RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 BCAR3O75815 825 aa19.61■□□□□ 0.73
CCDC88B-205ENST00000472524 FGFR2P21802 821 aa19.61■□□□□ 0.73
CCDC88B-205ENST00000472524 ARHGAP45Q92619 1136 aa19.61■□□□□ 0.73
CCDC88B-205ENST00000472524 FRAT1Q92837 279 aaPredicted RBP19.61■□□□□ 0.73
CCDC88B-205ENST00000472524 CLMNQ96JQ2 1002 aa19.61■□□□□ 0.73
CCDC88B-205ENST00000472524 HDAC5Q9UQL6 1122 aa19.61■□□□□ 0.73
CCDC88B-205ENST00000472524 SLC5A1P13866 664 aa19.6■□□□□ 0.73
CCDC88B-205ENST00000472524 GRIK5Q16478 980 aa19.6■□□□□ 0.73
CCDC88B-205ENST00000472524 PKN2Q16513 984 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-205ENST00000472524 INTS3Q68E01 1043 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-205ENST00000472524 ATG9AQ7Z3C6 839 aa19.6■□□□□ 0.73
CCDC88B-205ENST00000472524 PA2G4Q9UQ80 394 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-205ENST00000472524 TNNQ9UQP3 1299 aa19.6■□□□□ 0.73
CCDC88B-205ENST00000472524 IPO8O15397 1037 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-205ENST00000472524 TRIM27P14373 513 aa19.59■□□□□ 0.73
CCDC88B-205ENST00000472524 CRKP46108 304 aa19.59■□□□□ 0.73
CCDC88B-205ENST00000472524 NOM1Q5C9Z4 860 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-205ENST00000472524 SLC10A4Q96EP9 437 aa19.59■□□□□ 0.73
CCDC88B-205ENST00000472524 SERPINA10Q9UK55 444 aa19.59■□□□□ 0.73
CCDC88B-205ENST00000472524 PPP2R3BQ9Y5P8 575 aa19.59■□□□□ 0.73
CCDC88B-205ENST00000472524 OTOFQ9HC10 1997 aa19.59■□□□□ 0.73
CCDC88B-205ENST00000472524 MAP3K11Q16584 847 aa19.58■□□□□ 0.72
CCDC88B-205ENST00000472524 NBPF12Q5TAG4 269 aaPredicted RBP19.58■□□□□ 0.72
CCDC88B-205ENST00000472524 TBC1D22AQ8WUA7 517 aa19.58■□□□□ 0.72
CCDC88B-205ENST00000472524 LPIN2Q92539 896 aa19.58■□□□□ 0.72
CCDC88B-205ENST00000472524 CFHR5Q9BXR6 569 aa19.58■□□□□ 0.72
CCDC88B-205ENST00000472524 TDRD3Q9H7E2 651 aaKnown RBP19.58■□□□□ 0.72
CCDC88B-205ENST00000472524 PPP1R12BO60237 982 aaPredicted RBP19.57■□□□□ 0.72
CCDC88B-205ENST00000472524 CIAO1O76071 339 aa19.57■□□□□ 0.72
CCDC88B-205ENST00000472524 GNAI3P08754 354 aa19.57■□□□□ 0.72
CCDC88B-205ENST00000472524 ATP2B3Q16720 1220 aa19.57■□□□□ 0.72
CCDC88B-205ENST00000472524 ATF7IPQ6VMQ6 1270 aa19.57■□□□□ 0.72
CCDC88B-205ENST00000472524 DZIP1LQ8IYY4 767 aaKnown RBP19.57■□□□□ 0.72
CCDC88B-205ENST00000472524 CLUAP1Q96AJ1 413 aa19.57■□□□□ 0.72
CCDC88B-205ENST00000472524 WNK4Q96J92 1243 aa19.57■□□□□ 0.72
CCDC88B-205ENST00000472524 CEP126Q9P2H0 1117 aa19.57■□□□□ 0.72
CCDC88B-205ENST00000472524 ZNF70Q9UC06 446 aaPredicted RBP19.57■□□□□ 0.72
CCDC88B-205ENST00000472524 FBXO3Q9UK99 471 aa19.57■□□□□ 0.72
CCDC88B-205ENST00000472524 AK9Q5TCS8 1911 aa19.57■□□□□ 0.72
CCDC88B-205ENST00000472524 MANSC4A6NHS7 340 aaPredicted RBP19.56■□□□□ 0.72
CCDC88B-205ENST00000472524 FKTNO75072 461 aa19.56■□□□□ 0.72
CCDC88B-205ENST00000472524 RASA3Q14644 834 aa19.56■□□□□ 0.72
CCDC88B-205ENST00000472524 SUPT20HL1Q3ZLR7 823 aa19.56■□□□□ 0.72
CCDC88B-205ENST00000472524 SPDYE2Q495Y8 402 aa19.56■□□□□ 0.72
CCDC88B-205ENST00000472524 IFNL1Q8IU54 200 aa19.56■□□□□ 0.72
CCDC88B-205ENST00000472524 IL15P40933 162 aaPredicted RBP19.55■□□□□ 0.72
CCDC88B-205ENST00000472524 TCP10L2B9ZVM9 353 aa19.54■□□□□ 0.72
CCDC88B-205ENST00000472524 IGF2BP3O00425 579 aaKnown RBP eCLIP19.54■□□□□ 0.72
CCDC88B-205ENST00000472524 SRGAP3O43295 1099 aa19.54■□□□□ 0.72
CCDC88B-205ENST00000472524 USP2O75604 605 aaPredicted RBP19.54■□□□□ 0.72
CCDC88B-205ENST00000472524 ALDH1A1P00352 501 aa19.54■□□□□ 0.72
CCDC88B-205ENST00000472524 ZBTB48P10074 688 aaPredicted RBP19.54■□□□□ 0.72
CCDC88B-205ENST00000472524 GJA5P36382 358 aa19.54■□□□□ 0.72
CCDC88B-205ENST00000472524 TNFAIP1Q13829 316 aa19.54■□□□□ 0.72
CCDC88B-205ENST00000472524 FBXO46Q6PJ61 603 aaPredicted RBP19.54■□□□□ 0.72
CCDC88B-205ENST00000472524 TEKT1Q969V4 418 aa19.54■□□□□ 0.72
CCDC88B-205ENST00000472524 COPRSQ9NQ92 184 aa19.54■□□□□ 0.72
CCDC88B-205ENST00000472524 MYH2Q9UKX2 1941 aa19.53■□□□□ 0.72
CCDC88B-205ENST00000472524 INHBEP58166 350 aa19.53■□□□□ 0.72
CCDC88B-205ENST00000472524 CDAN1Q8IWY9 1227 aa19.53■□□□□ 0.72
CCDC88B-205ENST00000472524 MAST3O60307 1309 aa19.52■□□□□ 0.72
CCDC88B-205ENST00000472524 LAMB1P07942 1786 aa19.52■□□□□ 0.72
CCDC88B-205ENST00000472524 IREB2P48200 963 aaKnown RBP19.52■□□□□ 0.72
CCDC88B-205ENST00000472524 HDLBPQ00341 1268 aaKnown RBP19.52■□□□□ 0.72
CCDC88B-205ENST00000472524 ZKSCAN2Q63HK3 967 aa19.52■□□□□ 0.72
CCDC88B-205ENST00000472524 TMEM57Q8N5G2 664 aa19.52■□□□□ 0.72
CCDC88B-205ENST00000472524 WDR66Q8TBY9 1149 aa19.52■□□□□ 0.72
CCDC88B-205ENST00000472524 UNCXA6NJT0 531 aa19.51■□□□□ 0.71
CCDC88B-205ENST00000472524 GNAI2P04899 355 aa19.51■□□□□ 0.71
CCDC88B-205ENST00000472524 ADORA1P30542 326 aa19.51■□□□□ 0.71
CCDC88B-205ENST00000472524 PHKA1P46020 1223 aa19.51■□□□□ 0.71
CCDC88B-205ENST00000472524 CACNB3P54284 484 aa19.51■□□□□ 0.71
CCDC88B-205ENST00000472524 GNL3LQ9NVN8 582 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-205ENST00000472524 SUGT1Q9Y2Z0 365 aa19.51■□□□□ 0.71
CCDC88B-205ENST00000472524 TNNI2P48788 182 aa19.5■□□□□ 0.71
CCDC88B-205ENST00000472524 MTX1Q13505 466 aa19.5■□□□□ 0.71
CCDC88B-205ENST00000472524 ANKRD13AQ8IZ07 590 aa19.5■□□□□ 0.71
CCDC88B-205ENST00000472524 TEPSINQ96N21 525 aa19.5■□□□□ 0.71
CCDC88B-205ENST00000472524 PTPN18Q99952 460 aa19.5■□□□□ 0.71
CCDC88B-205ENST00000472524 TMEM39BQ9GZU3 492 aa19.5■□□□□ 0.71
CCDC88B-205ENST00000472524 TRIM17Q9Y577 477 aa19.5■□□□□ 0.71
CCDC88B-205ENST00000472524 ZBED9Q6R2W3 1325 aa19.5■□□□□ 0.71
CCDC88B-205ENST00000472524 HTTP42858 3142 aa19.49■□□□□ 0.71
CCDC88B-205ENST00000472524 CRHR2Q13324 411 aa19.49■□□□□ 0.71
CCDC88B-205ENST00000472524 ZDHHC15Q96MV8 337 aa19.49■□□□□ 0.71
CCDC88B-205ENST00000472524 ELP3Q9H9T3 547 aa19.49■□□□□ 0.71
CCDC88B-205ENST00000472524 TMOD2Q9NZR1 351 aa19.49■□□□□ 0.71
CCDC88B-205ENST00000472524 TFCP2Q12800 502 aa19.48■□□□□ 0.71
CCDC88B-205ENST00000472524 OTOP1Q7RTM1 612 aa19.48■□□□□ 0.71
CCDC88B-205ENST00000472524 CNKSR2Q8WXI2 1034 aa19.48■□□□□ 0.71
CCDC88B-205ENST00000472524 PNMA6EA0A0J9YXQ4 647 aa19.47■□□□□ 0.71
CCDC88B-205ENST00000472524 PRDX5P30044 214 aa19.47■□□□□ 0.71
CCDC88B-205ENST00000472524 TIMM10P62072 90 aa19.47■□□□□ 0.71
CCDC88B-205ENST00000472524 CCDC102BQ68D86 513 aa19.47■□□□□ 0.71
CCDC88B-205ENST00000472524 APOBEC3HQ6NTF7 200 aaKnown RBP19.47■□□□□ 0.71
CCDC88B-205ENST00000472524 HHIPL2Q6UWX4 724 aa19.47■□□□□ 0.71
CCDC88B-205ENST00000472524 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.47■□□□□ 0.71
CCDC88B-205ENST00000472524 FTSJ3Q8IY81 847 aaKnown RBP19.47■□□□□ 0.71
CCDC88B-205ENST00000472524 OPTNQ96CV9 577 aa19.47■□□□□ 0.71
CCDC88B-205ENST00000472524 MRIQ9BWK5 157 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms