RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 VPS33BQ9H267 617 aa9.95□□□□□ -0.82
USP4-210ENST00000483212 FOXD4L1Q9NU39 408 aa9.95□□□□□ -0.82
USP4-210ENST00000483212 JAG2Q9Y219 1238 aa9.95□□□□□ -0.82
USP4-210ENST00000483212 BCS1LQ9Y276 419 aa9.95□□□□□ -0.82
USP4-210ENST00000483212 ZNF532Q9HCE3 1301 aa9.95□□□□□ -0.82
USP4-210ENST00000483212 SCN9AQ15858 1988 aa9.95□□□□□ -0.82
USP4-210ENST00000483212 YDJCA8MPS7 323 aa9.94□□□□□ -0.82
USP4-210ENST00000483212 FOXP2O15409 715 aa9.94□□□□□ -0.82
USP4-210ENST00000483212 ECE2O60344 883 aa9.94□□□□□ -0.82
USP4-210ENST00000483212 FRAT2O75474 233 aaPredicted RBP9.94□□□□□ -0.82
USP4-210ENST00000483212 REC8O95072 547 aa9.94□□□□□ -0.82
USP4-210ENST00000483212 PRELPP51888 382 aa9.94□□□□□ -0.82
USP4-210ENST00000483212 PTH1RQ03431 593 aa9.94□□□□□ -0.82
USP4-210ENST00000483212 MAP3K12Q12852 859 aa9.94□□□□□ -0.82
USP4-210ENST00000483212 LRRFIP1Q32MZ4 808 aaKnown RBP9.94□□□□□ -0.82
USP4-210ENST00000483212 ZSCAN25Q6NSZ9 544 aa9.94□□□□□ -0.82
USP4-210ENST00000483212 CCDC129Q6ZRS4 1044 aa9.94□□□□□ -0.82
USP4-210ENST00000483212 PODNQ7Z5L7 613 aa9.94□□□□□ -0.82
USP4-210ENST00000483212 ADGRA1Q86SQ6 560 aa9.94□□□□□ -0.82
USP4-210ENST00000483212 CERS5Q8N5B7 392 aa9.94□□□□□ -0.82
USP4-210ENST00000483212 MAGEB6Q8N7X4 407 aa9.94□□□□□ -0.82
USP4-210ENST00000483212 NSUN4Q96CB9 384 aaKnown RBP9.94□□□□□ -0.82
USP4-210ENST00000483212 PUS7LQ9H0K6 701 aaKnown RBP9.94□□□□□ -0.82
USP4-210ENST00000483212 DBNDD1Q9H9R9 158 aa9.94□□□□□ -0.82
USP4-210ENST00000483212 ZNF277Q9NRM2 450 aaPredicted RBP9.94□□□□□ -0.82
USP4-210ENST00000483212 ABCF2Q9UG63 623 aa9.94□□□□□ -0.82
USP4-210ENST00000483212 PSME4Q14997 1843 aa9.93□□□□□ -0.82
USP4-210ENST00000483212 CCDC171Q6TFL3 1326 aa9.93□□□□□ -0.82
USP4-210ENST00000483212 PPIP5K2O43314 1243 aa9.93□□□□□ -0.82
USP4-210ENST00000483212 EIF5BO60841 1220 aaKnown RBP9.93□□□□□ -0.82
USP4-210ENST00000483212 FKBP1AP62942 108 aaKnown RBP9.93□□□□□ -0.82
USP4-210ENST00000483212 GTF2IP78347 998 aa9.93□□□□□ -0.82
USP4-210ENST00000483212 MECOMQ03112 1051 aa9.93□□□□□ -0.82
USP4-210ENST00000483212 DACT2Q5SW24 774 aa9.93□□□□□ -0.82
USP4-210ENST00000483212 TMED8Q6PL24 325 aaPredicted RBP9.93□□□□□ -0.82
USP4-210ENST00000483212 ERICH6Q7L0X2 663 aa9.93□□□□□ -0.82
USP4-210ENST00000483212 IL17RAQ96F46 866 aa9.93□□□□□ -0.82
USP4-210ENST00000483212 C22orf23Q9BZE7 217 aa9.93□□□□□ -0.82
USP4-210ENST00000483212 TAOK3Q9H2K8 898 aa9.93□□□□□ -0.82
USP4-210ENST00000483212 ANO2Q9NQ90 1003 aa9.93□□□□□ -0.82
USP4-210ENST00000483212 KCNQ5Q9NR82 932 aa9.93□□□□□ -0.82
USP4-210ENST00000483212 LRP2BPQ9P2M1 347 aa9.93□□□□□ -0.82
USP4-210ENST00000483212 RBM19Q9Y4C8 960 aaKnown RBP9.93□□□□□ -0.82
USP4-210ENST00000483212 IARSP41252 1262 aaKnown RBP9.92□□□□□ -0.82
USP4-210ENST00000483212 RASSF7Q02833 373 aa9.92□□□□□ -0.82
USP4-210ENST00000483212 VPS53Q5VIR6 699 aa9.92□□□□□ -0.82
USP4-210ENST00000483212 STRIP1Q5VSL9 837 aa9.92□□□□□ -0.82
USP4-210ENST00000483212 ZGPATQ8N5A5 531 aaKnown RBP9.92□□□□□ -0.82
USP4-210ENST00000483212 TBC1D22AQ8WUA7 517 aa9.92□□□□□ -0.82
USP4-210ENST00000483212 MAP4K1Q92918 833 aa9.92□□□□□ -0.82
USP4-210ENST00000483212 KCNB2Q92953 911 aa9.92□□□□□ -0.82
USP4-210ENST00000483212 KIF2CQ99661 725 aa9.92□□□□□ -0.82
USP4-210ENST00000483212 RIOK1Q9BRS2 568 aaKnown RBP9.92□□□□□ -0.82
USP4-210ENST00000483212 MXD3Q9BW11 206 aa9.92□□□□□ -0.82
USP4-210ENST00000483212 RAI14Q9P0K7 980 aa9.92□□□□□ -0.82
USP4-210ENST00000483212 SRCAPQ6ZRS2 3230 aa9.92□□□□□ -0.82
USP4-210ENST00000483212 C19orf67A6NJJ6 358 aa9.91□□□□□ -0.82
USP4-210ENST00000483212 GPAA1O43292 621 aa9.91□□□□□ -0.82
USP4-210ENST00000483212 LDHBP07195 334 aaKnown RBP9.91□□□□□ -0.82
USP4-210ENST00000483212 CYP7A1P22680 504 aa9.91□□□□□ -0.82
USP4-210ENST00000483212 HSPA4P34932 840 aa9.91□□□□□ -0.82
USP4-210ENST00000483212 NECTIN1Q15223 517 aa9.91□□□□□ -0.82
USP4-210ENST00000483212 MFSD14BQ5SR56 506 aa9.91□□□□□ -0.82
USP4-210ENST00000483212 SPTY2D1Q68D10 685 aaPredicted RBP9.91□□□□□ -0.82
USP4-210ENST00000483212 TTLL5Q6EMB2 1281 aa9.91□□□□□ -0.82
USP4-210ENST00000483212 NAA16Q6N069 864 aaPredicted RBP9.91□□□□□ -0.82
USP4-210ENST00000483212 LARGE2Q8N3Y3 721 aa9.91□□□□□ -0.82
USP4-210ENST00000483212 STRBPQ96SI9 672 aaKnown RBP9.91□□□□□ -0.82
USP4-210ENST00000483212 DSCC1Q9BVC3 393 aa9.91□□□□□ -0.82
USP4-210ENST00000483212 UPF2Q9HAU5 1272 aaKnown RBP9.91□□□□□ -0.82
USP4-210ENST00000483212 PALD1Q9ULE6 856 aa9.91□□□□□ -0.82
USP4-210ENST00000483212 SUGT1Q9Y2Z0 365 aa9.91□□□□□ -0.82
USP4-210ENST00000483212 GAKO14976 1311 aa9.9□□□□□ -0.82
USP4-210ENST00000483212 USP17L3A6NCW0 530 aa9.9□□□□□ -0.82
USP4-210ENST00000483212 USP17L4A6NCW7 530 aa9.9□□□□□ -0.82
USP4-210ENST00000483212 MBD4O95243 580 aa9.9□□□□□ -0.82
USP4-210ENST00000483212 HSPD1P10809 573 aaKnown RBP9.9□□□□□ -0.82
USP4-210ENST00000483212 YBX3P16989 372 aaKnown RBP eCLIP9.9□□□□□ -0.82
USP4-210ENST00000483212 USP17L1Q7RTZ2 530 aa9.9□□□□□ -0.82
USP4-210ENST00000483212 LCORLQ8N3X6 602 aa9.9□□□□□ -0.82
USP4-210ENST00000483212 FAM163AQ96GL9 167 aaPredicted RBP9.9□□□□□ -0.82
USP4-210ENST00000483212 ZNRF3Q9ULT6 936 aa9.9□□□□□ -0.82
USP4-210ENST00000483212 RBM8AQ9Y5S9 174 aaKnown RBP9.9□□□□□ -0.82
USP4-210ENST00000483212 CCDC88AQ3V6T2 1871 aa9.89□□□□□ -0.83
USP4-210ENST00000483212 MROH7-TTC4A0A0A0MT08 1334 aa9.89□□□□□ -0.83
USP4-210ENST00000483212 ADAMTSL1Q8N6G6 1762 aa9.89□□□□□ -0.83
USP4-210ENST00000483212 G3V3G9 751 aa9.89□□□□□ -0.83
USP4-210ENST00000483212 DYNLL1P63167 89 aaKnown RBP9.89□□□□□ -0.83
USP4-210ENST00000483212 DIXDC1Q155Q3 683 aa9.89□□□□□ -0.83
USP4-210ENST00000483212 DCAF8Q5TAQ9 597 aa9.89□□□□□ -0.83
USP4-210ENST00000483212 KIAA1211Q6ZU35 1233 aa9.89□□□□□ -0.83
USP4-210ENST00000483212 DZIP1Q86YF9 867 aaKnown RBP9.89□□□□□ -0.83
USP4-210ENST00000483212 MIGA1Q8NAN2 632 aa9.89□□□□□ -0.83
USP4-210ENST00000483212 GMLQ99445 158 aa9.89□□□□□ -0.83
USP4-210ENST00000483212 ARMT1Q9H993 441 aa9.89□□□□□ -0.83
USP4-210ENST00000483212 EPB41L4AQ9HCS5 686 aaPredicted RBP9.89□□□□□ -0.83
USP4-210ENST00000483212 ZMYM6O95789 1325 aa9.88□□□□□ -0.83
USP4-210ENST00000483212 GPR75-ASB3A0A0A6YYF3 556 aa9.88□□□□□ -0.83
USP4-210ENST00000483212 MAGEB6P1A0A0J9YX57 407 aa9.88□□□□□ -0.83
USP4-210ENST00000483212 GSG1L2A8MUP6 293 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms