RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 EGFLAMQ63HQ2 1017 aa7.65□□□□□ -1.18
UPF3B-203ENST00000478840 CEP135Q66GS9 1140 aa7.65□□□□□ -1.18
UPF3B-203ENST00000478840 REXO1Q8N1G1 1221 aaKnown RBP7.65□□□□□ -1.18
UPF3B-203ENST00000478840 PLD4Q96BZ4 506 aa7.65□□□□□ -1.18
UPF3B-203ENST00000478840 MRFAP1L1Q96HT8 127 aa7.65□□□□□ -1.18
UPF3B-203ENST00000478840 FRRS1LQ9P0K9 344 aa7.65□□□□□ -1.18
UPF3B-203ENST00000478840 SLC6A14Q9UN76 642 aa7.65□□□□□ -1.18
UPF3B-203ENST00000478840 PCDHB5Q9Y5E4 795 aa7.65□□□□□ -1.18
UPF3B-203ENST00000478840 MRVI1Q9Y6F6 885 aa7.65□□□□□ -1.18
UPF3B-203ENST00000478840 PPFIA3O75145 1194 aa7.64□□□□□ -1.19
UPF3B-203ENST00000478840 SEZ6Q53EL9 994 aa7.64□□□□□ -1.19
UPF3B-203ENST00000478840 PERM1Q5SV97 790 aa7.64□□□□□ -1.19
UPF3B-203ENST00000478840 ADAMTSL4Q6UY14 1074 aa7.64□□□□□ -1.19
UPF3B-203ENST00000478840 FAM35AQ86V20 835 aa7.64□□□□□ -1.19
UPF3B-203ENST00000478840 JAZF1Q86VZ6 243 aa7.64□□□□□ -1.19
UPF3B-203ENST00000478840 CACTIN-AS1Q8N1I8 211 aa7.64□□□□□ -1.19
UPF3B-203ENST00000478840 CPLX3Q8WVH0 158 aa7.64□□□□□ -1.19
UPF3B-203ENST00000478840 EMILIN2Q9BXX0 1053 aa7.64□□□□□ -1.19
UPF3B-203ENST00000478840 ANKRD62A6NC57 917 aa7.63□□□□□ -1.19
UPF3B-203ENST00000478840 GPR25O00155 361 aa7.63□□□□□ -1.19
UPF3B-203ENST00000478840 ARAFP10398 606 aa7.63□□□□□ -1.19
UPF3B-203ENST00000478840 ESRRAP11474 423 aaPredicted RBP7.63□□□□□ -1.19
UPF3B-203ENST00000478840 BMP4P12644 408 aa7.63□□□□□ -1.19
UPF3B-203ENST00000478840 ARNTP27540 789 aa7.63□□□□□ -1.19
UPF3B-203ENST00000478840 GIPRP48546 466 aa7.63□□□□□ -1.19
UPF3B-203ENST00000478840 ZNF252P-AS1Q0IIN9 211 aa7.63□□□□□ -1.19
UPF3B-203ENST00000478840 CWF19L2Q2TBE0 894 aaKnown RBP7.63□□□□□ -1.19
UPF3B-203ENST00000478840 TNNI3KQ59H18 835 aa7.63□□□□□ -1.19
UPF3B-203ENST00000478840 SV2AQ7L0J3 742 aa7.63□□□□□ -1.19
UPF3B-203ENST00000478840 SULF2Q8IWU5 870 aa7.63□□□□□ -1.19
UPF3B-203ENST00000478840 FBXO27Q8NI29 283 aa7.63□□□□□ -1.19
UPF3B-203ENST00000478840 GAL3ST3Q96A11 431 aa7.63□□□□□ -1.19
UPF3B-203ENST00000478840 IGFLR1Q9H665 355 aa7.63□□□□□ -1.19
UPF3B-203ENST00000478840 CACNA2D2Q9NY47 1150 aa7.63□□□□□ -1.19
UPF3B-203ENST00000478840 KLF15Q9UIH9 416 aa7.63□□□□□ -1.19
UPF3B-203ENST00000478840 NAGPAQ9UK23 515 aa7.63□□□□□ -1.19
UPF3B-203ENST00000478840 TERTO14746 1132 aaKnown RBP7.62□□□□□ -1.19
UPF3B-203ENST00000478840 CPB1P15086 417 aa7.62□□□□□ -1.19
UPF3B-203ENST00000478840 LMNB1P20700 586 aa7.62□□□□□ -1.19
UPF3B-203ENST00000478840 ADH7P40394 386 aa7.62□□□□□ -1.19
UPF3B-203ENST00000478840 ZNF165P49910 485 aa7.62□□□□□ -1.19
UPF3B-203ENST00000478840 ZNF157P51786 506 aaPredicted RBP7.62□□□□□ -1.19
UPF3B-203ENST00000478840 PCBP4P57723 403 aaKnown RBP7.62□□□□□ -1.19
UPF3B-203ENST00000478840 LCE2AQ5TA79 106 aaPredicted RBP7.62□□□□□ -1.19
UPF3B-203ENST00000478840 LLGL2Q6P1M3 1020 aa7.62□□□□□ -1.19
UPF3B-203ENST00000478840 TREML4Q6UXN2 200 aa7.62□□□□□ -1.19
UPF3B-203ENST00000478840 ZNF662Q6ZS27 426 aa7.62□□□□□ -1.19
UPF3B-203ENST00000478840 REC114Q7Z4M0 266 aa7.62□□□□□ -1.19
UPF3B-203ENST00000478840 VWA5B2Q8N398 1253 aa7.62□□□□□ -1.19
UPF3B-203ENST00000478840 RBBP8NLQ8NC74 664 aaPredicted RBP7.62□□□□□ -1.19
UPF3B-203ENST00000478840 OR6P1Q8NGX9 317 aa7.62□□□□□ -1.19
UPF3B-203ENST00000478840 STK35Q8TDR2 534 aa7.62□□□□□ -1.19
UPF3B-203ENST00000478840 ANAPC16Q96DE5 110 aa7.62□□□□□ -1.19
UPF3B-203ENST00000478840 LPIN3Q9BQK8 851 aa7.62□□□□□ -1.19
UPF3B-203ENST00000478840 TRIM55Q9BYV6 548 aa7.62□□□□□ -1.19
UPF3B-203ENST00000478840 SOX17Q9H6I2 414 aaPredicted RBP7.62□□□□□ -1.19
UPF3B-203ENST00000478840 ZNRF3Q9ULT6 936 aa7.62□□□□□ -1.19
UPF3B-203ENST00000478840 PPT2Q9UMR5 302 aa7.62□□□□□ -1.19
UPF3B-203ENST00000478840 MSRB2Q9Y3D2 182 aa7.62□□□□□ -1.19
UPF3B-203ENST00000478840 SBNO2Q9Y2G9 1366 aa7.61□□□□□ -1.19
UPF3B-203ENST00000478840 EIF4EBP3O60516 100 aaPredicted RBP7.61□□□□□ -1.19
UPF3B-203ENST00000478840 IMPDH2P12268 514 aa7.61□□□□□ -1.19
UPF3B-203ENST00000478840 ADH6P28332 368 aa7.61□□□□□ -1.19
UPF3B-203ENST00000478840 EIF6P56537 245 aaKnown RBP7.61□□□□□ -1.19
UPF3B-203ENST00000478840 RASA3Q14644 834 aa7.61□□□□□ -1.19
UPF3B-203ENST00000478840 DIEXFQ68CQ4 756 aaKnown RBP7.61□□□□□ -1.19
UPF3B-203ENST00000478840 ELMSAN1Q6PJG2 1045 aa7.61□□□□□ -1.19
UPF3B-203ENST00000478840 PDZD3Q86UT5 571 aa7.61□□□□□ -1.19
UPF3B-203ENST00000478840 MICALL1Q8N3F8 863 aa7.61□□□□□ -1.19
UPF3B-203ENST00000478840 HNRNPLLQ8WVV9 542 aaKnown RBP7.61□□□□□ -1.19
UPF3B-203ENST00000478840 SMG9Q9H0W8 520 aaKnown RBP7.61□□□□□ -1.19
UPF3B-203ENST00000478840 EHMT1Q9H9B1 1298 aa7.61□□□□□ -1.19
UPF3B-203ENST00000478840 TRIM33Q9UPN9 1127 aa7.61□□□□□ -1.19
UPF3B-203ENST00000478840 CDC14CA4D256 554 aa7.6□□□□□ -1.19
UPF3B-203ENST00000478840 ENPP3O14638 875 aa7.6□□□□□ -1.19
UPF3B-203ENST00000478840 U2SURPO15042 1029 aaKnown RBP7.6□□□□□ -1.19
UPF3B-203ENST00000478840 SMAD7O15105 426 aaKnown RBP7.6□□□□□ -1.19
UPF3B-203ENST00000478840 TLR3O15455 904 aaKnown RBP7.6□□□□□ -1.19
UPF3B-203ENST00000478840 WFS1O76024 890 aa7.6□□□□□ -1.19
UPF3B-203ENST00000478840 TRIM37O94972 964 aa7.6□□□□□ -1.19
UPF3B-203ENST00000478840 ATE1O95260 518 aa7.6□□□□□ -1.19
UPF3B-203ENST00000478840 HSD3B2P26439 372 aa7.6□□□□□ -1.19
UPF3B-203ENST00000478840 TBC1D8BQ0IIM8 1120 aa7.6□□□□□ -1.19
UPF3B-203ENST00000478840 AP3B2Q13367 1082 aa7.6□□□□□ -1.19
UPF3B-203ENST00000478840 SEPT6Q14141 434 aa7.6□□□□□ -1.19
UPF3B-203ENST00000478840 FAM169BQ8N8A8 192 aa7.6□□□□□ -1.19
UPF3B-203ENST00000478840 DDX54Q8TDD1 881 aaKnown RBP7.6□□□□□ -1.19
UPF3B-203ENST00000478840 CCDC113Q9H0I3 377 aa7.6□□□□□ -1.19
UPF3B-203ENST00000478840 MX2P20592 715 aa7.59□□□□□ -1.19
UPF3B-203ENST00000478840 RPL6Q02878 288 aaKnown RBP7.59□□□□□ -1.19
UPF3B-203ENST00000478840 TCEAL1Q15170 157 aa7.59□□□□□ -1.19
UPF3B-203ENST00000478840 CCDC81Q6ZN84 652 aa7.59□□□□□ -1.19
UPF3B-203ENST00000478840 GRIN3AQ8TCU5 1115 aa7.59□□□□□ -1.19
UPF3B-203ENST00000478840 JARID2Q92833 1246 aaPredicted RBP7.59□□□□□ -1.19
UPF3B-203ENST00000478840 FERD3LQ96RJ6 166 aa7.59□□□□□ -1.19
UPF3B-203ENST00000478840 SRPK1Q96SB4 655 aaKnown RBP7.59□□□□□ -1.19
UPF3B-203ENST00000478840 BRMS1Q9HCU9 246 aa7.59□□□□□ -1.19
UPF3B-203ENST00000478840 SNTG2Q9NY99 539 aa7.59□□□□□ -1.19
UPF3B-203ENST00000478840 NXF1Q9UBU9 619 aaKnown RBP7.59□□□□□ -1.19
UPF3B-203ENST00000478840 R3HCC1Q9Y3T6 440 aaKnown RBP7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms