RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 ADORA1P30542 326 aa11.19□□□□□ -0.62
HDAC3-211ENST00000491581 CRKP46108 304 aa11.19□□□□□ -0.62
HDAC3-211ENST00000491581 MIER1Q8N108 512 aa11.19□□□□□ -0.62
HDAC3-211ENST00000491581 MTMR14Q8NCE2 650 aa11.19□□□□□ -0.62
HDAC3-211ENST00000491581 TEPSINQ96N21 525 aa11.19□□□□□ -0.62
HDAC3-211ENST00000491581 MROH5Q6ZUA9 1318 aa11.18□□□□□ -0.62
HDAC3-211ENST00000491581 IGF2BP3O00425 579 aaKnown RBP eCLIP11.18□□□□□ -0.62
HDAC3-211ENST00000491581 CA12O43570 354 aa11.18□□□□□ -0.62
HDAC3-211ENST00000491581 RARSP54136 660 aaKnown RBP11.18□□□□□ -0.62
HDAC3-211ENST00000491581 FKBP1BP68106 108 aa11.18□□□□□ -0.62
HDAC3-211ENST00000491581 SPDYE2Q495Y8 402 aa11.18□□□□□ -0.62
HDAC3-211ENST00000491581 SPRYD7Q5W111 196 aa11.18□□□□□ -0.62
HDAC3-211ENST00000491581 DZIP1LQ8IYY4 767 aaKnown RBP11.18□□□□□ -0.62
HDAC3-211ENST00000491581 ZNF296Q8WUU4 475 aaPredicted RBP11.18□□□□□ -0.62
HDAC3-211ENST00000491581 ELP3Q9H9T3 547 aa11.18□□□□□ -0.62
HDAC3-211ENST00000491581 EYA2O00167 538 aa11.17□□□□□ -0.62
HDAC3-211ENST00000491581 NF2P35240 595 aa11.17□□□□□ -0.62
HDAC3-211ENST00000491581 FKBP1AP62942 108 aaKnown RBP11.17□□□□□ -0.62
HDAC3-211ENST00000491581 DIXDC1Q155Q3 683 aa11.17□□□□□ -0.62
HDAC3-211ENST00000491581 ALDH1L2Q3SY69 923 aa11.17□□□□□ -0.62
HDAC3-211ENST00000491581 ARMC9Q7Z3E5 817 aa11.17□□□□□ -0.62
HDAC3-211ENST00000491581 VPS37DQ86XT2 251 aa11.17□□□□□ -0.62
HDAC3-211ENST00000491581 CLUAP1Q96AJ1 413 aa11.17□□□□□ -0.62
HDAC3-211ENST00000491581 WNK4Q96J92 1243 aa11.17□□□□□ -0.62
HDAC3-211ENST00000491581 SAGE1Q9NXZ1 904 aa11.17□□□□□ -0.62
HDAC3-211ENST00000491581 FRAT2O75474 233 aaPredicted RBP11.16□□□□□ -0.62
HDAC3-211ENST00000491581 ECM2O94769 699 aaPredicted RBP11.16□□□□□ -0.62
HDAC3-211ENST00000491581 UBTFL1P0CB47 393 aaPredicted RBP11.16□□□□□ -0.62
HDAC3-211ENST00000491581 PHKA1P46020 1223 aa11.16□□□□□ -0.62
HDAC3-211ENST00000491581 TM4SF4P48230 202 aa11.16□□□□□ -0.62
HDAC3-211ENST00000491581 SLC10A4Q96EP9 437 aa11.16□□□□□ -0.62
HDAC3-211ENST00000491581 PTPN18Q99952 460 aa11.16□□□□□ -0.62
HDAC3-211ENST00000491581 AK9Q5TCS8 1911 aa11.15□□□□□ -0.62
HDAC3-211ENST00000491581 MYH2Q9UKX2 1941 aa11.15□□□□□ -0.62
HDAC3-211ENST00000491581 MYO5AQ9Y4I1 1855 aaKnown RBP11.15□□□□□ -0.62
HDAC3-211ENST00000491581 GPR25O00155 361 aa11.15□□□□□ -0.62
HDAC3-211ENST00000491581 MYO1BO43795 1136 aa11.15□□□□□ -0.62
HDAC3-211ENST00000491581 PRDX5P30044 214 aa11.15□□□□□ -0.62
HDAC3-211ENST00000491581 PUM3Q15397 648 aaKnown RBP11.15□□□□□ -0.62
HDAC3-211ENST00000491581 APOBEC3HQ6NTF7 200 aaKnown RBP11.15□□□□□ -0.62
HDAC3-211ENST00000491581 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.15□□□□□ -0.62
HDAC3-211ENST00000491581 ZFPM1Q8IX07 1006 aa11.15□□□□□ -0.62
HDAC3-211ENST00000491581 FRAT1Q92837 279 aaPredicted RBP11.15□□□□□ -0.62
HDAC3-211ENST00000491581 SERPINA10Q9UK55 444 aa11.15□□□□□ -0.62
HDAC3-211ENST00000491581 TNRC18O15417 2968 aaPredicted RBP11.14□□□□□ -0.63
HDAC3-211ENST00000491581 CCER2I3L3R5 266 aa11.14□□□□□ -0.63
HDAC3-211ENST00000491581 TRIM27P14373 513 aa11.14□□□□□ -0.63
HDAC3-211ENST00000491581 TIMM10P62072 90 aa11.14□□□□□ -0.63
HDAC3-211ENST00000491581 TCP10Q12799 353 aa11.14□□□□□ -0.63
HDAC3-211ENST00000491581 MAP3K11Q16584 847 aa11.14□□□□□ -0.63
HDAC3-211ENST00000491581 CAVIN4Q5BKX8 364 aa11.14□□□□□ -0.63
HDAC3-211ENST00000491581 MIGA2Q7L4E1 593 aa11.14□□□□□ -0.63
HDAC3-211ENST00000491581 IFNL1Q8IU54 200 aa11.14□□□□□ -0.63
HDAC3-211ENST00000491581 ZKSCAN4Q969J2 545 aaPredicted RBP11.14□□□□□ -0.63
HDAC3-211ENST00000491581 OPTNQ96CV9 577 aa11.14□□□□□ -0.63
HDAC3-211ENST00000491581 PNMA6EA0A0J9YXQ4 647 aa11.13□□□□□ -0.63
HDAC3-211ENST00000491581 SLC5A1P13866 664 aa11.13□□□□□ -0.63
HDAC3-211ENST00000491581 NFIAQ12857 509 aa11.13□□□□□ -0.63
HDAC3-211ENST00000491581 VGLL4Q14135 290 aa11.13□□□□□ -0.63
HDAC3-211ENST00000491581 ATP2B3Q16720 1220 aa11.13□□□□□ -0.63
HDAC3-211ENST00000491581 PI16Q6UXB8 463 aa11.13□□□□□ -0.63
HDAC3-211ENST00000491581 CTU1Q7Z7A3 348 aaKnown RBP11.13□□□□□ -0.63
HDAC3-211ENST00000491581 TEKT1Q969V4 418 aa11.13□□□□□ -0.63
HDAC3-211ENST00000491581 C1orf115Q9H7X2 142 aa11.13□□□□□ -0.63
HDAC3-211ENST00000491581 HPS5Q9UPZ3 1129 aa11.13□□□□□ -0.63
HDAC3-211ENST00000491581 DOCK2Q92608 1830 aa11.13□□□□□ -0.63
HDAC3-211ENST00000491581 PPP1R12BO60237 982 aaPredicted RBP11.12□□□□□ -0.63
HDAC3-211ENST00000491581 IFIT1P09914 478 aaKnown RBP11.12□□□□□ -0.63
HDAC3-211ENST00000491581 TFCP2Q12800 502 aa11.12□□□□□ -0.63
HDAC3-211ENST00000491581 CRHR2Q13324 411 aa11.12□□□□□ -0.63
HDAC3-211ENST00000491581 LPIN2Q92539 896 aa11.12□□□□□ -0.63
HDAC3-211ENST00000491581 OTUD5Q96G74 571 aa11.12□□□□□ -0.63
HDAC3-211ENST00000491581 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.12□□□□□ -0.63
HDAC3-211ENST00000491581 DAGLAQ9Y4D2 1042 aa11.12□□□□□ -0.63
HDAC3-211ENST00000491581 PPP2R3BQ9Y5P8 575 aa11.12□□□□□ -0.63
HDAC3-211ENST00000491581 INPP5BP32019 993 aa11.11□□□□□ -0.63
HDAC3-211ENST00000491581 HNRNPUQ00839 825 aaKnown RBP eCLIP11.11□□□□□ -0.63
HDAC3-211ENST00000491581 MLLT1Q03111 559 aaPredicted RBP11.11□□□□□ -0.63
HDAC3-211ENST00000491581 SUPT20HL1Q3ZLR7 823 aa11.11□□□□□ -0.63
HDAC3-211ENST00000491581 INTS3Q68E01 1043 aaKnown RBP11.11□□□□□ -0.63
HDAC3-211ENST00000491581 CDC42EP5Q6NZY7 148 aa11.11□□□□□ -0.63
HDAC3-211ENST00000491581 TMEM57Q8N5G2 664 aa11.11□□□□□ -0.63
HDAC3-211ENST00000491581 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.11□□□□□ -0.63
HDAC3-211ENST00000491581 CD99L2Q8TCZ2 262 aa11.11□□□□□ -0.63
HDAC3-211ENST00000491581 ZNF384Q8TF68 577 aa11.11□□□□□ -0.63
HDAC3-211ENST00000491581 BRI3BPQ8WY22 251 aa11.11□□□□□ -0.63
HDAC3-211ENST00000491581 MS4A4AQ96JQ5 239 aa11.11□□□□□ -0.63
HDAC3-211ENST00000491581 ZDHHC15Q96MV8 337 aa11.11□□□□□ -0.63
HDAC3-211ENST00000491581 API5Q9BZZ5 524 aaKnown RBP11.11□□□□□ -0.63
HDAC3-211ENST00000491581 SNCAIPQ9Y6H5 919 aa11.11□□□□□ -0.63
HDAC3-211ENST00000491581 SRGAP3O43295 1099 aa11.1□□□□□ -0.63
HDAC3-211ENST00000491581 RLBP1P12271 317 aa11.1□□□□□ -0.63
HDAC3-211ENST00000491581 IREB2P48200 963 aaKnown RBP11.1□□□□□ -0.63
HDAC3-211ENST00000491581 RGS19P49795 217 aa11.1□□□□□ -0.63
HDAC3-211ENST00000491581 SREBF2Q12772 1141 aa11.1□□□□□ -0.63
HDAC3-211ENST00000491581 RASGRF1Q13972 1273 aa11.1□□□□□ -0.63
HDAC3-211ENST00000491581 CCDC102BQ68D86 513 aa11.1□□□□□ -0.63
HDAC3-211ENST00000491581 TBC1D9Q6ZT07 1266 aa11.1□□□□□ -0.63
HDAC3-211ENST00000491581 ANKRD13AQ8IZ07 590 aa11.1□□□□□ -0.63
HDAC3-211ENST00000491581 FAM43AQ8N2R8 423 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms