RNA–Protein interactions for RNA: ENST00000468654.1

SHANK1-206, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 3

Gene SHANK1, Length 668 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-206ENST00000468654 CHAF1AQ13111 956 aaPredicted RBP26.36■■□□□ 1.81
SHANK1-206ENST00000468654 RASA3Q14644 834 aa26.36■■□□□ 1.81
SHANK1-206ENST00000468654 GRIK5Q16478 980 aa26.36■■□□□ 1.81
SHANK1-206ENST00000468654 SUPT20HL1Q3ZLR7 823 aa26.36■■□□□ 1.81
SHANK1-206ENST00000468654 DZIP1LQ8IYY4 767 aaKnown RBP26.36■■□□□ 1.81
SHANK1-206ENST00000468654 ZNF70Q9UC06 446 aaPredicted RBP26.36■■□□□ 1.81
SHANK1-206ENST00000468654 FRAT2O75474 233 aaPredicted RBP26.35■■□□□ 1.81
SHANK1-206ENST00000468654 BCAMP50895 628 aa26.35■■□□□ 1.81
SHANK1-206ENST00000468654 TNFAIP1Q13829 316 aa26.35■■□□□ 1.81
SHANK1-206ENST00000468654 ATG9AQ7Z3C6 839 aa26.35■■□□□ 1.81
SHANK1-206ENST00000468654 NBPF12Q5TAG4 269 aaPredicted RBP26.34■■□□□ 1.81
SHANK1-206ENST00000468654 CLMNQ96JQ2 1002 aa26.34■■□□□ 1.81
SHANK1-206ENST00000468654 TDRD3Q9H7E2 651 aaKnown RBP26.34■■□□□ 1.81
SHANK1-206ENST00000468654 FBXO3Q9UK99 471 aa26.34■■□□□ 1.81
SHANK1-206ENST00000468654 UNCXA6NJT0 531 aa26.33■■□□□ 1.81
SHANK1-206ENST00000468654 HDLBPQ00341 1268 aaKnown RBP26.33■■□□□ 1.81
SHANK1-206ENST00000468654 NOM1Q5C9Z4 860 aaKnown RBP26.33■■□□□ 1.81
SHANK1-206ENST00000468654 LPIN2Q92539 896 aa26.33■■□□□ 1.81
SHANK1-206ENST00000468654 CFHR5Q9BXR6 569 aa26.33■■□□□ 1.81
SHANK1-206ENST00000468654 R3HDMLQ9H3Y0 253 aa26.33■■□□□ 1.81
SHANK1-206ENST00000468654 AK9Q5TCS8 1911 aa26.32■■□□□ 1.8
SHANK1-206ENST00000468654 GPR25O00155 361 aa26.32■■□□□ 1.8
SHANK1-206ENST00000468654 CIAO1O76071 339 aa26.32■■□□□ 1.8
SHANK1-206ENST00000468654 SLC5A1P13866 664 aa26.32■■□□□ 1.8
SHANK1-206ENST00000468654 ARHGAP45Q92619 1136 aa26.32■■□□□ 1.8
SHANK1-206ENST00000468654 HPS5Q9UPZ3 1129 aa26.32■■□□□ 1.8
SHANK1-206ENST00000468654 LRRFIP2Q9Y608 721 aaKnown RBP26.32■■□□□ 1.8
SHANK1-206ENST00000468654 WNK4Q96J92 1243 aa26.31■■□□□ 1.8
SHANK1-206ENST00000468654 MEIS3Q99687 375 aa26.31■■□□□ 1.8
SHANK1-206ENST00000468654 HDAC5Q9UQL6 1122 aa26.31■■□□□ 1.8
SHANK1-206ENST00000468654 SUGT1Q9Y2Z0 365 aa26.31■■□□□ 1.8
SHANK1-206ENST00000468654 IREB2P48200 963 aaKnown RBP26.3■■□□□ 1.8
SHANK1-206ENST00000468654 SLC10A4Q96EP9 437 aa26.3■■□□□ 1.8
SHANK1-206ENST00000468654 SIL1Q9H173 461 aa26.3■■□□□ 1.8
SHANK1-206ENST00000468654 ZSWIM8A7E2V4 1837 aa26.3■■□□□ 1.8
SHANK1-206ENST00000468654 USP2O75604 605 aaPredicted RBP26.29■■□□□ 1.8
SHANK1-206ENST00000468654 ZBTB48P10074 688 aaPredicted RBP26.29■■□□□ 1.8
SHANK1-206ENST00000468654 INTS3Q68E01 1043 aaKnown RBP26.29■■□□□ 1.8
SHANK1-206ENST00000468654 TEKT1Q969V4 418 aa26.29■■□□□ 1.8
SHANK1-206ENST00000468654 TEPSINQ96N21 525 aa26.29■■□□□ 1.8
SHANK1-206ENST00000468654 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.29■■□□□ 1.8
SHANK1-206ENST00000468654 MAST3O60307 1309 aa26.29■■□□□ 1.8
SHANK1-206ENST00000468654 CDAN1Q8IWY9 1227 aa26.28■■□□□ 1.8
SHANK1-206ENST00000468654 DOCK2Q92608 1830 aa26.28■■□□□ 1.8
SHANK1-206ENST00000468654 MANSC4A6NHS7 340 aaPredicted RBP26.27■■□□□ 1.8
SHANK1-206ENST00000468654 TCP10L2B9ZVM9 353 aa26.27■■□□□ 1.8
SHANK1-206ENST00000468654 IGF2BP3O00425 579 aaKnown RBP eCLIP26.27■■□□□ 1.8
SHANK1-206ENST00000468654 GJA5P36382 358 aa26.27■■□□□ 1.8
SHANK1-206ENST00000468654 TNNI2P48788 182 aa26.27■■□□□ 1.8
SHANK1-206ENST00000468654 PKN2Q16513 984 aaKnown RBP26.27■■□□□ 1.8
SHANK1-206ENST00000468654 ATP2B3Q16720 1220 aa26.27■■□□□ 1.8
SHANK1-206ENST00000468654 ZDHHC15Q96MV8 337 aa26.27■■□□□ 1.8
SHANK1-206ENST00000468654 MRIQ9BWK5 157 aa26.27■■□□□ 1.8
SHANK1-206ENST00000468654 CEP126Q9P2H0 1117 aa26.27■■□□□ 1.8
SHANK1-206ENST00000468654 MYH2Q9UKX2 1941 aa26.27■■□□□ 1.8
SHANK1-206ENST00000468654 IFNL1Q8IU54 200 aa26.26■■□□□ 1.79
SHANK1-206ENST00000468654 ANKRD13AQ8IZ07 590 aa26.26■■□□□ 1.79
SHANK1-206ENST00000468654 TMEM39BQ9GZU3 492 aa26.26■■□□□ 1.79
SHANK1-206ENST00000468654 COPRSQ9NQ92 184 aa26.26■■□□□ 1.79
SHANK1-206ENST00000468654 PA2G4Q9UQ80 394 aaKnown RBP26.26■■□□□ 1.79
SHANK1-206ENST00000468654 FKTNO75072 461 aa26.25■■□□□ 1.79
SHANK1-206ENST00000468654 IL15P40933 162 aaPredicted RBP26.25■■□□□ 1.79
SHANK1-206ENST00000468654 INHBEP58166 350 aa26.25■■□□□ 1.79
SHANK1-206ENST00000468654 WDR66Q8TBY9 1149 aa26.25■■□□□ 1.79
SHANK1-206ENST00000468654 BRCA2P51587 3418 aa26.25■■□□□ 1.79
SHANK1-206ENST00000468654 MKI67P46013 3256 aaKnown RBP26.24■■□□□ 1.79
SHANK1-206ENST00000468654 ALDH1A1P00352 501 aa26.24■■□□□ 1.79
SHANK1-206ENST00000468654 GNAI3P08754 354 aa26.24■■□□□ 1.79
SHANK1-206ENST00000468654 APOBEC3HQ6NTF7 200 aaKnown RBP26.24■■□□□ 1.79
SHANK1-206ENST00000468654 TRIM27P14373 513 aa26.23■■□□□ 1.79
SHANK1-206ENST00000468654 HHIPL2Q6UWX4 724 aa26.23■■□□□ 1.79
SHANK1-206ENST00000468654 KIAA0100Q14667 2235 aaKnown RBP26.23■■□□□ 1.79
SHANK1-206ENST00000468654 IPO8O15397 1037 aaKnown RBP26.22■■□□□ 1.79
SHANK1-206ENST00000468654 SLC34A2O95436 690 aa26.22■■□□□ 1.79
SHANK1-206ENST00000468654 CACNB3P54284 484 aa26.22■■□□□ 1.79
SHANK1-206ENST00000468654 MTX1Q13505 466 aa26.22■■□□□ 1.79
SHANK1-206ENST00000468654 FKBP1CQ5VVH2 108 aa26.22■■□□□ 1.79
SHANK1-206ENST00000468654 FBXO46Q6PJ61 603 aaPredicted RBP26.22■■□□□ 1.79
SHANK1-206ENST00000468654 TMOD2Q9NZR1 351 aa26.22■■□□□ 1.79
SHANK1-206ENST00000468654 ATF7IPQ6VMQ6 1270 aa26.21■■□□□ 1.79
SHANK1-206ENST00000468654 FAM83AQ86UY5 434 aa26.21■■□□□ 1.79
SHANK1-206ENST00000468654 GNL3LQ9NVN8 582 aaKnown RBP26.21■■□□□ 1.79
SHANK1-206ENST00000468654 RPAP1Q9BWH6 1393 aaPredicted RBP26.2■■□□□ 1.79
SHANK1-206ENST00000468654 ZBTB22O15209 634 aa26.2■■□□□ 1.78
SHANK1-206ENST00000468654 BCAR3O75815 825 aa26.2■■□□□ 1.78
SHANK1-206ENST00000468654 SALL1Q9NSC2 1324 aa26.19■■□□□ 1.78
SHANK1-206ENST00000468654 SEMA3EO15041 775 aa26.19■■□□□ 1.78
SHANK1-206ENST00000468654 PHKA1P46020 1223 aa26.19■■□□□ 1.78
SHANK1-206ENST00000468654 PPP1R3FQ6ZSY5 799 aaPredicted RBP26.19■■□□□ 1.78
SHANK1-206ENST00000468654 DDX55Q8NHQ9 600 aaKnown RBP eCLIP26.19■■□□□ 1.78
SHANK1-206ENST00000468654 ELP3Q9H9T3 547 aa26.19■■□□□ 1.78
SHANK1-206ENST00000468654 TNNQ9UQP3 1299 aa26.19■■□□□ 1.78
SHANK1-206ENST00000468654 PTPRFP10586 1907 aa26.19■■□□□ 1.78
SHANK1-206ENST00000468654 SRGAP3O43295 1099 aa26.18■■□□□ 1.78
SHANK1-206ENST00000468654 PRDX5P30044 214 aa26.18■■□□□ 1.78
SHANK1-206ENST00000468654 OPTNQ96CV9 577 aa26.18■■□□□ 1.78
SHANK1-206ENST00000468654 TESPA1A2RU30 521 aaPredicted RBP26.17■■□□□ 1.78
SHANK1-206ENST00000468654 ADORA1P30542 326 aa26.17■■□□□ 1.78
SHANK1-206ENST00000468654 CRHR2Q13324 411 aa26.17■■□□□ 1.78
SHANK1-206ENST00000468654 VGLL4Q14135 290 aa26.17■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms