RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 INTS4Q96HW7 963 aaKnown RBP14.47□□□□□ -0.09
HDAC6-230ENST00000488543 PUS7LQ9H0K6 701 aaKnown RBP14.47□□□□□ -0.09
HDAC6-230ENST00000488543 LEMD3Q9Y2U8 911 aa14.47□□□□□ -0.09
HDAC6-230ENST00000488543 COL11A2P13942 1736 aaPredicted RBP14.47□□□□□ -0.09
HDAC6-230ENST00000488543 C6orf229H3BNL8 230 aa14.46□□□□□ -0.09
HDAC6-230ENST00000488543 PSMA5P28066 241 aa14.46□□□□□ -0.09
HDAC6-230ENST00000488543 WASHC4Q2M389 1173 aa14.46□□□□□ -0.09
HDAC6-230ENST00000488543 TBC1D16Q8TBP0 767 aa14.46□□□□□ -0.09
HDAC6-230ENST00000488543 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.46□□□□□ -0.092e-6■■■□□ 16.5
HDAC6-230ENST00000488543 LIMCH1Q9UPQ0 1083 aa14.46□□□□□ -0.09
HDAC6-230ENST00000488543 TCRBV5S4A2TA0A5A2 114 aa14.46□□□□□ -0.1
HDAC6-230ENST00000488543 RPS6KB1P23443 525 aa14.46□□□□□ -0.1
HDAC6-230ENST00000488543 SLC9C2Q5TAH2 1124 aa14.46□□□□□ -0.1
HDAC6-230ENST00000488543 STOX1Q6ZVD7 989 aa14.46□□□□□ -0.1
HDAC6-230ENST00000488543 NAP1L5Q96NT1 182 aaPredicted RBP14.46□□□□□ -0.1
HDAC6-230ENST00000488543 LARP6Q9BRS8 491 aaKnown RBP14.46□□□□□ -0.1
HDAC6-230ENST00000488543 GGA1Q9UJY5 639 aa14.46□□□□□ -0.1
HDAC6-230ENST00000488543 COL1A1P02452 1464 aaPredicted RBP14.45□□□□□ -0.1
HDAC6-230ENST00000488543 LARGE1O95461 756 aa14.45□□□□□ -0.1
HDAC6-230ENST00000488543 PDE6AP16499 860 aa14.45□□□□□ -0.1
HDAC6-230ENST00000488543 UBE3CQ15386 1083 aa14.45□□□□□ -0.1
HDAC6-230ENST00000488543 ZSCAN25Q6NSZ9 544 aa14.45□□□□□ -0.1
HDAC6-230ENST00000488543 ALDH8A1Q9H2A2 487 aaPredicted RBP14.45□□□□□ -0.1
HDAC6-230ENST00000488543 RBM27Q9P2N5 1060 aaKnown RBP14.45□□□□□ -0.1
HDAC6-230ENST00000488543 PPP1R1BQ9UD71 204 aaPredicted RBP14.45□□□□□ -0.1
HDAC6-230ENST00000488543 ABCF2Q9UG63 623 aa14.45□□□□□ -0.1
HDAC6-230ENST00000488543 RIMBP2O15034 1052 aa14.44□□□□□ -0.1
HDAC6-230ENST00000488543 KRT32Q14532 448 aa14.44□□□□□ -0.1
HDAC6-230ENST00000488543 BLOC1S2Q6QNY1 142 aa14.44□□□□□ -0.1
HDAC6-230ENST00000488543 MTFR1LQ9H019 292 aa14.44□□□□□ -0.1
HDAC6-230ENST00000488543 GNL3LQ9NVN8 582 aaKnown RBP14.44□□□□□ -0.1
HDAC6-230ENST00000488543 MYH13Q9UKX3 1938 aa14.44□□□□□ -0.1
HDAC6-230ENST00000488543 CHAF1AQ13111 956 aaPredicted RBP14.44□□□□□ -0.1
HDAC6-230ENST00000488543 CAVIN1Q6NZI2 390 aaKnown RBP14.44□□□□□ -0.1
HDAC6-230ENST00000488543 ZNF532Q9HCE3 1301 aa14.44□□□□□ -0.1
HDAC6-230ENST00000488543 GPAA1O43292 621 aa14.43□□□□□ -0.1
HDAC6-230ENST00000488543 DPEP1P16444 411 aa14.43□□□□□ -0.1
HDAC6-230ENST00000488543 KCNA3P22001 575 aa14.43□□□□□ -0.1
HDAC6-230ENST00000488543 ATP2B4P23634 1241 aa14.43□□□□□ -0.1
HDAC6-230ENST00000488543 STYK1Q6J9G0 422 aa14.43□□□□□ -0.1
HDAC6-230ENST00000488543 MPNDQ8N594 471 aa14.43□□□□□ -0.1
HDAC6-230ENST00000488543 ZDHHC9Q9Y397 364 aa14.43□□□□□ -0.1
HDAC6-230ENST00000488543 TCHHQ07283 1943 aa14.43□□□□□ -0.1
HDAC6-230ENST00000488543 NUCB2P80303 420 aa14.43□□□□□ -0.1
HDAC6-230ENST00000488543 ST3GAL1Q11201 340 aa14.43□□□□□ -0.1
HDAC6-230ENST00000488543 TTLL5Q6EMB2 1281 aa14.43□□□□□ -0.1
HDAC6-230ENST00000488543 TCEANC2Q96MN5 208 aa14.43□□□□□ -0.1
HDAC6-230ENST00000488543 SLX4Q8IY92 1834 aa14.43□□□□□ -0.1
HDAC6-230ENST00000488543 TOB2Q14106 344 aaPredicted RBP14.42□□□□□ -0.1
HDAC6-230ENST00000488543 FOXD4L6Q3SYB3 417 aaPredicted RBP14.42□□□□□ -0.1
HDAC6-230ENST00000488543 DPP8Q6V1X1 898 aaPredicted RBP14.42□□□□□ -0.1
HDAC6-230ENST00000488543 FOXD4L3Q6VB84 417 aaPredicted RBP14.42□□□□□ -0.1
HDAC6-230ENST00000488543 NEK1Q96PY6 1258 aa14.42□□□□□ -0.1
HDAC6-230ENST00000488543 LRP2BPQ9P2M1 347 aa14.42□□□□□ -0.1
HDAC6-230ENST00000488543 CLEC17AQ6ZS10 378 aa14.42□□□□□ -0.1
HDAC6-230ENST00000488543 TMC4Q7Z404 712 aa14.42□□□□□ -0.1
HDAC6-230ENST00000488543 MAGEB6Q8N7X4 407 aa14.42□□□□□ -0.1
HDAC6-230ENST00000488543 C10orf71Q711Q0 1435 aa14.42□□□□□ -0.1
HDAC6-230ENST00000488543 C21orf2O43822 256 aa14.41□□□□□ -0.1
HDAC6-230ENST00000488543 DTNBO60941 627 aa14.41□□□□□ -0.1
HDAC6-230ENST00000488543 PRPF40AO75400 957 aaKnown RBP14.41□□□□□ -0.1
HDAC6-230ENST00000488543 C7orf43Q8WVR3 580 aa14.41□□□□□ -0.1
HDAC6-230ENST00000488543 CNKSR1Q969H4 720 aa14.41□□□□□ -0.1
HDAC6-230ENST00000488543 ZSCAN31Q96LW9 406 aaPredicted RBP14.41□□□□□ -0.1
HDAC6-230ENST00000488543 CD209Q9NNX6 404 aa14.41□□□□□ -0.1
HDAC6-230ENST00000488543 DENND2AQ9ULE3 1009 aa14.41□□□□□ -0.1
HDAC6-230ENST00000488543 TPCN1Q9ULQ1 816 aa14.41□□□□□ -0.1
HDAC6-230ENST00000488543 CACNA1SQ13698 1873 aa14.41□□□□□ -0.1
HDAC6-230ENST00000488543 GOLGA6L22H0YM25 854 aa14.41□□□□□ -0.1
HDAC6-230ENST00000488543 POLD1P28340 1107 aa14.41□□□□□ -0.1
HDAC6-230ENST00000488543 ME3Q16798 604 aa14.41□□□□□ -0.1
HDAC6-230ENST00000488543 SKOR2Q2VWA4 1001 aaPredicted RBP14.41□□□□□ -0.1
HDAC6-230ENST00000488543 SGIP1Q9BQI5 828 aa14.41□□□□□ -0.1
HDAC6-230ENST00000488543 LMBRD1Q9NUN5 540 aa14.41□□□□□ -0.1
HDAC6-230ENST00000488543 ESPNB1AK53 854 aa14.4□□□□□ -0.1
HDAC6-230ENST00000488543 FGAP02671 866 aa14.4□□□□□ -0.1
HDAC6-230ENST00000488543 MAP3K12Q12852 859 aa14.4□□□□□ -0.1
HDAC6-230ENST00000488543 TDRD7Q8NHU6 1098 aaKnown RBP14.4□□□□□ -0.1
HDAC6-230ENST00000488543 SH2B1Q9NRF2 756 aaPredicted RBP14.4□□□□□ -0.1
HDAC6-230ENST00000488543 E7EWF7 191 aa14.4□□□□□ -0.1
HDAC6-230ENST00000488543 PRDX5P30044 214 aa14.4□□□□□ -0.1
HDAC6-230ENST00000488543 CLCN1P35523 988 aa14.4□□□□□ -0.1
HDAC6-230ENST00000488543 DOK7Q18PE1 504 aa14.4□□□□□ -0.1
HDAC6-230ENST00000488543 ADGRA1Q86SQ6 560 aa14.4□□□□□ -0.1
HDAC6-230ENST00000488543 ZNF384Q8TF68 577 aa14.4□□□□□ -0.1
HDAC6-230ENST00000488543 RAI14Q9P0K7 980 aa14.4□□□□□ -0.1
HDAC6-230ENST00000488543 PTGER2P43116 358 aa14.39□□□□□ -0.11
HDAC6-230ENST00000488543 GRIK5Q16478 980 aa14.39□□□□□ -0.11
HDAC6-230ENST00000488543 KLHL40Q2TBA0 621 aa14.39□□□□□ -0.11
HDAC6-230ENST00000488543 C15orf52Q6ZUT6 534 aaKnown RBP14.39□□□□□ -0.11
HDAC6-230ENST00000488543 ZNF804AQ7Z570 1209 aa14.39□□□□□ -0.11
HDAC6-230ENST00000488543 GPT2Q8TD30 523 aa14.39□□□□□ -0.11
HDAC6-230ENST00000488543 STRBPQ96SI9 672 aaKnown RBP14.39□□□□□ -0.11
HDAC6-230ENST00000488543 TMX4Q9H1E5 349 aaPredicted RBP14.39□□□□□ -0.11
HDAC6-230ENST00000488543 CTNNA3Q9UI47 895 aa14.39□□□□□ -0.11
HDAC6-230ENST00000488543 LRRC37AA6NMS7 1700 aa14.39□□□□□ -0.11
HDAC6-230ENST00000488543 NASPP49321 788 aaPredicted RBP14.39□□□□□ -0.11
HDAC6-230ENST00000488543 ANKRD1Q15327 319 aa14.39□□□□□ -0.11
HDAC6-230ENST00000488543 CCDC83Q8IWF9 413 aa14.39□□□□□ -0.11
HDAC6-230ENST00000488543 TTLL6Q8N841 843 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms