RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 SHANK3Q9BYB0 1731 aa20.92■□□□□ 0.94
VIM-206ENST00000487938 IDH1O75874 414 aaKnown RBP20.92■□□□□ 0.94
VIM-206ENST00000487938 RXRAP19793 462 aa20.92■□□□□ 0.94
VIM-206ENST00000487938 PIH1D3Q9NQM4 214 aaKnown RBP20.92■□□□□ 0.94
VIM-206ENST00000487938 RIC1Q4ADV7 1423 aa20.92■□□□□ 0.94
VIM-206ENST00000487938 ABCA3Q99758 1704 aa20.91■□□□□ 0.94
VIM-206ENST00000487938 ANKRD18BA2A2Z9 1011 aa20.91■□□□□ 0.94
VIM-206ENST00000487938 ADD2P35612 726 aa20.91■□□□□ 0.94
VIM-206ENST00000487938 MYSM1Q5VVJ2 828 aa20.91■□□□□ 0.94
VIM-206ENST00000487938 LRRC8AQ8IWT6 810 aa20.91■□□□□ 0.94
VIM-206ENST00000487938 AIFM3Q96NN9 605 aa20.91■□□□□ 0.94
VIM-206ENST00000487938 SPTLC2O15270 562 aa20.9■□□□□ 0.94
VIM-206ENST00000487938 CYB5R4Q7L1T6 521 aa20.9■□□□□ 0.94
VIM-206ENST00000487938 MRFAP1L1Q96HT8 127 aa20.9■□□□□ 0.94
VIM-206ENST00000487938 IRS4O14654 1257 aaPredicted RBP20.9■□□□□ 0.94
VIM-206ENST00000487938 CTSWP56202 376 aa20.9■□□□□ 0.94
VIM-206ENST00000487938 TRDNQ13061 729 aa20.9■□□□□ 0.94
VIM-206ENST00000487938 SYNE3Q6ZMZ3 975 aa20.9■□□□□ 0.94
VIM-206ENST00000487938 FILIP1Q7Z7B0 1213 aa20.9■□□□□ 0.94
VIM-206ENST00000487938 TBC1D10CQ8IV04 446 aa20.9■□□□□ 0.94
VIM-206ENST00000487938 CEP57L1Q8IYX8 460 aa20.9■□□□□ 0.94
VIM-206ENST00000487938 TRMT112Q9UI30 125 aaKnown RBP20.9■□□□□ 0.94
VIM-206ENST00000487938 TOGARAM1Q9Y4F4 1720 aa20.89■□□□□ 0.94
VIM-206ENST00000487938 A0A1W2PQ27 194 aa20.89■□□□□ 0.94
VIM-206ENST00000487938 A0A1W2PQ64 194 aa20.89■□□□□ 0.94
VIM-206ENST00000487938 A0A1W2PQD8 194 aa20.89■□□□□ 0.94
VIM-206ENST00000487938 TPD52L1Q16890 204 aaPredicted RBP20.89■□□□□ 0.94
VIM-206ENST00000487938 HELBQ8NG08 1087 aaPredicted RBP20.89■□□□□ 0.94
VIM-206ENST00000487938 POLR3EQ9NVU0 708 aa20.89■□□□□ 0.94
VIM-206ENST00000487938 TNNT1P13805 278 aa20.89■□□□□ 0.93
VIM-206ENST00000487938 KCNG4Q8TDN1 519 aa20.89■□□□□ 0.93
VIM-206ENST00000487938 SENP2Q9HC62 589 aa20.89■□□□□ 0.93
VIM-206ENST00000487938 INCENPQ9NQS7 918 aa20.89■□□□□ 0.93
VIM-206ENST00000487938 PHKA1P46020 1223 aa20.88■□□□□ 0.93
VIM-206ENST00000487938 KIF23Q02241 960 aaPredicted RBP20.88■□□□□ 0.93
VIM-206ENST00000487938 SLC4A9Q96Q91 983 aa20.88■□□□□ 0.93
VIM-206ENST00000487938 CDHR2Q9BYE9 1310 aa20.88■□□□□ 0.93
VIM-206ENST00000487938 ZNF532Q9HCE3 1301 aa20.88■□□□□ 0.93
VIM-206ENST00000487938 BIN1O00499 593 aa20.88■□□□□ 0.93
VIM-206ENST00000487938 BRAPQ7Z569 592 aa20.88■□□□□ 0.93
VIM-206ENST00000487938 KIAA1468Q9P260 1216 aa20.88■□□□□ 0.93
VIM-206ENST00000487938 KAT6BQ8WYB5 2073 aa20.87■□□□□ 0.93
VIM-206ENST00000487938 PDE8BO95263 885 aa20.87■□□□□ 0.93
VIM-206ENST00000487938 YEATS4O95619 227 aa20.87■□□□□ 0.93
VIM-206ENST00000487938 MARCKSP29966 332 aaPredicted RBP20.87■□□□□ 0.93
VIM-206ENST00000487938 DPCR1Q3MIW9 517 aa20.87■□□□□ 0.93
VIM-206ENST00000487938 ANO1Q5XXA6 986 aa20.87■□□□□ 0.93
VIM-206ENST00000487938 CCDC102BQ68D86 513 aa20.87■□□□□ 0.93
VIM-206ENST00000487938 VGLL2Q8N8G2 317 aa20.87■□□□□ 0.93
VIM-206ENST00000487938 NAT10Q9H0A0 1025 aaKnown RBP20.87■□□□□ 0.93
VIM-206ENST00000487938 WWC3Q9ULE0 1092 aa20.87■□□□□ 0.93
VIM-206ENST00000487938 TBC1D2BQ9UPU7 963 aa20.87■□□□□ 0.93
VIM-206ENST00000487938 B4E1Z4 1266 aa20.87■□□□□ 0.93
VIM-206ENST00000487938 ZNF202O95125 648 aa20.87■□□□□ 0.93
VIM-206ENST00000487938 ABCC12Q96J65 1359 aa20.87■□□□□ 0.93
VIM-206ENST00000487938 ZMYND15Q9H091 742 aa20.87■□□□□ 0.93
VIM-206ENST00000487938 ANGEL1Q9UNK9 670 aaKnown RBP20.87■□□□□ 0.93
VIM-206ENST00000487938 METAP2P50579 478 aaKnown RBP eCLIP20.86■□□□□ 0.934e-12■■■□□ 16.4
VIM-206ENST00000487938 ZRSR1Q15695 479 aaKnown RBP20.86■□□□□ 0.93
VIM-206ENST00000487938 PHKBQ93100 1093 aa20.86■□□□□ 0.93
VIM-206ENST00000487938 ALG1Q9BT22 464 aa20.86■□□□□ 0.93
VIM-206ENST00000487938 ZBTB1Q9Y2K1 713 aa20.86■□□□□ 0.93
VIM-206ENST00000487938 AKAP11Q9UKA4 1901 aa20.86■□□□□ 0.93
VIM-206ENST00000487938 USP27XA6NNY8 438 aa20.85■□□□□ 0.93
VIM-206ENST00000487938 CYP19A1P11511 503 aaPredicted RBP20.85■□□□□ 0.93
VIM-206ENST00000487938 CDC27P30260 824 aa20.85■□□□□ 0.93
VIM-206ENST00000487938 TTF1Q15361 905 aaPredicted RBP20.85■□□□□ 0.93
VIM-206ENST00000487938 ISM2Q6H9L7 571 aa20.85■□□□□ 0.93
VIM-206ENST00000487938 SYTL4Q96C24 671 aaPredicted RBP20.85■□□□□ 0.93
VIM-206ENST00000487938 SNAP23O00161 211 aa20.85■□□□□ 0.93
VIM-206ENST00000487938 WDHD1O75717 1129 aaPredicted RBP20.85■□□□□ 0.93
VIM-206ENST00000487938 SKILP12757 684 aa20.85■□□□□ 0.93
VIM-206ENST00000487938 PDE6AP16499 860 aa20.85■□□□□ 0.93
VIM-206ENST00000487938 CCDC94Q9BW85 323 aaPredicted RBP20.85■□□□□ 0.93
VIM-206ENST00000487938 BTG4Q9NY30 223 aa20.85■□□□□ 0.93
VIM-206ENST00000487938 NHSL1Q5SYE7 1610 aa20.85■□□□□ 0.93
VIM-206ENST00000487938 MYH7P12883 1935 aa20.85■□□□□ 0.93
VIM-206ENST00000487938 ZMYM6O95789 1325 aa20.84■□□□□ 0.93
VIM-206ENST00000487938 NEDD4P46934 1319 aa20.84■□□□□ 0.93
VIM-206ENST00000487938 WDR19Q8NEZ3 1342 aa20.84■□□□□ 0.93
VIM-206ENST00000487938 CCDC69A6NI79 296 aa20.84■□□□□ 0.93
VIM-206ENST00000487938 SH2B2O14492 632 aaPredicted RBP20.84■□□□□ 0.93
VIM-206ENST00000487938 SLC3A2P08195 630 aaKnown RBP20.84■□□□□ 0.93
VIM-206ENST00000487938 UBE3CQ15386 1083 aa20.84■□□□□ 0.93
VIM-206ENST00000487938 AXDND1Q5T1B0 1012 aaPredicted RBP20.84■□□□□ 0.93
VIM-206ENST00000487938 MICU3Q86XE3 530 aa20.84■□□□□ 0.93
VIM-206ENST00000487938 MYO5AQ9Y4I1 1855 aaKnown RBP20.84■□□□□ 0.93
VIM-206ENST00000487938 PFKFB1P16118 471 aa20.84■□□□□ 0.93
VIM-206ENST00000487938 ZNF592Q92610 1267 aa20.84■□□□□ 0.93
VIM-206ENST00000487938 ZNF512BQ96KM6 892 aaPredicted RBP20.84■□□□□ 0.93
VIM-206ENST00000487938 MYL10Q9BUA6 226 aa20.84■□□□□ 0.93
VIM-206ENST00000487938 CTIFO43310 598 aaKnown RBP20.83■□□□□ 0.93
VIM-206ENST00000487938 PDE8AO60658 829 aa20.83■□□□□ 0.93
VIM-206ENST00000487938 NFXL1Q6ZNB6 911 aa20.83■□□□□ 0.93
VIM-206ENST00000487938 BCL11BQ9C0K0 894 aaPredicted RBP20.83■□□□□ 0.93
VIM-206ENST00000487938 KRT40Q6A162 431 aa20.83■□□□□ 0.92
VIM-206ENST00000487938 APOA5Q6Q788 366 aa20.83■□□□□ 0.92
VIM-206ENST00000487938 AIDAQ96BJ3 306 aa20.83■□□□□ 0.92
VIM-206ENST00000487938 TCRBV5S4A2TA0A5A2 114 aa20.82■□□□□ 0.92
VIM-206ENST00000487938 UBE2Q2LH0YL09 131 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms