.43□□□□□ -0.58
HDAC3-212ENST00000492407 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.43□□□□□ -0.58
HDAC3-212ENST00000492407 WDR66Q8TBY9 1149 aa11.43□□□□□ -0.58
HDAC3-212ENST00000492407 LPIN2Q92539 896 aa11.43□□□□□ -0.58
HDAC3-212ENST00000492407 OPTNQ96CV9 577 aa11.43□□□□□ -0.58
HDAC3-212ENST00000492407 MS4A4AQ96JQ5 239 aa11.43□□□□□ -0.58
HDAC3-212ENST00000492407 TMOD2Q9NZR1 351 aa11.43□□□□□ -0.58
HDAC3-212ENST00000492407 PCDH10Q9P2E7 1040 aa11.43□□□□□ -0.58
HDAC3-212ENST00000492407 FZD1Q9UP38 647 aa11.43□□□□□ -0.58
HDAC3-212ENST00000492407 CSADQ9Y600 493 aa11.43□□□□□ -0.58
HDAC3-212ENST00000492407 A0A1B0GUL6 1792 aa11.43□□□□□ -0.58
HDAC3-212ENST00000492407 TNRC18O15417 2968 aaPredicted RBP11.43□□□□□ -0.58
HDAC3-212ENST00000492407 ECM29Q5VYK3 1845 aa11.42□□□□□ -0.58
HDAC3-212ENST00000492407 TCP10L2B9ZVM9 353 aa11.42□□□□□ -0.58
HDAC3-212ENST00000492407 CIAO1O76071 339 aa11.42□□□□□ -0.58
HDAC3-212ENST00000492407 GJA5P36382 358 aa11.42□□□□□ -0.58
HDAC3-212ENST00000492407 RFX5P48382 616 aaPredicted RBP11.42□□□□□ -0.58
HDAC3-212ENST00000492407 SP3Q02447 781 aa11.42□□□□□ -0.58
HDAC3-212ENST00000492407 CRHR2Q13324 411 aa11.42□□□□□ -0.58
HDAC3-212ENST00000492407 OTOP1Q7RTM1 612 aa11.42□□□□□ -0.58
HDAC3-212ENST00000492407 TRMT2AQ8IZ69 625 aaKnown RBP11.42□□□□□ -0.58
HDAC3-212ENST00000492407 PTPN18Q99952 460 aa11.42□□□□□ -0.58
HDAC3-212ENST00000492407 ELP3Q9H9T3 547 aa11.42□□□□□ -0.58
HDAC3-212ENST00000492407 TAOK2Q9UL54 1235 aa11.42□□□□□ -0.58
HDAC3-212ENST00000492407 PTPN22Q9Y2R2 807 aa11.42□□□□□ -0.58
HDAC3-212ENST00000492407 TRIM17Q9Y577 477 aa11.42□□□□□ -0.58
HDAC3-212ENST00000492407 RPAP1Q9BWH6 1393 aaPredicted RBP11.41□□□□□ -0.58
HDAC3-212ENST00000492407 LAMB1P07942 1786 aa11.41□□□□□ -0.58
HDAC3-212ENST00000492407 SPDYE5A6NIY4 337 aa11.41□□□□□ -0.58
HDAC3-212ENST00000492407 SEMA3EO15041 775 aa11.41□□□□□ -0.58
HDAC3-212ENST00000492407 SLC5A1P13866 664 aa11.41□□□□□ -0.58
HDAC3-212ENST00000492407 BCAMP50895 628 aa11.41□□□□□ -0.58
HDAC3-212ENST00000492407 DCAF15Q66K64 600 aa11.41□□□□□ -0.58
HDAC3-212ENST00000492407 APOBEC3HQ6NTF7 200 aaKnown RBP11.41□□□□□ -0.58
HDAC3-212ENST00000492407 ERO1BQ86YB8 467 aa11.41□□□□□ -0.58
HDAC3-212ENST00000492407 ARMC5Q96C12 935 aa11.41□□□□□ -0.58
HDAC3-212ENST00000492407 TMEM39BQ9GZU3 492 aa11.41□□□□□ -0.58
HDAC3-212ENST00000492407 EFCC1Q9HA90 598 aa11.41□□□□□ -0.58
HDAC3-212ENST00000492407 ZFYVE28Q9HCC9 887 aa11.41□□□□□ -0.58
HDAC3-212ENST00000492407 GNL3LQ9NVN8 582 aaKnown RBP11.41□□□□□ -0.58
HDAC3-212ENST00000492407 GNRH1P01148 92 aa11.4□□□□□ -0.58
HDAC3-212ENST00000492407 CETPP11597 493 aa11.4□□□□□ -0.58
HDAC3-212ENST00000492407 CHAF1AQ13111 956 aaPredicted RBP11.4□□□□□ -0.58
HDAC3-212ENST00000492407 VGLL4Q14135 290 aa11.4□□□□□ -0.58
HDAC3-212ENST00000492407 BRI3BPQ8WY22 251 aa11.4□□□□□ -0.58
HDAC3-212ENST00000492407 SALL1Q9NSC2 1324 aa11.39□□□□□ -0.59
HDAC3-212ENST00000492407 CCL15-CCL14A0A0B4J2E2 113 aa11.39□□□□□ -0.59
HDAC3-212ENST00000492407 PPATQ06203 517 aa11.39□□□□□ -0.59
HDAC3-212ENST00000492407 SNAPC2Q13487 334 aa11.39□□□□□ -0.59
HDAC3-212ENST00000492407 GRIK5Q16478 980 aa11.39□□□□□ -0.59
HDAC3-212ENST00000492407 CCL15Q16663 113 aa11.39□□□□□ -0.59
HDAC3-212ENST00000492407 ATG9AQ7Z3C6 839 aa11.39□□□□□ -0.59
HDAC3-212ENST00000492407 FAM151AQ8WW52 585 aa11.39□□□□□ -0.59
HDAC3-212ENST00000492407 ZNF341Q9BYN7 854 aa11.39□□□□□ -0.59
HDAC3-212ENST00000492407 API5Q9BZZ5 524 aaKnown RBP11.39□□□□□ -0.59
HDAC3-212ENST00000492407 CEP126Q9P2H0 1117 aa11.39□□□□□ -0.59
HDAC3-212ENST00000492407 IQSEC3Q9UPP2 1182 aaPredicted RBP11.39□□□□□ -0.59
HDAC3-212ENST00000492407 ARAP2Q8WZ64 1704 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms