RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 SOGA3Q5TF21 947 aa15.31■□□□□ 0.04
VPS13D-205ENST00000473099 TTLL6Q8N841 843 aa15.31■□□□□ 0.04
VPS13D-205ENST00000473099 PUS7LQ9H0K6 701 aaKnown RBP15.31■□□□□ 0.04
VPS13D-205ENST00000473099 ATF5Q9Y2D1 282 aaPredicted RBP15.31■□□□□ 0.04
VPS13D-205ENST00000473099 CHGBP05060 677 aa15.3■□□□□ 0.04
VPS13D-205ENST00000473099 CYP7A1P22680 504 aa15.3■□□□□ 0.04
VPS13D-205ENST00000473099 NEK4P51957 841 aa15.3■□□□□ 0.04
VPS13D-205ENST00000473099 GSTO1P78417 241 aa15.3■□□□□ 0.04
VPS13D-205ENST00000473099 CHAF1AQ13111 956 aaPredicted RBP15.3■□□□□ 0.04
VPS13D-205ENST00000473099 ECM29Q5VYK3 1845 aa15.3■□□□□ 0.04
VPS13D-205ENST00000473099 NAA16Q6N069 864 aaPredicted RBP15.3■□□□□ 0.04
VPS13D-205ENST00000473099 FAM205AQ6ZU69 1335 aa15.3■□□□□ 0.04
VPS13D-205ENST00000473099 CERS3Q8IU89 383 aa15.3■□□□□ 0.04
VPS13D-205ENST00000473099 RTFDC1Q9BY42 306 aaPredicted RBP15.3■□□□□ 0.04
VPS13D-205ENST00000473099 NAV1Q8NEY1 1877 aa15.29■□□□□ 0.04
VPS13D-205ENST00000473099 LDHBP07195 334 aaKnown RBP15.29■□□□□ 0.04
VPS13D-205ENST00000473099 PTGER2P43116 358 aa15.29■□□□□ 0.04
VPS13D-205ENST00000473099 ALX1Q15699 326 aa15.29■□□□□ 0.04
VPS13D-205ENST00000473099 IMMTQ16891 758 aaKnown RBP15.29■□□□□ 0.04
VPS13D-205ENST00000473099 RASEFQ8IZ41 740 aa15.29■□□□□ 0.04
VPS13D-205ENST00000473099 C7orf43Q8WVR3 580 aa15.29■□□□□ 0.04
VPS13D-205ENST00000473099 SUGT1Q9Y2Z0 365 aa15.29■□□□□ 0.04
VPS13D-205ENST00000473099 CYP46A1Q9Y6A2 500 aa15.29■□□□□ 0.04
VPS13D-205ENST00000473099 SCN9AQ15858 1988 aa15.29■□□□□ 0.04
VPS13D-205ENST00000473099 MYH1P12882 1939 aa15.29■□□□□ 0.04
VPS13D-205ENST00000473099 TIAM2Q8IVF5 1701 aa15.29■□□□□ 0.04
VPS13D-205ENST00000473099 SNED1Q8TER0 1413 aa15.28■□□□□ 0.04
VPS13D-205ENST00000473099 G3V3G9 751 aa15.28■□□□□ 0.04
VPS13D-205ENST00000473099 LDHCP07864 332 aa15.28■□□□□ 0.04
VPS13D-205ENST00000473099 HMGB1P09429 215 aaKnown RBP15.28■□□□□ 0.04
VPS13D-205ENST00000473099 SLFNL1Q499Z3 407 aa15.28■□□□□ 0.04
VPS13D-205ENST00000473099 CCDC93Q567U6 631 aa15.28■□□□□ 0.04
VPS13D-205ENST00000473099 DCAF8Q5TAQ9 597 aa15.28■□□□□ 0.04
VPS13D-205ENST00000473099 DZIP1Q86YF9 867 aaKnown RBP15.28■□□□□ 0.04
VPS13D-205ENST00000473099 SLF2Q8IX21 1173 aa15.28■□□□□ 0.04
VPS13D-205ENST00000473099 RTKN2Q8IZC4 609 aa15.28■□□□□ 0.04
VPS13D-205ENST00000473099 NSUN4Q96CB9 384 aaKnown RBP15.28■□□□□ 0.04
VPS13D-205ENST00000473099 STRBPQ96SI9 672 aaKnown RBP15.28■□□□□ 0.04
VPS13D-205ENST00000473099 NACAP1Q9BZK3 213 aa15.28■□□□□ 0.04
VPS13D-205ENST00000473099 ZSWIM6Q9HCJ5 1215 aa15.28■□□□□ 0.04
VPS13D-205ENST00000473099 MAGEB6P1A0A0J9YX57 407 aa15.27■□□□□ 0.04
VPS13D-205ENST00000473099 PATL2C9JE40 543 aaKnown RBP15.27■□□□□ 0.04
VPS13D-205ENST00000473099 MBD4O95243 580 aa15.27■□□□□ 0.04
VPS13D-205ENST00000473099 CASTP20810 708 aaKnown RBP15.27■□□□□ 0.04
VPS13D-205ENST00000473099 YY1P25490 414 aa15.27■□□□□ 0.04
VPS13D-205ENST00000473099 MECOMQ03112 1051 aa15.27■□□□□ 0.04
VPS13D-205ENST00000473099 VPS53Q5VIR6 699 aa15.27■□□□□ 0.04
VPS13D-205ENST00000473099 PODNQ7Z5L7 613 aa15.27■□□□□ 0.04
VPS13D-205ENST00000473099 JAKMIP1Q96N16 626 aaKnown RBP15.27■□□□□ 0.04
VPS13D-205ENST00000473099 GPR101Q96P66 508 aaPredicted RBP15.27■□□□□ 0.04
VPS13D-205ENST00000473099 VPS33BQ9H267 617 aa15.27■□□□□ 0.04
VPS13D-205ENST00000473099 CD2APQ9Y5K6 639 aa15.27■□□□□ 0.04
VPS13D-205ENST00000473099 MYH8P13535 1937 aa15.26■□□□□ 0.03
VPS13D-205ENST00000473099 FGAP02671 866 aa15.26■□□□□ 0.03
VPS13D-205ENST00000473099 CYP21A2P08686 494 aa15.26■□□□□ 0.03
VPS13D-205ENST00000473099 DPEP1P16444 411 aa15.26■□□□□ 0.03
VPS13D-205ENST00000473099 ANKRD1Q15327 319 aa15.26■□□□□ 0.03
VPS13D-205ENST00000473099 BLOC1S2Q6QNY1 142 aa15.26■□□□□ 0.03
VPS13D-205ENST00000473099 RUFY3Q7L099 469 aa15.26■□□□□ 0.03
VPS13D-205ENST00000473099 SLC51AQ86UW1 340 aa15.26■□□□□ 0.03
VPS13D-205ENST00000473099 FHDC1Q9C0D6 1143 aaPredicted RBP15.26■□□□□ 0.03
VPS13D-205ENST00000473099 ALDH8A1Q9H2A2 487 aaPredicted RBP15.26■□□□□ 0.03
VPS13D-205ENST00000473099 PIM2Q9P1W9 311 aa15.26■□□□□ 0.03
VPS13D-205ENST00000473099 ZNF213O14771 459 aa15.25■□□□□ 0.03
VPS13D-205ENST00000473099 APPP05067 770 aa15.25■□□□□ 0.03
VPS13D-205ENST00000473099 HSP90AA1P07900 732 aaKnown RBP15.25■□□□□ 0.03
VPS13D-205ENST00000473099 PRDX5P30044 214 aa15.25■□□□□ 0.03
VPS13D-205ENST00000473099 FKBP1AP62942 108 aaKnown RBP15.25■□□□□ 0.03
VPS13D-205ENST00000473099 GIMAP6Q6P9H5 292 aa15.25■□□□□ 0.03
VPS13D-205ENST00000473099 TTC14Q96N46 770 aa15.25■□□□□ 0.03
VPS13D-205ENST00000473099 NEK1Q96PY6 1258 aa15.25■□□□□ 0.03
VPS13D-205ENST00000473099 PSMD1Q99460 953 aa15.25■□□□□ 0.03
VPS13D-205ENST00000473099 SGIP1Q9BQI5 828 aa15.25■□□□□ 0.03
VPS13D-205ENST00000473099 NOL10Q9BSC4 688 aaKnown RBP15.25■□□□□ 0.03
VPS13D-205ENST00000473099 RIMBP2O15034 1052 aa15.24■□□□□ 0.03
VPS13D-205ENST00000473099 FOXP2O15409 715 aa15.24■□□□□ 0.03
VPS13D-205ENST00000473099 CD2BP2O95400 341 aaKnown RBP15.24■□□□□ 0.03
VPS13D-205ENST00000473099 BAG3O95817 575 aa15.24■□□□□ 0.03
VPS13D-205ENST00000473099 KCNA3P22001 575 aa15.24■□□□□ 0.03
VPS13D-205ENST00000473099 SLC4A3P48751 1232 aa15.24■□□□□ 0.03
VPS13D-205ENST00000473099 ADCK5Q3MIX3 580 aa15.24■□□□□ 0.03
VPS13D-205ENST00000473099 MFSD14BQ5SR56 506 aa15.24■□□□□ 0.03
VPS13D-205ENST00000473099 LCORLQ8N3X6 602 aa15.24■□□□□ 0.03
VPS13D-205ENST00000473099 UPF3BQ9BZI7 483 aaKnown RBP15.24■□□□□ 0.03
VPS13D-205ENST00000473099 CRNKL1Q9BZJ0 848 aaKnown RBP15.24■□□□□ 0.03
VPS13D-205ENST00000473099 NAPBQ9H115 298 aa15.24■□□□□ 0.03
VPS13D-205ENST00000473099 ARMT1Q9H993 441 aa15.24■□□□□ 0.03
VPS13D-205ENST00000473099 PDRG1Q9NUG6 133 aa15.24■□□□□ 0.03
VPS13D-205ENST00000473099 SLC4A4Q9Y6R1 1079 aa15.24■□□□□ 0.03
VPS13D-205ENST00000473099 DICER1Q9UPY3 1922 aaKnown RBP15.23■□□□□ 0.03
VPS13D-205ENST00000473099 A0A0G2JLW4 131 aa15.23■□□□□ 0.03
VPS13D-205ENST00000473099 PLCG2P16885 1265 aa15.23■□□□□ 0.03
VPS13D-205ENST00000473099 RPS6KB1P23443 525 aa15.23■□□□□ 0.03
VPS13D-205ENST00000473099 KIAA2012Q0VF49 1180 aa15.23■□□□□ 0.03
VPS13D-205ENST00000473099 OLFM4Q6UX06 510 aa15.23■□□□□ 0.03
VPS13D-205ENST00000473099 IFNL3Q8IZI9 196 aa15.23■□□□□ 0.03
VPS13D-205ENST00000473099 ZSCAN31Q96LW9 406 aaPredicted RBP15.23■□□□□ 0.03
VPS13D-205ENST00000473099 RIOK1Q9BRS2 568 aaKnown RBP15.23■□□□□ 0.03
VPS13D-205ENST00000473099 MROH7-TTC4A0A0A0MT08 1334 aa15.22■□□□□ 0.03
VPS13D-205ENST00000473099 GSG1L2A8MUP6 293 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms