RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 TTLL12Q14166 644 aaPredicted RBP22.25■■□□□ 1.15
UPF3A-203ENST00000474056 SPDYE2Q495Y8 402 aa22.25■■□□□ 1.15
UPF3A-203ENST00000474056 RASAL3Q86YV0 1011 aa22.25■■□□□ 1.15
UPF3A-203ENST00000474056 CCDC102AQ96A19 550 aa22.25■■□□□ 1.15
UPF3A-203ENST00000474056 BEGAINQ9BUH8 593 aa22.25■■□□□ 1.15
UPF3A-203ENST00000474056 TDRD3Q9H7E2 651 aaKnown RBP22.25■■□□□ 1.15
UPF3A-203ENST00000474056 MYH2Q9UKX2 1941 aa22.24■■□□□ 1.15
UPF3A-203ENST00000474056 PRKG1Q13976 671 aa22.24■■□□□ 1.15
UPF3A-203ENST00000474056 IFFO2Q5TF58 517 aa22.24■■□□□ 1.15
UPF3A-203ENST00000474056 ZNF70Q9UC06 446 aaPredicted RBP22.24■■□□□ 1.15
UPF3A-203ENST00000474056 OTOFQ9HC10 1997 aa22.23■■□□□ 1.15
UPF3A-203ENST00000474056 CASP8AP2Q9UKL3 1982 aa22.23■■□□□ 1.15
UPF3A-203ENST00000474056 ZBTB7BO15156 539 aaPredicted RBP22.23■■□□□ 1.15
UPF3A-203ENST00000474056 TIMM10P62072 90 aa22.23■■□□□ 1.15
UPF3A-203ENST00000474056 PANK1Q8TE04 598 aa22.23■■□□□ 1.15
UPF3A-203ENST00000474056 PRDM10Q9NQV6 1147 aa22.23■■□□□ 1.15
UPF3A-203ENST00000474056 FZD1Q9UP38 647 aa22.23■■□□□ 1.15
UPF3A-203ENST00000474056 PPP2R3BQ9Y5P8 575 aa22.23■■□□□ 1.15
UPF3A-203ENST00000474056 A0A1B0GUL7 405 aa22.22■■□□□ 1.15
UPF3A-203ENST00000474056 HDLBPQ00341 1268 aaKnown RBP22.22■■□□□ 1.15
UPF3A-203ENST00000474056 POLA2Q14181 598 aa22.22■■□□□ 1.15
UPF3A-203ENST00000474056 CCDC102BQ68D86 513 aa22.22■■□□□ 1.15
UPF3A-203ENST00000474056 WDR66Q8TBY9 1149 aa22.22■■□□□ 1.15
UPF3A-203ENST00000474056 GNL3LQ9NVN8 582 aaKnown RBP22.22■■□□□ 1.15
UPF3A-203ENST00000474056 TSKSQ9UJT2 592 aa22.22■■□□□ 1.15
UPF3A-203ENST00000474056 SUGT1Q9Y2Z0 365 aa22.22■■□□□ 1.15
UPF3A-203ENST00000474056 ATP8B2P98198 1209 aa22.21■■□□□ 1.15
UPF3A-203ENST00000474056 KIF23Q02241 960 aaPredicted RBP22.21■■□□□ 1.15
UPF3A-203ENST00000474056 G3BP1Q13283 466 aaKnown RBP eCLIP22.21■■□□□ 1.15
UPF3A-203ENST00000474056 RASA3Q14644 834 aa22.21■■□□□ 1.15
UPF3A-203ENST00000474056 TEKT1Q969V4 418 aa22.21■■□□□ 1.15
UPF3A-203ENST00000474056 AKAP2Q9Y2D5 859 aa22.21■■□□□ 1.15
UPF3A-203ENST00000474056 MAST3O60307 1309 aa22.21■■□□□ 1.15
UPF3A-203ENST00000474056 PRDX5P30044 214 aa22.2■■□□□ 1.14
UPF3A-203ENST00000474056 TNFAIP1Q13829 316 aa22.2■■□□□ 1.14
UPF3A-203ENST00000474056 NBPF12Q5TAG4 269 aaPredicted RBP22.2■■□□□ 1.14
UPF3A-203ENST00000474056 ARMC9Q7Z3E5 817 aa22.2■■□□□ 1.14
UPF3A-203ENST00000474056 TNS4Q8IZW8 715 aa22.2■■□□□ 1.14
UPF3A-203ENST00000474056 SSH3Q8TE77 659 aa22.2■■□□□ 1.14
UPF3A-203ENST00000474056 XAGE2Q96GT9 111 aa22.2■■□□□ 1.14
UPF3A-203ENST00000474056 DENND2AQ9ULE3 1009 aa22.2■■□□□ 1.14
UPF3A-203ENST00000474056 ANGEL1Q9UNK9 670 aaKnown RBP22.2■■□□□ 1.14
UPF3A-203ENST00000474056 TCP10L2B9ZVM9 353 aa22.19■■□□□ 1.14
UPF3A-203ENST00000474056 ZDHHC15Q96MV8 337 aa22.19■■□□□ 1.14
UPF3A-203ENST00000474056 MRIQ9BWK5 157 aa22.19■■□□□ 1.14
UPF3A-203ENST00000474056 AK9Q5TCS8 1911 aa22.19■■□□□ 1.14
UPF3A-203ENST00000474056 SALL1Q9NSC2 1324 aa22.18■■□□□ 1.14
UPF3A-203ENST00000474056 SEMA3EO15041 775 aa22.18■■□□□ 1.14
UPF3A-203ENST00000474056 HHIPL2Q6UWX4 724 aa22.18■■□□□ 1.14
UPF3A-203ENST00000474056 NEUROD6Q96NK8 337 aa22.18■■□□□ 1.14
UPF3A-203ENST00000474056 LAMB1P07942 1786 aa22.17■■□□□ 1.14
UPF3A-203ENST00000474056 ZBTB22O15209 634 aa22.17■■□□□ 1.14
UPF3A-203ENST00000474056 CACNB3P54284 484 aa22.17■■□□□ 1.14
UPF3A-203ENST00000474056 RASGRF1Q13972 1273 aa22.17■■□□□ 1.14
UPF3A-203ENST00000474056 MAP3K11Q16584 847 aa22.17■■□□□ 1.14
UPF3A-203ENST00000474056 APOBEC3HQ6NTF7 200 aaKnown RBP22.17■■□□□ 1.14
UPF3A-203ENST00000474056 CDAN1Q8IWY9 1227 aa22.17■■□□□ 1.14
UPF3A-203ENST00000474056 RCAN3Q9UKA8 241 aa22.17■■□□□ 1.14
UPF3A-203ENST00000474056 CA12O43570 354 aa22.16■■□□□ 1.14
UPF3A-203ENST00000474056 DIXDC1Q155Q3 683 aa22.16■■□□□ 1.14
UPF3A-203ENST00000474056 SUPT20HL1Q3ZLR7 823 aa22.16■■□□□ 1.14
UPF3A-203ENST00000474056 LDLRAD1Q5T700 205 aa22.16■■□□□ 1.14
UPF3A-203ENST00000474056 TEPSINQ96N21 525 aa22.16■■□□□ 1.14
UPF3A-203ENST00000474056 CSRNP1Q96S65 589 aa22.16■■□□□ 1.14
UPF3A-203ENST00000474056 TMEM39BQ9GZU3 492 aa22.16■■□□□ 1.14
UPF3A-203ENST00000474056 PPP1R12BO60237 982 aaPredicted RBP22.15■■□□□ 1.14
UPF3A-203ENST00000474056 LDHBP07195 334 aaKnown RBP22.15■■□□□ 1.14
UPF3A-203ENST00000474056 MVPQ14764 893 aaKnown RBP22.15■■□□□ 1.14
UPF3A-203ENST00000474056 CEP85Q6P2H3 762 aa22.15■■□□□ 1.14
UPF3A-203ENST00000474056 DAGLAQ9Y4D2 1042 aa22.15■■□□□ 1.14
UPF3A-203ENST00000474056 MYO5AQ9Y4I1 1855 aaKnown RBP22.15■■□□□ 1.14
UPF3A-203ENST00000474056 SURF6O75683 361 aaKnown RBP22.14■■□□□ 1.13
UPF3A-203ENST00000474056 MS4A1P11836 297 aa22.14■■□□□ 1.13
UPF3A-203ENST00000474056 TNNI2P48788 182 aa22.14■■□□□ 1.13
UPF3A-203ENST00000474056 MKRN3Q13064 507 aaKnown RBP22.14■■□□□ 1.13
UPF3A-203ENST00000474056 OS9Q13438 667 aaPredicted RBP22.14■■□□□ 1.13
UPF3A-203ENST00000474056 PDS5AQ29RF7 1337 aaKnown RBP22.13■■□□□ 1.13
UPF3A-203ENST00000474056 USP2O75604 605 aaPredicted RBP22.13■■□□□ 1.13
UPF3A-203ENST00000474056 TMOD2Q9NZR1 351 aa22.13■■□□□ 1.13
UPF3A-203ENST00000474056 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.13■■□□□ 1.13
UPF3A-203ENST00000474056 COG6Q9Y2V7 657 aa22.13■■□□□ 1.13
UPF3A-203ENST00000474056 TNNI3KQ59H18 835 aa22.12■■□□□ 1.13
UPF3A-203ENST00000474056 ZGPATQ8N5A5 531 aaKnown RBP22.12■■□□□ 1.13
UPF3A-203ENST00000474056 CLMNQ96JQ2 1002 aa22.12■■□□□ 1.13
UPF3A-203ENST00000474056 NOP58Q9Y2X3 529 aaKnown RBP22.12■■□□□ 1.13
UPF3A-203ENST00000474056 FPGT-TNNI3KV9GXZ4 949 aa22.12■■□□□ 1.13
UPF3A-203ENST00000474056 ARID4AP29374 1257 aaPredicted RBP22.11■■□□□ 1.13
UPF3A-203ENST00000474056 IREB2P48200 963 aaKnown RBP22.11■■□□□ 1.13
UPF3A-203ENST00000474056 GORABQ5T7V8 394 aa22.11■■□□□ 1.13
UPF3A-203ENST00000474056 PI16Q6UXB8 463 aa22.11■■□□□ 1.13
UPF3A-203ENST00000474056 GPR108Q9NPR9 543 aa22.11■■□□□ 1.13
UPF3A-203ENST00000474056 RNF186Q9NXI6 227 aa22.11■■□□□ 1.13
UPF3A-203ENST00000474056 SAGE1Q9NXZ1 904 aa22.11■■□□□ 1.13
UPF3A-203ENST00000474056 HMG20BQ9P0W2 317 aa22.11■■□□□ 1.13
UPF3A-203ENST00000474056 ABCF2Q9UG63 623 aa22.11■■□□□ 1.13
UPF3A-203ENST00000474056 TRPA1O75762 1119 aa22.1■■□□□ 1.13
UPF3A-203ENST00000474056 CDC42EP5Q6NZY7 148 aa22.1■■□□□ 1.13
UPF3A-203ENST00000474056 REM2Q8IYK8 340 aaPredicted RBP22.1■■□□□ 1.13
UPF3A-203ENST00000474056 DDX19BQ9UMR2 479 aa22.1■■□□□ 1.13
UPF3A-203ENST00000474056 DOCK2Q92608 1830 aa22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 117.9 ms