RNA–Protein interactions for RNA: ENST00000478999.1

VPS45-208, Transcript of vacuolar protein sorting 45 homolog, human

TSL 2

Gene VPS45, Length 468 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS45-208	ENST00000478999	MKRN3	Q13064	507 aa	Known RBP	10.16	□□□□□ -0.78
VPS45-208	ENST00000478999	TRIM28	Q13263	835 aa	Known RBP	10.16	□□□□□ -0.78
VPS45-208	ENST00000478999	MTX1	Q13505	466 aa		10.16	□□□□□ -0.78
VPS45-208	ENST00000478999	POLA2	Q14181	598 aa		10.16	□□□□□ -0.78
VPS45-208	ENST00000478999	DOK7	Q18PE1	504 aa		10.16	□□□□□ -0.78
VPS45-208	ENST00000478999	L1TD1	Q5T7N2	865 aa	Known RBP	10.16	□□□□□ -0.78
VPS45-208	ENST00000478999	DNAAF4	Q8WXU2	420 aa		10.16	□□□□□ -0.78
VPS45-208	ENST00000478999	JARID2	Q92833	1246 aa	Predicted RBP	10.16	□□□□□ -0.78
VPS45-208	ENST00000478999	IL17RA	Q96F46	866 aa		10.16	□□□□□ -0.78
VPS45-208	ENST00000478999	CDC5L	Q99459	802 aa	Known RBP	10.16	□□□□□ -0.78
VPS45-208	ENST00000478999	METTL22	Q9BUU2	404 aa	Predicted RBP	10.16	□□□□□ -0.78
VPS45-208	ENST00000478999	CFHR5	Q9BXR6	569 aa		10.16	□□□□□ -0.78
VPS45-208	ENST00000478999	USP26	Q9BXU7	913 aa		10.16	□□□□□ -0.78
VPS45-208	ENST00000478999	POLL	Q9UGP5	575 aa		10.16	□□□□□ -0.78
VPS45-208	ENST00000478999	GGA1	Q9UJY5	639 aa		10.16	□□□□□ -0.78
VPS45-208	ENST00000478999	CEP290	O15078	2479 aa		10.16	□□□□□ -0.78
VPS45-208	ENST00000478999	VIL1	P09327	827 aa	Known RBP	10.15	□□□□□ -0.78
VPS45-208	ENST00000478999	MX1	P20591	662 aa		10.15	□□□□□ -0.78
VPS45-208	ENST00000478999	SCARF1	Q14162	830 aa		10.15	□□□□□ -0.78
VPS45-208	ENST00000478999	SKOR2	Q2VWA4	1001 aa	Predicted RBP	10.15	□□□□□ -0.78
VPS45-208	ENST00000478999	KSR2	Q6VAB6	950 aa		10.15	□□□□□ -0.78
VPS45-208	ENST00000478999	CLEC17A	Q6ZS10	378 aa		10.15	□□□□□ -0.78
VPS45-208	ENST00000478999	FBXW7	Q969H0	707 aa		10.15	□□□□□ -0.78
VPS45-208	ENST00000478999	USP44	Q9H0E7	712 aa		10.15	□□□□□ -0.78
VPS45-208	ENST00000478999	SEC31B	Q9NQW1	1179 aa		10.15	□□□□□ -0.78
VPS45-208	ENST00000478999	AK9	Q5TCS8	1911 aa		10.15	□□□□□ -0.79
VPS45-208	ENST00000478999	ZNF609	O15014	1411 aa		10.15	□□□□□ -0.79
VPS45-208	ENST00000478999	PI4KAP2	A4QPH2	592 aa		10.14	□□□□□ -0.79
VPS45-208	ENST00000478999	DLL1	O00548	723 aa		10.14	□□□□□ -0.79
VPS45-208	ENST00000478999	HSP90AA1	P07900	732 aa	Known RBP	10.14	□□□□□ -0.79
VPS45-208	ENST00000478999	EN2	P19622	333 aa	Predicted RBP	10.14	□□□□□ -0.79
VPS45-208	ENST00000478999	ZNF280A	P59817	542 aa	Predicted RBP	10.14	□□□□□ -0.79
VPS45-208	ENST00000478999	RAB3GAP1	Q15042	981 aa		10.14	□□□□□ -0.79
VPS45-208	ENST00000478999	PRAMEF18	Q5VWM3	479 aa		10.14	□□□□□ -0.79
VPS45-208	ENST00000478999	OTOP1	Q7RTM1	612 aa		10.14	□□□□□ -0.79
VPS45-208	ENST00000478999	PI4KAP1	Q8N8J0	262 aa		10.14	□□□□□ -0.79
VPS45-208	ENST00000478999	KIF1BP	Q96EK5	621 aa		10.14	□□□□□ -0.79
VPS45-208	ENST00000478999	CWC22	Q9HCG8	908 aa	Known RBP	10.14	□□□□□ -0.79
VPS45-208	ENST00000478999	TRIM17	Q9Y577	477 aa		10.14	□□□□□ -0.79
VPS45-208	ENST00000478999	LRRFIP2	Q9Y608	721 aa	Known RBP	10.14	□□□□□ -0.79
VPS45-208	ENST00000478999	XDH	P47989	1333 aa		10.13	□□□□□ -0.79
VPS45-208	ENST00000478999	PITPNM2	Q9BZ72	1349 aa		10.13	□□□□□ -0.79
VPS45-208	ENST00000478999	GOLGA6L22	H0YM25	854 aa		10.13	□□□□□ -0.79
VPS45-208	ENST00000478999	IGHMBP2	P38935	993 aa	Known RBP	10.13	□□□□□ -0.79
VPS45-208	ENST00000478999	CTSW	P56202	376 aa		10.13	□□□□□ -0.79
VPS45-208	ENST00000478999	NUCB2	P80303	420 aa		10.13	□□□□□ -0.79
VPS45-208	ENST00000478999	BEND3	Q5T5X7	828 aa		10.13	□□□□□ -0.79
VPS45-208	ENST00000478999	UBE3B	Q7Z3V4	1068 aa		10.13	□□□□□ -0.79
VPS45-208	ENST00000478999	ERC1	Q8IUD2	1116 aa		10.13	□□□□□ -0.79
VPS45-208	ENST00000478999	TBC1D16	Q8TBP0	767 aa		10.13	□□□□□ -0.79
VPS45-208	ENST00000478999	BCL11A	Q9H165	835 aa		10.13	□□□□□ -0.79
VPS45-208	ENST00000478999	TTC41P	Q6P2S7	1318 aa		10.12	□□□□□ -0.79
VPS45-208	ENST00000478999	KCNJ4	P48050	445 aa		10.12	□□□□□ -0.79
VPS45-208	ENST00000478999	SREBF2	Q12772	1141 aa		10.12	□□□□□ -0.79
VPS45-208	ENST00000478999	CWF19L2	Q2TBE0	894 aa	Known RBP	10.12	□□□□□ -0.79
VPS45-208	ENST00000478999	OTUD5	Q96G74	571 aa		10.12	□□□□□ -0.79
VPS45-208	ENST00000478999	CHMP3	Q9Y3E7	222 aa		10.12	□□□□□ -0.79
VPS45-208	ENST00000478999	COL6A3	P12111	3177 aa		10.12	□□□□□ -0.79
VPS45-208	ENST00000478999	ZSWIM8	A7E2V4	1837 aa		10.12	□□□□□ -0.79
VPS45-208	ENST00000478999	UTY	O14607	1347 aa		10.11	□□□□□ -0.79
VPS45-208	ENST00000478999	ARAP2	Q8WZ64	1704 aa		10.11	□□□□□ -0.79
VPS45-208	ENST00000478999	NEURL1B	A8MQ27	555 aa		10.11	□□□□□ -0.79
VPS45-208	ENST00000478999	SMARCA5	O60264	1052 aa	Predicted RBP	10.11	□□□□□ -0.79
VPS45-208	ENST00000478999	ATP2B4	P23634	1241 aa		10.11	□□□□□ -0.79
VPS45-208	ENST00000478999	PTPN12	Q05209	780 aa	Known RBP	10.11	□□□□□ -0.79
VPS45-208	ENST00000478999	TTLL12	Q14166	644 aa	Predicted RBP	10.11	□□□□□ -0.79
VPS45-208	ENST00000478999	RSBN1L	Q6PCB5	846 aa	Predicted RBP	10.11	□□□□□ -0.79
VPS45-208	ENST00000478999	LINS1	Q8NG48	757 aa		10.11	□□□□□ -0.79
VPS45-208	ENST00000478999	OTUD7A	Q8TE49	926 aa	Predicted RBP	10.11	□□□□□ -0.79
VPS45-208	ENST00000478999	ARMC5	Q96C12	935 aa		10.11	□□□□□ -0.79
VPS45-208	ENST00000478999	GPATCH3	Q96I76	525 aa		10.11	□□□□□ -0.79
VPS45-208	ENST00000478999	GML	Q99445	158 aa		10.11	□□□□□ -0.79
VPS45-208	ENST00000478999	MPHOSPH8	Q99549	860 aa		10.11	□□□□□ -0.79
VPS45-208	ENST00000478999	ESYT1	Q9BSJ8	1104 aa		10.11	□□□□□ -0.79
VPS45-208	ENST00000478999	MYOZ2	Q9NPC6	264 aa		10.11	□□□□□ -0.79
VPS45-208	ENST00000478999	PODXL2	Q9NZ53	605 aa		10.11	□□□□□ -0.79
VPS45-208	ENST00000478999	EXOC6B	Q9Y2D4	811 aa		10.11	□□□□□ -0.79
VPS45-208	ENST00000478999	OTOF	Q9HC10	1997 aa		10.1	□□□□□ -0.79
VPS45-208	ENST00000478999	PNMA6E	A0A0J9YXQ4	647 aa		10.1	□□□□□ -0.79
VPS45-208	ENST00000478999	CAP1	Q01518	475 aa		10.1	□□□□□ -0.79
VPS45-208	ENST00000478999	NBPF9	Q3BBW0	867 aa		10.1	□□□□□ -0.79
VPS45-208	ENST00000478999	AGBL3	Q8NEM8	1001 aa		10.1	□□□□□ -0.79
VPS45-208	ENST00000478999	PTPN22	Q9Y2R2	807 aa		10.1	□□□□□ -0.79
VPS45-208	ENST00000478999	SRGAP3	O43295	1099 aa		10.09	□□□□□ -0.79
VPS45-208	ENST00000478999	IGKV5-2	P06315	115 aa		10.09	□□□□□ -0.79
VPS45-208	ENST00000478999	USP17L8	P0C7I0	530 aa		10.09	□□□□□ -0.79
VPS45-208	ENST00000478999	TAF7L	Q5H9L4	462 aa		10.09	□□□□□ -0.79
VPS45-208	ENST00000478999	SPRYD7	Q5W111	196 aa		10.09	□□□□□ -0.79
VPS45-208	ENST00000478999	SLC17A8	Q8NDX2	589 aa		10.09	□□□□□ -0.79
VPS45-208	ENST00000478999	RHPN1	Q8TCX5	695 aa		10.09	□□□□□ -0.79
VPS45-208	ENST00000478999	CD99L2	Q8TCZ2	262 aa		10.09	□□□□□ -0.79
VPS45-208	ENST00000478999	GREM2	Q9H772	168 aa		10.09	□□□□□ -0.79
VPS45-208	ENST00000478999	MED23	Q9ULK4	1368 aa		10.09	□□□□□ -0.79
VPS45-208	ENST00000478999	ANKRD18B	A2A2Z9	1011 aa		10.08	□□□□□ -0.8
VPS45-208	ENST00000478999	USP17L3	A6NCW0	530 aa		10.08	□□□□□ -0.8
VPS45-208	ENST00000478999	USP17L4	A6NCW7	530 aa		10.08	□□□□□ -0.8
VPS45-208	ENST00000478999		H0YGN5	161 aa		10.08	□□□□□ -0.8
VPS45-208	ENST00000478999	APBB1	O00213	710 aa		10.08	□□□□□ -0.8
VPS45-208	ENST00000478999	TRAK2	O60296	914 aa		10.08	□□□□□ -0.8
VPS45-208	ENST00000478999	SURF6	O75683	361 aa	Known RBP	10.08	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms