RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 LARGE2Q8N3Y3 721 aa7.44□□□□□ -1.22
HMGB1-207ENST00000468384 CDCA5Q96FF9 252 aa7.44□□□□□ -1.22
HMGB1-207ENST00000468384 PSMD1Q99460 953 aa7.44□□□□□ -1.22
HMGB1-207ENST00000468384 FAM205AQ6ZU69 1335 aa7.44□□□□□ -1.22
HMGB1-207ENST00000468384 CDHR2Q9BYE9 1310 aa7.44□□□□□ -1.22
HMGB1-207ENST00000468384 ALPK3Q96L96 1907 aa7.44□□□□□ -1.22
HMGB1-207ENST00000468384 CACNA1HO95180 2353 aa7.44□□□□□ -1.22
HMGB1-207ENST00000468384 SSC5DA1L4H1 1573 aa7.43□□□□□ -1.22
HMGB1-207ENST00000468384 ANKRD17O75179 2603 aaKnown RBP7.43□□□□□ -1.22
HMGB1-207ENST00000468384 UBE2Q2LH0YL09 131 aa7.43□□□□□ -1.22
HMGB1-207ENST00000468384 MSTNO14793 375 aa7.43□□□□□ -1.22
HMGB1-207ENST00000468384 ZIC2O95409 532 aaPredicted RBP7.43□□□□□ -1.22
HMGB1-207ENST00000468384 CRHR2Q13324 411 aa7.43□□□□□ -1.22
HMGB1-207ENST00000468384 GRIN2CQ14957 1233 aa7.43□□□□□ -1.22
HMGB1-207ENST00000468384 DCPSQ96C86 337 aaKnown RBP7.43□□□□□ -1.22
HMGB1-207ENST00000468384 RNF208Q9H0X6 261 aa7.43□□□□□ -1.22
HMGB1-207ENST00000468384 TTC21BQ7Z4L5 1316 aa7.43□□□□□ -1.22
HMGB1-207ENST00000468384 COL5A3P25940 1745 aaPredicted RBP7.42□□□□□ -1.22
HMGB1-207ENST00000468384 ARFGEF2Q9Y6D5 1785 aa7.42□□□□□ -1.22
HMGB1-207ENST00000468384 SHTN1A0MZ66 631 aa7.42□□□□□ -1.22
HMGB1-207ENST00000468384 CYSRT1A8MQ03 144 aa7.42□□□□□ -1.22
HMGB1-207ENST00000468384 MDM2Q00987 491 aaPredicted RBP7.42□□□□□ -1.22
HMGB1-207ENST00000468384 CXCL9Q07325 125 aa7.42□□□□□ -1.22
HMGB1-207ENST00000468384 AKNAD1Q5T1N1 836 aa7.42□□□□□ -1.22
HMGB1-207ENST00000468384 PRR5LQ6MZQ0 368 aa7.42□□□□□ -1.22
HMGB1-207ENST00000468384 RAPGEF4Q8WZA2 1011 aa7.42□□□□□ -1.22
HMGB1-207ENST00000468384 PAWRQ96IZ0 340 aaKnown RBP7.42□□□□□ -1.22
HMGB1-207ENST00000468384 SPOCK3Q9BQ16 436 aa7.42□□□□□ -1.22
HMGB1-207ENST00000468384 BCL2L13Q9BXK5 485 aa7.42□□□□□ -1.22
HMGB1-207ENST00000468384 CXXC1Q9P0U4 656 aaPredicted RBP7.42□□□□□ -1.22
HMGB1-207ENST00000468384 NPC1L1Q9UHC9 1359 aa7.42□□□□□ -1.22
HMGB1-207ENST00000468384 HELZ2Q9BYK8 2649 aaKnown RBP7.41□□□□□ -1.22
HMGB1-207ENST00000468384 DNAH14Q0VDD8 3507 aa7.41□□□□□ -1.22
HMGB1-207ENST00000468384 H7C1D1 291 aa7.41□□□□□ -1.22
HMGB1-207ENST00000468384 IGF2BP3O00425 579 aaKnown RBP eCLIP7.41□□□□□ -1.22
HMGB1-207ENST00000468384 SGPL1O95470 568 aa7.41□□□□□ -1.22
HMGB1-207ENST00000468384 KCNQ1P51787 676 aa7.41□□□□□ -1.22
HMGB1-207ENST00000468384 INHBEP58166 350 aa7.41□□□□□ -1.22
HMGB1-207ENST00000468384 SMAD3P84022 425 aaKnown RBP7.41□□□□□ -1.22
HMGB1-207ENST00000468384 CSPP1Q1MSJ5 1256 aa7.41□□□□□ -1.22
HMGB1-207ENST00000468384 NIM1KQ8IY84 436 aa7.41□□□□□ -1.22
HMGB1-207ENST00000468384 SH2B1Q9NRF2 756 aaPredicted RBP7.41□□□□□ -1.22
HMGB1-207ENST00000468384 CABP1Q9NZU7 370 aa7.41□□□□□ -1.22
HMGB1-207ENST00000468384 NARFQ9UHQ1 456 aa7.41□□□□□ -1.22
HMGB1-207ENST00000468384 CNOT7Q9UIV1 285 aaKnown RBP7.41□□□□□ -1.22
HMGB1-207ENST00000468384 KIF24Q5T7B8 1368 aa7.41□□□□□ -1.22
HMGB1-207ENST00000468384 K7ELQ4 463 aaPredicted RBP7.4□□□□□ -1.22
HMGB1-207ENST00000468384 ITGB2P05107 769 aa7.4□□□□□ -1.22
HMGB1-207ENST00000468384 VSIG8P0DPA2 414 aa7.4□□□□□ -1.22
HMGB1-207ENST00000468384 TATP17735 454 aaPredicted RBP7.4□□□□□ -1.22
HMGB1-207ENST00000468384 TFF2Q03403 129 aa7.4□□□□□ -1.22
HMGB1-207ENST00000468384 NECAB2Q7Z6G3 386 aa7.4□□□□□ -1.22
HMGB1-207ENST00000468384 SLC51AQ86UW1 340 aa7.4□□□□□ -1.22
HMGB1-207ENST00000468384 SULF1Q8IWU6 871 aa7.4□□□□□ -1.22
HMGB1-207ENST00000468384 IP6K1Q92551 441 aa7.4□□□□□ -1.22
HMGB1-207ENST00000468384 TJP1Q07157 1748 aa7.4□□□□□ -1.23
HMGB1-207ENST00000468384 ZNF831Q5JPB2 1677 aa7.39□□□□□ -1.23
HMGB1-207ENST00000468384 SNED1Q8TER0 1413 aa7.39□□□□□ -1.23
HMGB1-207ENST00000468384 SEMA3EO15041 775 aa7.39□□□□□ -1.23
HMGB1-207ENST00000468384 TFRCP02786 760 aaKnown RBP7.39□□□□□ -1.23
HMGB1-207ENST00000468384 EIF5P55010 431 aaKnown RBP7.39□□□□□ -1.23
HMGB1-207ENST00000468384 CCDC85BQ15834 202 aaPredicted RBP7.39□□□□□ -1.23
HMGB1-207ENST00000468384 AAK1Q2M2I8 961 aa7.39□□□□□ -1.23
HMGB1-207ENST00000468384 INTS5Q6P9B9 1019 aaKnown RBP7.39□□□□□ -1.23
HMGB1-207ENST00000468384 ANKS1AQ92625 1134 aa7.39□□□□□ -1.23
HMGB1-207ENST00000468384 TATDN2Q93075 761 aa7.39□□□□□ -1.23
HMGB1-207ENST00000468384 TESPA1A2RU30 521 aaPredicted RBP7.38□□□□□ -1.23
HMGB1-207ENST00000468384 MANSC4A6NHS7 340 aaPredicted RBP7.38□□□□□ -1.23
HMGB1-207ENST00000468384 CAPN2P17655 700 aa7.38□□□□□ -1.23
HMGB1-207ENST00000468384 E2F4Q16254 413 aa7.38□□□□□ -1.23
HMGB1-207ENST00000468384 TBC1D10BQ4KMP7 808 aaPredicted RBP7.38□□□□□ -1.23
HMGB1-207ENST00000468384 PRSS33Q8NF86 280 aa7.38□□□□□ -1.23
HMGB1-207ENST00000468384 DIS3LQ8TF46 1054 aaKnown RBP7.38□□□□□ -1.23
HMGB1-207ENST00000468384 CRISPLD2Q9H0B8 497 aa7.38□□□□□ -1.23
HMGB1-207ENST00000468384 SLC24A3Q9HC58 644 aa7.38□□□□□ -1.23
HMGB1-207ENST00000468384 PNMA3Q9UL41 463 aa7.38□□□□□ -1.23
HMGB1-207ENST00000468384 POLR2AP24928 1970 aaKnown RBP7.38□□□□□ -1.23
HMGB1-207ENST00000468384 SPTBN2O15020 2390 aa7.38□□□□□ -1.23
HMGB1-207ENST00000468384 ATRNL1Q5VV63 1379 aa7.37□□□□□ -1.23
HMGB1-207ENST00000468384 SOBPA7XYQ1 873 aa7.37□□□□□ -1.23
HMGB1-207ENST00000468384 EGFRP00533 1210 aa7.37□□□□□ -1.23
HMGB1-207ENST00000468384 NPR1P16066 1061 aa7.37□□□□□ -1.23
HMGB1-207ENST00000468384 TCIRG1Q13488 830 aa7.37□□□□□ -1.23
HMGB1-207ENST00000468384 NEUROD2Q15784 382 aa7.37□□□□□ -1.23
HMGB1-207ENST00000468384 PLA2G4EQ3MJ16 856 aa7.37□□□□□ -1.23
HMGB1-207ENST00000468384 DGLUCYQ7Z3D6 616 aa7.37□□□□□ -1.23
HMGB1-207ENST00000468384 TRIM46Q7Z4K8 759 aa7.37□□□□□ -1.23
HMGB1-207ENST00000468384 NUTM1Q86Y26 1132 aa7.37□□□□□ -1.23
HMGB1-207ENST00000468384 USHBP1Q8N6Y0 703 aa7.37□□□□□ -1.23
HMGB1-207ENST00000468384 MYO15AQ9UKN7 3530 aa7.37□□□□□ -1.23
HMGB1-207ENST00000468384 ROCK1Q13464 1354 aa7.36□□□□□ -1.23
HMGB1-207ENST00000468384 SOS1Q07889 1333 aaPredicted RBP7.36□□□□□ -1.23
HMGB1-207ENST00000468384 GRK4P32298 578 aa7.36□□□□□ -1.23
HMGB1-207ENST00000468384 PRMT2P55345 433 aa7.36□□□□□ -1.23
HMGB1-207ENST00000468384 FAM50AQ14320 339 aaKnown RBP7.36□□□□□ -1.23
HMGB1-207ENST00000468384 PDE3AQ14432 1141 aa7.36□□□□□ -1.23
HMGB1-207ENST00000468384 NBPF6Q5VWK0 638 aa7.36□□□□□ -1.23
HMGB1-207ENST00000468384 NBPF4Q96M43 638 aa7.36□□□□□ -1.23
HMGB1-207ENST00000468384 GAS2L1Q99501 681 aaPredicted RBP7.36□□□□□ -1.23
HMGB1-207ENST00000468384 UNC93B1Q9H1C4 597 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms