RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 ZNF280AP59817 542 aaPredicted RBP18.43■□□□□ 0.54
NPHP4-205ENST00000466897 TBC1D9Q6ZT07 1266 aa18.43■□□□□ 0.54
NPHP4-205ENST00000466897 GPRC5DQ9NZD1 345 aa18.43■□□□□ 0.54
NPHP4-205ENST00000466897 LRP2BPQ9P2M1 347 aa18.43■□□□□ 0.54
NPHP4-205ENST00000466897 ZBTB12Q9Y330 459 aaPredicted RBP18.43■□□□□ 0.54
NPHP4-205ENST00000466897 USP17L8P0C7I0 530 aa18.42■□□□□ 0.54
NPHP4-205ENST00000466897 GSPT1P15170 499 aaKnown RBP18.42■□□□□ 0.54
NPHP4-205ENST00000466897 MAP3K12Q12852 859 aa18.42■□□□□ 0.54
NPHP4-205ENST00000466897 BMP2KLQ5H9B9 411 aa18.42■□□□□ 0.54
NPHP4-205ENST00000466897 CNTROBQ8N137 903 aa18.42■□□□□ 0.54
NPHP4-205ENST00000466897 OGFOD1Q8N543 542 aa18.42■□□□□ 0.54
NPHP4-205ENST00000466897 EDC3Q96F86 508 aaKnown RBP18.42■□□□□ 0.54
NPHP4-205ENST00000466897 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.42■□□□□ 0.54
NPHP4-205ENST00000466897 SERPINA10Q9UK55 444 aa18.42■□□□□ 0.54
NPHP4-205ENST00000466897 HDAC9Q9UKV0 1011 aa18.42■□□□□ 0.54
NPHP4-205ENST00000466897 TTF2Q9UNY4 1162 aaKnown RBP18.42■□□□□ 0.54
NPHP4-205ENST00000466897 FOCADQ5VW36 1801 aa18.42■□□□□ 0.54
NPHP4-205ENST00000466897 CDK5RAP2Q96SN8 1893 aa18.41■□□□□ 0.54
NPHP4-205ENST00000466897 RGS3P49796 1198 aa18.41■□□□□ 0.54
NPHP4-205ENST00000466897 GRIK5Q16478 980 aa18.41■□□□□ 0.54
NPHP4-205ENST00000466897 LRRFIP1Q32MZ4 808 aaKnown RBP18.41■□□□□ 0.54
NPHP4-205ENST00000466897 SKAP1Q86WV1 359 aa18.41■□□□□ 0.54
NPHP4-205ENST00000466897 DZIP1Q86YF9 867 aaKnown RBP18.41■□□□□ 0.54
NPHP4-205ENST00000466897 KIAA0825Q8IV33 1275 aa18.41■□□□□ 0.54
NPHP4-205ENST00000466897 SLF2Q8IX21 1173 aa18.41■□□□□ 0.54
NPHP4-205ENST00000466897 NSUN4Q96CB9 384 aaKnown RBP18.41■□□□□ 0.54
NPHP4-205ENST00000466897 FAM163AQ96GL9 167 aaPredicted RBP18.41■□□□□ 0.54
NPHP4-205ENST00000466897 IQCA1LA6NCM1 817 aa18.4■□□□□ 0.54
NPHP4-205ENST00000466897 IDH1O75874 414 aaKnown RBP18.4■□□□□ 0.54
NPHP4-205ENST00000466897 ZFYP08048 801 aaPredicted RBP18.4■□□□□ 0.54
NPHP4-205ENST00000466897 GSTO1P78417 241 aa18.4■□□□□ 0.54
NPHP4-205ENST00000466897 MECOMQ03112 1051 aa18.4■□□□□ 0.54
NPHP4-205ENST00000466897 ZSCAN25Q6NSZ9 544 aa18.4■□□□□ 0.54
NPHP4-205ENST00000466897 HHIPL2Q6UWX4 724 aa18.4■□□□□ 0.54
NPHP4-205ENST00000466897 MTMR14Q8NCE2 650 aa18.4■□□□□ 0.54
NPHP4-205ENST00000466897 RAI14Q9P0K7 980 aa18.4■□□□□ 0.54
NPHP4-205ENST00000466897 CNOT7Q9UIV1 285 aaKnown RBP18.4■□□□□ 0.54
NPHP4-205ENST00000466897 GAKO14976 1311 aa18.4■□□□□ 0.54
NPHP4-205ENST00000466897 LMOD1P29536 600 aaPredicted RBP18.39■□□□□ 0.53
NPHP4-205ENST00000466897 MICALL2Q8IY33 904 aa18.39■□□□□ 0.53
NPHP4-205ENST00000466897 ZNF384Q8TF68 577 aa18.39■□□□□ 0.53
NPHP4-205ENST00000466897 TEKT1Q969V4 418 aa18.39■□□□□ 0.53
NPHP4-205ENST00000466897 ZDHHC15Q96MV8 337 aa18.39■□□□□ 0.53
NPHP4-205ENST00000466897 TRIM6-TRIM34B2RNG4 842 aa18.38■□□□□ 0.53
NPHP4-205ENST00000466897 H7C1D1 291 aa18.38■□□□□ 0.53
NPHP4-205ENST00000466897 MAP4K4O95819 1239 aaPredicted RBP18.38■□□□□ 0.53
NPHP4-205ENST00000466897 LDHCP07864 332 aa18.38■□□□□ 0.53
NPHP4-205ENST00000466897 SDSP20132 328 aa18.38■□□□□ 0.53
NPHP4-205ENST00000466897 ADD2P35612 726 aa18.38■□□□□ 0.53
NPHP4-205ENST00000466897 UBE3CQ15386 1083 aa18.38■□□□□ 0.53
NPHP4-205ENST00000466897 NAA16Q6N069 864 aaPredicted RBP18.38■□□□□ 0.53
NPHP4-205ENST00000466897 FSD1Q9BTV5 496 aa18.38■□□□□ 0.53
NPHP4-205ENST00000466897 TCRBV5S4A2TA0A5A2 114 aa18.37■□□□□ 0.53
NPHP4-205ENST00000466897 F8W031 263 aaPredicted RBP18.37■□□□□ 0.53
NPHP4-205ENST00000466897 PDE6AP16499 860 aa18.37■□□□□ 0.53
NPHP4-205ENST00000466897 CRKP46108 304 aa18.37■□□□□ 0.53
NPHP4-205ENST00000466897 SLC9C2Q5TAH2 1124 aa18.37■□□□□ 0.53
NPHP4-205ENST00000466897 CERS3Q8IU89 383 aa18.37■□□□□ 0.53
NPHP4-205ENST00000466897 ZBED3Q96IU2 234 aaPredicted RBP18.37■□□□□ 0.53
NPHP4-205ENST00000466897 MYOZ2Q9NPC6 264 aa18.37■□□□□ 0.53
NPHP4-205ENST00000466897 ADARB2Q9NS39 739 aaKnown RBP18.37■□□□□ 0.53
NPHP4-205ENST00000466897 HACL1Q9UJ83 578 aa18.37■□□□□ 0.53
NPHP4-205ENST00000466897 MROH7-TTC4A0A0A0MT08 1334 aa18.37■□□□□ 0.53
NPHP4-205ENST00000466897 POTECB2RU33 542 aa18.36■□□□□ 0.53
NPHP4-205ENST00000466897 HIP1O00291 1037 aa18.36■□□□□ 0.53
NPHP4-205ENST00000466897 MAGEB6Q8N7X4 407 aa18.36■□□□□ 0.53
NPHP4-205ENST00000466897 RILPL2Q969X0 211 aa18.36■□□□□ 0.53
NPHP4-205ENST00000466897 DAGLAQ9Y4D2 1042 aa18.36■□□□□ 0.53
NPHP4-205ENST00000466897 ZNF532Q9HCE3 1301 aa18.35■□□□□ 0.53
NPHP4-205ENST00000466897 GPR75-ASB3A0A0A6YYF3 556 aa18.35■□□□□ 0.53
NPHP4-205ENST00000466897 RNF113AO15541 343 aaKnown RBP18.35■□□□□ 0.53
NPHP4-205ENST00000466897 EPS15P42566 896 aa18.35■□□□□ 0.53
NPHP4-205ENST00000466897 DIXDC1Q155Q3 683 aa18.35■□□□□ 0.53
NPHP4-205ENST00000466897 CFAP100Q494V2 611 aa18.35■□□□□ 0.53
NPHP4-205ENST00000466897 USP50Q70EL3 339 aaPredicted RBP18.35■□□□□ 0.53
NPHP4-205ENST00000466897 SHTN1A0MZ66 631 aa18.34■□□□□ 0.53
NPHP4-205ENST00000466897 SPDYE2BA6NHP3 402 aa18.34■□□□□ 0.53
NPHP4-205ENST00000466897 SPDYE6P0CI01 402 aa18.34■□□□□ 0.53
NPHP4-205ENST00000466897 VEGFAP15692 232 aaPredicted RBP18.34■□□□□ 0.53
NPHP4-205ENST00000466897 PPP4CP60510 307 aa18.34■□□□□ 0.53
NPHP4-205ENST00000466897 DLGAP5Q15398 846 aa18.34■□□□□ 0.53
NPHP4-205ENST00000466897 KIF4BQ2VIQ3 1234 aa18.34■□□□□ 0.53
NPHP4-205ENST00000466897 APPBP2Q92624 585 aa18.34■□□□□ 0.53
NPHP4-205ENST00000466897 TAF1DQ9H5J8 278 aaPredicted RBP18.34■□□□□ 0.53
NPHP4-205ENST00000466897 CYP7A1P22680 504 aa18.33■□□□□ 0.52
NPHP4-205ENST00000466897 EPHX2P34913 555 aa18.33■□□□□ 0.52
NPHP4-205ENST00000466897 APOBEC3HQ6NTF7 200 aaKnown RBP18.33■□□□□ 0.52
NPHP4-205ENST00000466897 ADGRA1Q86SQ6 560 aa18.33■□□□□ 0.52
NPHP4-205ENST00000466897 PNMA8AQ86V59 439 aaPredicted RBP18.33■□□□□ 0.52
NPHP4-205ENST00000466897 POLR2AP24928 1970 aaKnown RBP18.33■□□□□ 0.52
NPHP4-205ENST00000466897 DDX60LQ5H9U9 1706 aaKnown RBP18.32■□□□□ 0.52
NPHP4-205ENST00000466897 WNT10BO00744 389 aa18.32■□□□□ 0.52
NPHP4-205ENST00000466897 BAG3O95817 575 aa18.32■□□□□ 0.52
NPHP4-205ENST00000466897 PLCG2P16885 1265 aa18.32■□□□□ 0.52
NPHP4-205ENST00000466897 ZMYM1Q5SVZ6 1142 aa18.32■□□□□ 0.52
NPHP4-205ENST00000466897 SAMD7Q7Z3H4 446 aa18.32■□□□□ 0.52
NPHP4-205ENST00000466897 NAV1Q8NEY1 1877 aa18.31■□□□□ 0.52
NPHP4-205ENST00000466897 MYO1BO43795 1136 aa18.31■□□□□ 0.52
NPHP4-205ENST00000466897 EGFRP00533 1210 aa18.31■□□□□ 0.52
NPHP4-205ENST00000466897 RBM5P52756 815 aaKnown RBP eCLIP18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms