RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 GATA4P43694 442 aa7.13□□□□□ -1.27
VPS41-214ENST00000490924 CCT4P50991 539 aaKnown RBP7.13□□□□□ -1.27
VPS41-214ENST00000490924 GDF10P55107 478 aa7.13□□□□□ -1.27
VPS41-214ENST00000490924 SEMA3FQ13275 785 aa7.13□□□□□ -1.27
VPS41-214ENST00000490924 ANKRD45Q5TZF3 282 aa7.13□□□□□ -1.27
VPS41-214ENST00000490924 LINC00114Q6XXX2 140 aa7.13□□□□□ -1.27
VPS41-214ENST00000490924 C1orf229Q6ZS94 237 aaPredicted RBP7.13□□□□□ -1.27
VPS41-214ENST00000490924 CHSY3Q70JA7 882 aa7.13□□□□□ -1.27
VPS41-214ENST00000490924 PLEKHM2Q8IWE5 1019 aa7.13□□□□□ -1.27
VPS41-214ENST00000490924 SIRT2Q8IXJ6 389 aa7.13□□□□□ -1.27
VPS41-214ENST00000490924 UBE2Q2Q8WVN8 375 aa7.13□□□□□ -1.27
VPS41-214ENST00000490924 ANP32BQ92688 251 aaKnown RBP7.13□□□□□ -1.27
VPS41-214ENST00000490924 HRH3Q9Y5N1 445 aa7.13□□□□□ -1.27
VPS41-214ENST00000490924 MYO5BQ9ULV0 1848 aa7.13□□□□□ -1.27
VPS41-214ENST00000490924 TOPAZ1Q8N9V7 1692 aa7.12□□□□□ -1.27
VPS41-214ENST00000490924 A0A1W2PNR3 127 aa7.12□□□□□ -1.27
VPS41-214ENST00000490924 DCDC2BA2VCK2 349 aa7.12□□□□□ -1.27
VPS41-214ENST00000490924 C2CD2LO14523 706 aa7.12□□□□□ -1.27
VPS41-214ENST00000490924 BACH1O14867 736 aa7.12□□□□□ -1.27
VPS41-214ENST00000490924 RRP9O43818 475 aaKnown RBP7.12□□□□□ -1.27
VPS41-214ENST00000490924 INHAP05111 366 aa7.12□□□□□ -1.27
VPS41-214ENST00000490924 HSP90AA1P07900 732 aaKnown RBP7.12□□□□□ -1.27
VPS41-214ENST00000490924 TPM2P07951 284 aa7.12□□□□□ -1.27
VPS41-214ENST00000490924 PDIA4P13667 645 aaKnown RBP7.12□□□□□ -1.27
VPS41-214ENST00000490924 WASHC4Q2M389 1173 aa7.12□□□□□ -1.27
VPS41-214ENST00000490924 FAM182BQ5T319 152 aa7.12□□□□□ -1.27
VPS41-214ENST00000490924 INTS4Q96HW7 963 aaKnown RBP7.12□□□□□ -1.27
VPS41-214ENST00000490924 PHACTR3Q96KR7 559 aa7.12□□□□□ -1.27
VPS41-214ENST00000490924 USP26Q9BXU7 913 aa7.12□□□□□ -1.27
VPS41-214ENST00000490924 SRCIN1Q9C0H9 1055 aa7.12□□□□□ -1.27
VPS41-214ENST00000490924 SEMA6BQ9H3T3 888 aa7.12□□□□□ -1.27
VPS41-214ENST00000490924 SUV39H2Q9H5I1 410 aa7.12□□□□□ -1.27
VPS41-214ENST00000490924 SCO2A0A1W2PP80 73 aa7.11□□□□□ -1.27
VPS41-214ENST00000490924 MBD3O95983 291 aa7.11□□□□□ -1.27
VPS41-214ENST00000490924 SPATA31C1P0DKV0 1188 aa7.11□□□□□ -1.27
VPS41-214ENST00000490924 SMTNP53814 917 aa7.11□□□□□ -1.27
VPS41-214ENST00000490924 GLIPR1L2Q4G1C9 344 aa7.11□□□□□ -1.27
VPS41-214ENST00000490924 CD163Q86VB7 1156 aa7.11□□□□□ -1.27
VPS41-214ENST00000490924 NUDT16Q96DE0 195 aaKnown RBP7.11□□□□□ -1.27
VPS41-214ENST00000490924 TRIM44Q96DX7 344 aaPredicted RBP7.11□□□□□ -1.27
VPS41-214ENST00000490924 RRAGDQ9NQL2 400 aaPredicted RBP7.11□□□□□ -1.27
VPS41-214ENST00000490924 SNRKQ9NRH2 765 aa7.11□□□□□ -1.27
VPS41-214ENST00000490924 NDFIP2Q9NV92 336 aa7.11□□□□□ -1.27
VPS41-214ENST00000490924 STK26Q9P289 416 aa7.11□□□□□ -1.27
VPS41-214ENST00000490924 CRB1P82279 1406 aa7.1□□□□□ -1.27
VPS41-214ENST00000490924 ITSN1Q15811 1721 aa7.1□□□□□ -1.27
VPS41-214ENST00000490924 TMEM2Q9UHN6 1383 aa7.1□□□□□ -1.27
VPS41-214ENST00000490924 PLEKHG1Q9ULL1 1385 aa7.1□□□□□ -1.27
VPS41-214ENST00000490924 USP54Q70EL1 1684 aa7.1□□□□□ -1.27
VPS41-214ENST00000490924 ERC2O15083 957 aa7.1□□□□□ -1.27
VPS41-214ENST00000490924 BAG4O95429 457 aaKnown RBP7.1□□□□□ -1.27
VPS41-214ENST00000490924 THBS1P07996 1170 aa7.1□□□□□ -1.27
VPS41-214ENST00000490924 MAPTP10636 758 aaKnown RBP7.1□□□□□ -1.27
VPS41-214ENST00000490924 GSPT1P15170 499 aaKnown RBP7.1□□□□□ -1.27
VPS41-214ENST00000490924 CD33P20138 364 aa7.1□□□□□ -1.27
VPS41-214ENST00000490924 SOX11P35716 441 aa7.1□□□□□ -1.27
VPS41-214ENST00000490924 DGKGP49619 791 aa7.1□□□□□ -1.27
VPS41-214ENST00000490924 UBAP2LQ14157 1087 aaKnown RBP7.1□□□□□ -1.27
VPS41-214ENST00000490924 CEP85Q6P2H3 762 aa7.1□□□□□ -1.27
VPS41-214ENST00000490924 ZSCAN30Q86W11 494 aa7.1□□□□□ -1.27
VPS41-214ENST00000490924 PDLIM2Q96JY6 352 aa7.1□□□□□ -1.27
VPS41-214ENST00000490924 NACC1Q96RE7 527 aa7.1□□□□□ -1.27
VPS41-214ENST00000490924 ZDHHC3Q9NYG2 299 aa7.1□□□□□ -1.27
VPS41-214ENST00000490924 MARK1Q9P0L2 795 aa7.1□□□□□ -1.27
VPS41-214ENST00000490924 SERTAD1Q9UHV2 236 aa7.1□□□□□ -1.27
VPS41-214ENST00000490924 MAP2P11137 1827 aaKnown RBP7.1□□□□□ -1.27
VPS41-214ENST00000490924 USP6P35125 1406 aa7.1□□□□□ -1.27
VPS41-214ENST00000490924 SBNO1A3KN83 1393 aa7.09□□□□□ -1.27
VPS41-214ENST00000490924 CFAP65Q6ZU64 1925 aaKnown RBP7.09□□□□□ -1.27
VPS41-214ENST00000490924 LRRC37A3O60309 1634 aa7.09□□□□□ -1.27
VPS41-214ENST00000490924 GNAI3P08754 354 aa7.09□□□□□ -1.27
VPS41-214ENST00000490924 HOXB7P09629 217 aa7.09□□□□□ -1.27
VPS41-214ENST00000490924 PSME1Q06323 249 aa7.09□□□□□ -1.27
VPS41-214ENST00000490924 CUL4AQ13619 759 aa7.09□□□□□ -1.27
VPS41-214ENST00000490924 LAMC2Q13753 1193 aa7.09□□□□□ -1.27
VPS41-214ENST00000490924 DOC2BQ14184 412 aa7.09□□□□□ -1.27
VPS41-214ENST00000490924 TSPYL6Q8N831 410 aa7.09□□□□□ -1.27
VPS41-214ENST00000490924 C8orf58Q8NAV2 365 aa7.09□□□□□ -1.27
VPS41-214ENST00000490924 GAS2L2Q8NHY3 880 aa7.09□□□□□ -1.27
VPS41-214ENST00000490924 STAP2Q9UGK3 403 aa7.09□□□□□ -1.27
VPS41-214ENST00000490924 CHMP3Q9Y3E7 222 aa7.09□□□□□ -1.27
VPS41-214ENST00000490924 N4BP2Q86UW6 1770 aaPredicted RBP7.09□□□□□ -1.27
VPS41-214ENST00000490924 ANKARQ7Z5J8 1434 aa7.09□□□□□ -1.28
VPS41-214ENST00000490924 METP08581 1390 aa7.08□□□□□ -1.28
VPS41-214ENST00000490924 FLT4P35916 1363 aa7.08□□□□□ -1.28
VPS41-214ENST00000490924 MSH6P52701 1360 aa7.08□□□□□ -1.28
VPS41-214ENST00000490924 SALL3Q9BXA9 1300 aa7.08□□□□□ -1.28
VPS41-214ENST00000490924 CDK2AP1O14519 115 aa7.08□□□□□ -1.28
VPS41-214ENST00000490924 MCCP23508 829 aa7.08□□□□□ -1.28
VPS41-214ENST00000490924 NASPP49321 788 aaPredicted RBP7.08□□□□□ -1.28
VPS41-214ENST00000490924 TNP2Q05952 138 aa7.08□□□□□ -1.28
VPS41-214ENST00000490924 SAFB2Q14151 953 aaKnown RBP eCLIP7.08□□□□□ -1.28
VPS41-214ENST00000490924 ZMYM1Q5SVZ6 1142 aa7.08□□□□□ -1.28
VPS41-214ENST00000490924 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.08□□□□□ -1.28
VPS41-214ENST00000490924 FAM184AQ8NB25 1140 aa7.08□□□□□ -1.28
VPS41-214ENST00000490924 MAP7D2Q96T17 732 aa7.08□□□□□ -1.28
VPS41-214ENST00000490924 PLVAPQ9BX97 442 aa7.08□□□□□ -1.28
VPS41-214ENST00000490924 TBC1D2BQ9UPU7 963 aa7.08□□□□□ -1.28
VPS41-214ENST00000490924 RIMS1Q86UR5 1692 aaKnown RBP7.08□□□□□ -1.28
VPS41-214ENST00000490924 PLEKHG2Q9H7P9 1386 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms